LOC103036465


Basic Information

Item Value
gene id LOC103036465
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39117267 ~ 39123815 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU199810
GAAAGGTGTGGGTATGACTGAAGTGAGTGTCTATCTGTTCATCTTCATCCTGTAGCTGCTTAGTGAGatcagtttctgacagacagagagagtgtcTGTCTTGCATCCTCTCCTGCCCTCCAGAACTTTACAAAGgcaCCATGGCCAAAATAGTGGTCCAGCAGCCCCAGCCCGTTGTGATGATGGCCTCCTCCAACCAGTGGGGCTCAGGCATCTGTGACTGTGGTGAAAATATAGCAGAATGCTGTTTCGGGTTCTGGTGTCTGCCCTGTTTTGCCTGCAGCACATCTAAGAAGTTCGGAGAGTGTTTGTGTTTACCGCTGCTCGAGTTCGGCTTCATTCCACCAATCACTTTAGCCATGAGGTCATCAATGCGCCAGCGCTACGGCATCGAGGGAAGTATCTGTAATGACTGTGTCTATTCCTTCTTCTGCTGTCCCTGTGTTTGGTGCCAAATGTCACGAGAGATGAAAAAACGTAATCAACCAGTCACATTCATCAACAGCCGAGCAAAGTGATGACCATCATTACCAGCATCATCAcagataattattatataacataaaaaaattaatagaaatAAACATGCATTGTTTTCAGATTACTGATATGTTGATTAAGCAAACAGTCAAAATGTGCAGATTTGGTTGGTGAATTCACTATGCTCTATGATTAAGTTCCACTAGTAGCTCACCTTATTTACTGAAGAATTGCTCCGAAATTATACAGCCTATTAAATGTGAATTGTTATTACTGagttactaaaatatttttgtctttgtattttttgcaatcACATggcctaaataaataattttacacatatttagttttcattcatatttacatatagAGGTATAGATATTTACAAACTGGTTTGtat
>XM_007250167.3
tgaCAAGTTCAACCAGTGACATATACTGAAAGGTGTGGGTATGACTGAAGTGAGTGTCTATCTGTTCATCTTCATCCTGTAGCTGCTTAGTGAGatcagtttctgacagacagagagagtgtcTGTCTTGCATCCTCTCCTGCCCTCCAGAACTTTACAAAGgcaCCATGGCCAAAATAGTGGTCCAGCAGCCCCAGCCCGTTGTGATGATGGCCTCCTCCAACCAGTGGGGCTCAGGCATCTGTGACTGTGGTGAAAATATAGCAGAATGCTGTTTCGGGTTCTGGTGTCTGCCCTGTTTTGCCTGCAGCACATCTAAGAAGTTCGGAGAGTGTTTGTGTTTACCGCTGCTCGAGTTCGGCTTCATTCCACCAATCACTTTAGCCATGAGGTCATCAATGCGCCAGCGCTACGGCATCGAGGGAAGTATCTGTAATGACTGTGTCTATTCCTTCTTCTGCTGTCCCTGTGTTTGGTGCCAAATGTCACGAGAGATGAAAAAACGTAATCAACCAGTCACATTCATCAACAGCCGAGCAAAGTGATGACCATCATTACCAGCATCATCAcagataattattatataacataaaaaaattaatagaaatAAACATGCATTGTTTTCAGATTACTGATATGTTGATTAAGCAAACAGTCAAAATGTGCAGATTTGGTTGGTGAATTCACTATGCTCTATGATTAAGTTCCACTAGTAGCTCACCTTATTTACTGAAGAATTGCTCCGAAATTATACAGCCTATTAAATGTGAATTGTTATTACTGagttactaaaatatttttgtctttgtattttttgcaatcACATggcctaaataaataattttacacatatttagttttcattcatatttacatatagAGGTATAGATATTTACAAACTGGTTTGtatgtataaatacagctctgtgaaaaattaaaagaccacaaaaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199810 False 883 TUCP 0.40 4 39117310 39123788
XM_007250167.3 True 953 mRNA 0.39 4 39117267 39123815

Neighbor

gene id symbol gene type direction distance location
LOC103036765 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 coding downstream 12414 39101117 ~ 39104853 (-)
LOC103037604 NA coding downstream 16492 39091555 ~ 39100775 (-)
LOC103037073 NA coding downstream 32089 39082567 ~ 39085178 (-)
LOC103037934 LOC108434867,LOC108267153,LOC107572570,LOC107753961,LOC107659726,LOC105903083,LOC107667731 coding downstream 47716 39065680 ~ 39069551 (-)
LOC103040853 LOC108434861 coding downstream 111038 39000095 ~ 39006229 (-)
LOC103036164 LOC108434831 coding upstream 3084 39126899 ~ 39137179 (-)
LOC103035548 cldn7a,LOC103035548,LOC108434869,LOC107667734,LOC107753993,LOC108268068,LOC107572167 coding upstream 29422 39153237 ~ 39161707 (-)
LOC103034907 chrnb1l,LOC108434832,LOC108268067,LOC107753962 coding upstream 33334 39157149 ~ 39195199 (-)
chrnb1 chrnb1,LOC108267171,LOC107659727,LOC107664276,LOC103358387 coding upstream 75047 39198862 ~ 39244281 (-)
LOC103028039 tmem102,LOC108434872,LOC108267795,LOC107750772,LOC107659729,LOC107564774,LOC107560290 coding upstream 343548 39467363 ~ 39484662 (-)
G147649 NA non-coding downstream 15053 39078300 ~ 39102214 (-)
G147637 NA non-coding downstream 91550 39023013 ~ 39025717 (-)
G147629 NA non-coding downstream 190468 38926385 ~ 38926799 (-)
LOC111194220 NA non-coding downstream 365910 38747818 ~ 38751357 (-)
G147514 NA non-coding downstream 435589 38639308 ~ 38681678 (-)
G147643 NA non-coding upstream 15206 39139021 ~ 39141977 (-)
G147645 NA non-coding upstream 25277 39149092 ~ 39151181 (-)
G147691 NA non-coding upstream 136082 39259897 ~ 39260652 (-)
G147693 NA non-coding upstream 139010 39262825 ~ 39265172 (-)
G147698 NA non-coding upstream 198776 39322591 ~ 39323343 (-)
LOC103036951 ponzr4,LOC108434830,LOC107659705,LOC107750795,LOC107667736,LOC107753979 other downstream 3651 39111148 ~ 39113616 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other downstream 12353 39100098 ~ 39104914 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other downstream 56208 39041593 ~ 39061059 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other downstream 99635 39014002 ~ 39017632 (-)
LOC103040134 NA other downstream 104850 39006986 ~ 39012417 (-)
fgf11 fgf11,fgf11a,LOC107664286,LOC107753963,LOC107750771,LOC107659728 other upstream 141534 39265349 ~ 39398012 (-)
tmem256 tmem256,LOC107564775,LOC107659713,LOC107560291 other upstream 366746 39490561 ~ 39498234 (-)
ufsp1 NA other upstream 692092 39815907 ~ 39817763 (-)
G147828 NA other upstream 696936 39820751 ~ 39821575 (-)

Expression


Co-expression Network