G147649


Basic Information

Item Value
gene id G147649
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39078300 ~ 39102214 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU199797
caaaatttcttgatgaacagaccaatagaaactcttcaaaatgacctgaaataaactctttttacattgacttccattgaaagtttacaagtttttttctctctcctgtaaagttgctgttttggagataagcgtttttcattggacagcgacgaaataCAGTGATTCTAATGAGTCCAATGTGTTGTGGTGAAGTCTTTAGCAAAGACAAGTGTGGTATaccataatataatagcatactTCTcaaacatggcaaaaatcaaaacactaaaaacacctaagatatacatataatattcacctttgtgtgtaaaaaaaaaagagaaacatctTTTATATCCcctttaacccttttagacctgaattatgttccaatgaaaaataaatgttttttttttttgtcagcaaTTTATACAAACCAAGACTAAGAAGAATTATAGTCTTAAGAGAAatccatataaaaaataaatccaattgacaaaaatattaattgtcCAGTAAAACGTTActataagggtacattaataaacagtatttaagACATATtgttttaactaatgattaattgaCACTAGACACTAGACATTGCTAATCATTActctatatttaattaatagttATTCATTCAAAGGATTTACAACATTATTAAGCTGTAAAAttgaataatgtttaataatgtcttgcctgtgtttatcatttttattgtatatttgatGTTTTTACTTCTGAAATCATCTATAAACAGTAACATTAACATGATAAAAGTGTTGCCCTAATGTCTGAGCTGCTGTGGGagggggctaagctactgtaaTTTTTCCATTGGCTAGTTAAtgttctattctgatggacaataaagtgcaacaaaatatataaaaaaaaaagaaaacacatgatgtccattgtaatggatgcaaggtctgaaagggttaaaataaacCCAACACTTCAAAGAAAAATAAGGTGTTTCAAGTGTTTGTTGTAACAATTGTAACATGAACCATGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199797 True 1008 lncRNA 0.29 2 39078300 39102214

Neighbor

gene id symbol gene type direction distance location
LOC103037934 LOC108434867,LOC108267153,LOC107572570,LOC107753961,LOC107659726,LOC105903083,LOC107667731 coding downstream 8749 39065680 ~ 39069551 (-)
LOC103040853 LOC108434861 coding downstream 72071 39000095 ~ 39006229 (-)
sf1 sf1,LOC107753954,LOC107659718,LOC107562691,LOC107588130,LOC107691964 coding downstream 80559 38986012 ~ 38997741 (-)
LOC103042589 pygmb,LOC108434859,LOC108267457,LOC107753953,LOC107742296,LOC107562665,LOC107701539 coding downstream 95083 38963738 ~ 38983217 (-)
LOC103041964 clcn5,LOC108434858,LOC108267828,LOC106563682,LOC108279192 coding downstream 116797 38927526 ~ 38961503 (-)
LOC103036164 LOC108434831 coding upstream 24685 39126899 ~ 39137179 (-)
LOC103035548 cldn7a,LOC103035548,LOC108434869,LOC107667734,LOC107753993,LOC108268068,LOC107572167 coding upstream 51023 39153237 ~ 39161707 (-)
LOC103034907 chrnb1l,LOC108434832,LOC108268067,LOC107753962 coding upstream 54935 39157149 ~ 39195199 (-)
chrnb1 chrnb1,LOC108267171,LOC107659727,LOC107664276,LOC103358387 coding upstream 96648 39198862 ~ 39244281 (-)
LOC103028039 tmem102,LOC108434872,LOC108267795,LOC107750772,LOC107659729,LOC107564774,LOC107560290 coding upstream 365149 39467363 ~ 39484662 (-)
G147637 NA non-coding downstream 52583 39023013 ~ 39025717 (-)
G147629 NA non-coding downstream 151501 38926385 ~ 38926799 (-)
LOC111194220 NA non-coding downstream 326943 38747818 ~ 38751357 (-)
G147514 NA non-coding downstream 396622 38639308 ~ 38681678 (-)
G147506 NA non-coding downstream 449190 38628400 ~ 38629110 (-)
G147643 NA non-coding upstream 36807 39139021 ~ 39141977 (-)
G147645 NA non-coding upstream 46878 39149092 ~ 39151181 (-)
G147691 NA non-coding upstream 157683 39259897 ~ 39260652 (-)
G147693 NA non-coding upstream 160611 39262825 ~ 39265172 (-)
G147698 NA non-coding upstream 220377 39322591 ~ 39323343 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other downstream 17241 39041593 ~ 39061059 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other downstream 60668 39014002 ~ 39017632 (-)
LOC103040134 NA other downstream 65883 39006986 ~ 39012417 (-)
LOC103047699 NA other downstream 1167427 37904892 ~ 37910873 (-)
LOC111194363 LOC108267931 other downstream 1219729 37840882 ~ 37858571 (-)
LOC103036951 ponzr4,LOC108434830,LOC107659705,LOC107750795,LOC107667736,LOC107753979 other upstream 8934 39111148 ~ 39113616 (-)
LOC103036465 NA other upstream 15053 39117267 ~ 39123815 (-)
fgf11 fgf11,fgf11a,LOC107664286,LOC107753963,LOC107750771,LOC107659728 other upstream 163135 39265349 ~ 39398012 (-)
tmem256 tmem256,LOC107564775,LOC107659713,LOC107560291 other upstream 388347 39490561 ~ 39498234 (-)
ufsp1 NA other upstream 713693 39815907 ~ 39817763 (-)

Expression


Co-expression Network