G147652 (ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307)


Basic Information

Item Value
gene id G147652
gene name ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39100098 ~ 39104914 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU199801
gtgcatgtgtctGTATTTACCTGTGATGCATGCTGACCCCTATGTGTCCACGTGAAGGCATCTTGAGATTCCAGGCCAAACCTCCGGCTTGTCTTCTTAAATAAAGGGGCCCAGTCAGTCTTACAGAGTGTCACTCTGCTGTAAGAGCTCTCCTCAGACTCATCTTACAGCTCTCATCATGGCGACCAAAATGGTTATCCAGCAGCCCAAGGCACTTGTGGTGTCAGCTGCTTCGGACCAGTGGACCACCAGCATCTGCGAGTGTGAAAACGTTAATGAATGCTGTTTCTCTGTGTGGTGCTTCCCGTGCTACGCCTGCATCACAGCTCGGGACCACGGCGAGTGTCTGTGTCTGCCTCTGCTGGACTCCTGCGGCTTTATCCCCCCAGTCACGCTCTCCATGAGGGTGTCTATGCGCAAGCGCTACGGCATTACGGACACCATCTGCAATGACTGCGTGTACTCCTTCTTCTGCGGCCCATGCAGTTGGTGCCAAATCAGGCGTGAGATGAAGGCCAGACTTCATCCAGTCACATTTTTCAACAACAGGCCAACTGGCTAAACACTGGCTGAGCAAAGGCTTGAATCACtctcatcaccaccaccattaccctcctcatcatcatcatcatcacatttaCCCTGGCATCATTACCATCACCAGCAGCACAACTGAAAAGCACGTCTCTACCTGACATTAACTTCTCCTCCTACTCCTGATTGCACATGTGTCTGGATGAAATCTGAAGTCTGGATCATCCCTCAttcacactctcactgatcTGAAGGCCGTTTCCAGTTCGACCGGGCAGTAGCACTGGCTAATCGCTTGTTTGGGTTGCGGAACTCTGCTCATGTATGAAGACTGGAGCCTCCTGATCAGATAACATGTATATTCCTAAAAATGAAGATGTCAAAACGGGTTCTGGGCAGCactattaacccttgtgtggtgttcatcaaatgatactaaaaaaatattttttctaactcaaactcattggcattggctcatttgttgtgaaaaacatataccaaaacacatttttgataaagacacactgtacacccccccttacacatttatatcacatacagtatgtttggccaagggctaataaacattgcttcatttgtaaatttgaaacaaaacaaattttctactcatatcttgagtttaattcattttttcttacattttattaaaaaactaataaaaaaagagtggcactttttgaaagacatgtaacataagaaaggtaaaaggCAAaaaggcaaatattaaccatgtaagctgtttatattgcttgcaatttaggtgaagcaagcatgtgtaaagcattttaatgtaaaatggcttaattttgctgaattaaacacaagtaacaaagtaaacgagtaacaaaaatatgaacaccacacaagggttaaaatagaACAACTTTTCTTATGGATGTATCTGTAAAGAACCATTTCATTTCATAAATGAGATGTAAGAGTTTTAAAAGAACTGCTAGatcataaaaaagtttttttttttttgtagatctATACATCCAACATGGAAACCATTTTAgaagctttatttttaagagtgtacagtgtttatgtattattaatacattaatactaTGAATGAAGGCACATATGTTTAAATCATGCAGTAAAATTAAGTGTTTAACTAAACGTTTGGAATATGAAGGACATTACCTTTAATCACCTTTACTTAGAGATTACTATTTACTATTAGAATGATACaatctgtttgtttctttgttcgttagtttgtttgttttttgcttacTTCTcaccactgattttttttttaatgatccattaaaaagtaaagaatttagcTCAGTTTTCCCCAAGCTCACATTATAGTATTTATAGGTTTGATGAATTCATCCAATCAAATACCTGTTTATAACTTTATAATTGTTCTACAATGTGTGTAAACTTTTGTAACATCTTTGTTTGTGAATTGACAattatcaataaatcaataaatctga

Function

NR:

description
cornifelin homolog B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199801 True 2015 TUCP 0.38 4 39100098 39104914

Neighbor

gene id symbol gene type direction distance location
LOC103037073 NA coding downstream 14920 39082567 ~ 39085178 (-)
LOC103037934 LOC108434867,LOC108267153,LOC107572570,LOC107753961,LOC107659726,LOC105903083,LOC107667731 coding downstream 30547 39065680 ~ 39069551 (-)
LOC103040853 LOC108434861 coding downstream 93869 39000095 ~ 39006229 (-)
sf1 sf1,LOC107753954,LOC107659718,LOC107562691,LOC107588130,LOC107691964 coding downstream 102357 38986012 ~ 38997741 (-)
LOC103042589 pygmb,LOC108434859,LOC108267457,LOC107753953,LOC107742296,LOC107562665,LOC107701539 coding downstream 116881 38963738 ~ 38983217 (-)
LOC103036164 LOC108434831 coding upstream 21985 39126899 ~ 39137179 (-)
LOC103035548 cldn7a,LOC103035548,LOC108434869,LOC107667734,LOC107753993,LOC108268068,LOC107572167 coding upstream 48323 39153237 ~ 39161707 (-)
LOC103034907 chrnb1l,LOC108434832,LOC108268067,LOC107753962 coding upstream 52235 39157149 ~ 39195199 (-)
chrnb1 chrnb1,LOC108267171,LOC107659727,LOC107664276,LOC103358387 coding upstream 93948 39198862 ~ 39244281 (-)
LOC103028039 tmem102,LOC108434872,LOC108267795,LOC107750772,LOC107659729,LOC107564774,LOC107560290 coding upstream 362449 39467363 ~ 39484662 (-)
G147637 NA non-coding downstream 74381 39023013 ~ 39025717 (-)
G147629 NA non-coding downstream 173299 38926385 ~ 38926799 (-)
LOC111194220 NA non-coding downstream 348741 38747818 ~ 38751357 (-)
G147514 NA non-coding downstream 418420 38639308 ~ 38681678 (-)
G147506 NA non-coding downstream 470988 38628400 ~ 38629110 (-)
G147643 NA non-coding upstream 34107 39139021 ~ 39141977 (-)
G147645 NA non-coding upstream 44178 39149092 ~ 39151181 (-)
G147691 NA non-coding upstream 154983 39259897 ~ 39260652 (-)
G147693 NA non-coding upstream 157911 39262825 ~ 39265172 (-)
G147698 NA non-coding upstream 217677 39322591 ~ 39323343 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other downstream 39039 39041593 ~ 39061059 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other downstream 82466 39014002 ~ 39017632 (-)
LOC103040134 NA other downstream 87681 39006986 ~ 39012417 (-)
LOC103047699 NA other downstream 1189225 37904892 ~ 37910873 (-)
LOC111194363 LOC108267931 other downstream 1241527 37840882 ~ 37858571 (-)
LOC103036951 ponzr4,LOC108434830,LOC107659705,LOC107750795,LOC107667736,LOC107753979 other upstream 6234 39111148 ~ 39113616 (-)
LOC103036465 NA other upstream 12353 39117267 ~ 39123815 (-)
fgf11 fgf11,fgf11a,LOC107664286,LOC107753963,LOC107750771,LOC107659728 other upstream 160435 39265349 ~ 39398012 (-)
tmem256 tmem256,LOC107564775,LOC107659713,LOC107560291 other upstream 385647 39490561 ~ 39498234 (-)
ufsp1 NA other upstream 710993 39815907 ~ 39817763 (-)

Expression


Co-expression Network