G147807 (nlgn2,nlgn2a,LOC103033407,LOC107753966,LOC107564776)


Basic Information

Item Value
gene id G147807
gene name nlgn2,nlgn2a,LOC103033407,LOC107753966,LOC107564776
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39771982 ~ 39776934 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU199983
TTGGCTATGAATGTATTTAATGTTCCCCAGATCAGAGTCACAGCATACAGTGTGTAATAATTTCtaaattaaacagaaatatcatctccttatttatatattttttacttttcttttctttttttaataatcatctatttttaaatccattatTAACATGTTTTCTTCATCTCAAGCCTTGGGTTTCTGATTTTCAACAAAGAAAGTAAAAACAAGACAACAGGTGCACGTTATCCACGCAGCGCAGCTCATCATCTGATGGACTTTTCTCCTTCTTTTGTTCTACATTATTCAGACCTTCATACTCACATAGTCTTTAGAAATATGGAGAACAATTTAAACATGTTGAAATGACATTAAAAAGGATGTTGAGTTTGTGAACAACATGAATGTCTGAATATGAAACAAGCAAAAACTGACTGACAACCCCTGACTAAACCAGACTCAACTAATACTGCAGTCTTAATGTTGATATTTAGCGTACAATAAATGCTGTAGGATTCATGAGCAGCTTTAGGCCGAGCTGCACAAACATTCAGTGGCTTCTTCATTTATAAATGAGATGACTCTAACACTCTTTATTGAACTGGCAGAATGAGATTAATGTAAGGGCTTGATTAGGCATGCTGATTAATGATTAGCTGATTAATGATGTAGTGCAAGTGTACGTCTTGGATTCTTAATGCATTATCTCTGAAAAGAACAGCATCCAGCTGTACCATAGACCCATTTACTGCATCGTTACTCCTTAATGccctaaaatgaacaaaacaagaGAGAACGAGGCTTTTTTTACGCAGCAGTTCGCTGGTGGCCGGTTTCCAATCTTGCACCTGTTGTCCTGCTCACAAAGTAAGCAATTCATTCactcagaaaacaaacaaacaaacaaacaaacaagaaactgcatatttacaaatattttgttggTTTGATCTTACACTTAAAAATGTACAGATAAGTCCTCTGTTCTGTGACTGGCGCTCACCATGTGCCACCGTATGTCAAGAAGAAAAAGTCTCTACTGTAATTTTATCACAATGTCGCCCTCTAGTGGTGGAGCATACAAAAACAGAcggaaaataaaagaaagcaagAATTTCAAAGTTCATGTTGTTTTTGtatgcagctctctctctcgtccACTCCAGGTTTGCTTAGATAAGTCCAAAGCTCAGAAACGTTTTCTACCACGGATAGTTATGGATGGGGAACACTGGTCCAACCAGTGATACTTCAAAGCATTATTCACAGTAGCGTTCACGCTACAAAAgtcctgttttatgtttttttttttttttatgtgtgccTCCAGGCTCTGATCCAGTACCAAAGATTGTTGTTGTCTCGATTGTCCAGCATCTGGATCAGGATCTCCAGTATGCTAACTCAGCAATGCTAATATTTTCatatgttacagtgtttctgTGCAGCAATTGACTTTTGAGTTCCTGCTGAGCCTATGTGAGCAGGCCACACCAGCAGCAAGCAGTCCAGCAGTTGTTCCACGTACGAACGAGCCTGTAGAAAAGGAATGACGCACCTCCACCACAACAGCCCGTCACTCTCACGAATATAAGTCAGGATAAGACAGAAATAATACTAACCTGTGCTGAAAGAAACTGATGTGACGAAGGCAAATGAAGAGCTATGGTGGATGTTTATGCTGTGGTCCCTATGTTCTCTAATGAAAAGACCAGATTTAGACCAGTCCTAAACCTCAGGCCTCAGGTCTTACTGGAGCTACATTAGCCTAACAGGCTATATGTATTGTTGACAAGGTCAAATAATAAGCATGGCAGGCACCAGAACAATACTACATGCATCCTGAAAGACCTTTTGTTTGTCTTGACCAATTTTGTTGGACTAACAGGCCTTCTGATGTCTGCCTCCATTGCACAGGCATTGCACAGTCCTTTGAGGCCTGTCCACTGAGGCACAACATGGGTTAGCTAccaaaaagcactcaaaagatccagaagcctgtaaatgaaTGCTTAATGTAAATCTCATCAGCTATTCTATTAGCTAAGCCTAGCTCACTGGGccttctctgttctctgtgctTGTTGTAACCACATAGAAGGAGCGTGTGGGGTTACGCCATATATGGATCTGATGTTGGAGGAGCTACATCAATAAAATTGGTTCTCACGCGTTTAAAAGATTCACTATGTTCTTCCGACTGTGCTGAACGCTAAGAGAGCCCGAgcagaagagaggagaggagtaaGGAGAAGGAAAAGCTAACGAGGGAGGCTTTTCCAGCAGAACCCATTATTCTACCATCTTTCTGACTCTTCTTCTcatctgattctctctctctctttctttcactctaatTTCTTTCCAATTAGCAGTATTCTTGTGAGGCACTGCTGACATGCCGCTCACagctcactctcacactcaaacgctcaaacacacacacacacgccagcGCGCACACACATATGCTGGCGTTCTGACGTAAAACATGACTAGCGCTCCCCAAGCAGAATTAGCATGCTGTGGAAATATAAAGGTGCAAACAGTAGGAGAGAGTGAAAATGAAGGAATGACAGACGGTGTGAAGGTtgaaagaaaaccaaaaaactGAACAAACCCTGTAAACAAATTTACCAAGCCCTATTTCAGAAGCTTGGGAGGAGCTACATATGCTTACCACGTGTGCGACGGCAGCGGGCCAGGCTAGACGATCATGGGCACGTTGCTCTGGTAGTTAGTTCACTAGTATAGTCAAAGGTATAGTATAGTGCCGCCATGATCAGTGGCCAACTGCGAAACAATAGCACCAATACTCGTACACTGATATGAAAGAATGAGGAATTTAATGAGGACATTAGCAGGGCATGGTTAAAAAGTGAGATGCGACATACGCAAGAttttttttatgtttgactAATTTGTGAAGACTGCTACTGAGGACTAGTCGCTCTTGCAGATggacactgatttttgtaaaTGAAAAACGGAACTTTCAACAAGGAAATGAAGCAAATATGAACAATTAAGCCTCAAATACCTTAGAAGTGTGCTGTGAGTTTACCTTCCTCGTCgtcttaaaaatatttcatgCATAGTTCCCACTGAGCaaaccttttaaatatatatcattctctgtatgtatatttttttatatttatatatagatatatatatctatctctaTACATGTACAAATTCTCATTCTAagattaaaaacacacagccaCAATCTAACAGATGTTGGGGAGCAAATGACCAAACAAAGCATTGCGATAAAGCAAGTGAAAAAGCTAGAGTGTGATCAGGTTGGCACTTGTAACCTTCTCTTCAGTTCCATGAAGTCGTTTTTTCTCTTGGTCTATCTTGTTGCAGGTGTTTACAACAGTACTTGGCACCAAGATTGCTGGTAGAAAGAACATATCCATGTGTTGTTGTGTGTCATTTGCTTACTGCACATATGTTTCCTATAAAAAAGGGCTCCACTGTGCATTACACAAGGTCACAGAGCATTTTCGGCCAGTGCTCGAAGAAGAGGAGAATGAGCTGATAATGAGGGCGCAGTAATGGAACAATGGAGAGAGTAAAGAAGAGAATAAGACATCAGAGGGATCTGATGAGAGACAAGATGAAGGGCTGATAAGGGAAGTCTTTCATCTATGATGGGGAAAGTGAAGAAactaggagaaaaaaaaatccttctatcattctctctctctcttctctgcaTCAGATCTGCCATGATAACGTCACTTGCTCGCCCACTAACTACTTGGTTCCACTTTGAGAAATGTGGAAAATAATTTTAACCCTTGACCATTAATGGACAAAACGTCACTGTCAGCCACAGCCTTGCCTCACAGCAGAGTCTGAAAAAAGAAGCTGCCTCACTGGCTTCAAAGATTACAGCCATTCATGCTGCCTGTCTGCATTTGTGAGAGCACCACCGGGGGGTGCTGTTGCGCTTCTTCAACAGAGAGAATTTTTAAGACTGTAAGAGAGAGGGCTTTTATCATgggaacagagaaagagagagagtaaaaggaGGGGTCGTGTGAAAGGGTGTGTtgtcctccctctctccactagagggcagtaaCTATACACGAGTGGTGGAGTGCTGGTGGGGCAGAGTGTTGTTGTGGCCTGTAGCGGTGGTGGGGAAGGTGTTGAAGGCGTGGAGAGGCTGCATTCCGGTTATGGTGCTGGGGATCATGGTGATGGTGTTGGGAGTCATGAGTGGCACGTCGTCGGGTGCCCGACGCAGCGCCAGCGTGTAATCGGGCGGGCAGGCTGGCCGCAGGATATCGTGCGGCCGCAGTGGTTCCATGTCGTGATGGGCGTCGTGCTCAGAGTGTTTCATCTGTAAGGACATTATCTCTTCTTCCTGGCTGTGCGCTAAGTCGTTAGCCGGGACGCCGCGCTGCGGGGACAAGCGATGCCGGCGCATCTCGTGCCTCTTGTCTCGCTTGTAGTAGAGAGCAGCGAAGGCCAGGATGTTGAGGAAGAGGAGTGAAGCACCCACAGCTACCGTCACGCTTAGCTCCGTGGAATAGTCTCGCGTGTCGCCGGGAAAAGGTGAGAAGCGAGGCCGCTCCGAGCTGTCTGGATCAGGGTCCGGAGGGAAGGTGGGGTATGGCATGCGGGTGGTGCGTGGGCCCTGACCCTTCCAGGACGGAGGTCGGGTAGTCCCTGGTGGTAAGCGAGTGGTTGTGGAGCTCAGGAGCTCCTCGTGTAGGTTGTGGAGATGAGGCACCAGCTCCAGCCAGAAGGCCACCTTGTTGGCTCGGTAGTTGTCACGGATGCGTGGCTTTAGGCCGATGTGGAGGTACTGCTTGTCCTTGGAGTTGAACTTGGTCCAGATGACCTCCTCAAAGCGGTTGGGCTTTGTGTGGATGAACTTGGTGTCCTGGGG

Function

symbol description
nlgn2a Predicted to enable neurexin family protein binding activity and signaling receptor activity. Predicted to be involved in several processes, including neuron cell-cell adhesion; synapse assembly; and synaptic vesicle endocytosis. Predicted to act upstream of or within cell adhesion and synapse organization. Predicted to be located in inhibitory synapse and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in digestive system; gill; gonad; heart; and nervous system. Orthologous to human NLGN2 (neuroligin 2).
nlgn2 Predicted to enable cell adhesion molecule binding activity; neurexin family protein binding activity; and signaling receptor activity. Involved in positive regulation of insulin secretion. Acts upstream of or within positive regulation of protein localization to synapse. Predicted to be located in inhibitory synapse. Predicted to be integral component of postsynaptic membrane. Predicted to be active in GABA-ergic synapse; cell surface; and glycinergic synapse. Predicted to be integral component of postsynaptic specialization membrane.

NR:

description
neuroligin-2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199983 True 4900 lncRNA 0.44 3 39771982 39776934

Neighbor

gene id symbol gene type direction distance location
LOC103028039 tmem102,LOC108434872,LOC108267795,LOC107750772,LOC107659729,LOC107564774,LOC107560290 coding downstream 287320 39467363 ~ 39484662 (-)
chrnb1 chrnb1,LOC108267171,LOC107659727,LOC107664276,LOC103358387 coding downstream 527701 39198862 ~ 39244281 (-)
LOC103034907 chrnb1l,LOC108434832,LOC108268067,LOC107753962 coding downstream 576783 39157149 ~ 39195199 (-)
LOC103035548 cldn7a,LOC103035548,LOC108434869,LOC107667734,LOC107753993,LOC108268068,LOC107572167 coding downstream 610275 39153237 ~ 39161707 (-)
LOC103036164 LOC108434831 coding downstream 634803 39126899 ~ 39137179 (-)
pop7 pop7,LOC107750778,LOC107753970,LOC107595279,LOC107560286 coding upstream 68956 39845890 ~ 39848520 (-)
trnan-guu_3 NA coding upstream 834605 40611539 ~ 40611612 (-)
trnan-guu_4 NA coding upstream 835024 40611958 ~ 40612031 (-)
trnan-guu_5 NA coding upstream 835443 40612377 ~ 40612450 (-)
trnan-guu_6 NA coding upstream 835862 40612796 ~ 40612869 (-)
G147714 NA non-coding downstream 281791 39489370 ~ 39490191 (-)
G147700 NA non-coding downstream 383875 39382713 ~ 39388107 (-)
G147698 NA non-coding downstream 448639 39322591 ~ 39323343 (-)
G147693 NA non-coding downstream 506810 39262825 ~ 39265172 (-)
G147691 NA non-coding downstream 511330 39259897 ~ 39260652 (-)
G147869 NA non-coding upstream 111255 39888189 ~ 39893258 (-)
G147872 NA non-coding upstream 113183 39890117 ~ 39947430 (-)
G147897 NA non-coding upstream 334370 40111304 ~ 40111753 (-)
G147914 NA non-coding upstream 363302 40140236 ~ 40185348 (-)
G148012 NA non-coding upstream 752156 40529090 ~ 40532670 (-)
tmem256 tmem256,LOC107564775,LOC107659713,LOC107560291 other downstream 273748 39490561 ~ 39498234 (-)
fgf11 fgf11,fgf11a,LOC107664286,LOC107753963,LOC107750771,LOC107659728 other downstream 373970 39265349 ~ 39398012 (-)
LOC103036465 NA other downstream 648167 39117267 ~ 39123815 (-)
LOC103036951 ponzr4,LOC108434830,LOC107659705,LOC107750795,LOC107667736,LOC107753979 other downstream 658366 39111148 ~ 39113616 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other downstream 667068 39100098 ~ 39104914 (-)
ufsp1 NA other upstream 38973 39815907 ~ 39817763 (-)
G147828 NA other upstream 43817 39820751 ~ 39821575 (-)

Expression


Co-expression Network