LOC111194401 (tmem88,tmem88b,LOC104964151,LOC102237254,LOC103375639,LOC108410821)


Basic Information

Item Value
gene id LOC111194401
gene name tmem88,tmem88b,LOC104964151,LOC102237254,LOC103375639,LOC108410821
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40602296 ~ 40622087 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU200288
ggagactGAAAAGATGCGCCTCCATTTTTCTCAGTTCAGCTTTGCCCTTTTATTTTGTTCAAGTGTGGACTTTGGTGGTTCAAGTTCGAGTGTGTGACAACAaaCAGCCCCCTCCTAGACCACGGTGCTGTGTGGCAGGCAGGTTCTTATAGACGGCACGACTGTACGGGATGAAGCAGAGGCCTAGCTGGAGGTGACGAGCCAGTCTGCAGTACGCAGCCAGTGCCAGGACCAGGAGTGGGGTGACGAGGAGGAAGCCCACCACTAACAGCGCCACACATCCCCCATCGCTGAGCAGGTCCGAGCAGTAGGCGATTTTTCCGTGTGGGCGCACCTTgtgaaggaagaagaagagtgtGCTCAGATACCAGTGAAGTAGAAAAAAAGAGGATGCAGtgatgagacagagagaagacatCAAAAGGAGTATGACGCGAAGAAAGGATTCTCCGTTTATTTGTGACagaataaagtatgcagaaatacagatacaggactacagtctgtaattattgaaCTACAGTTATATGtgctcagtggagctaaaatatagatttctttatttttatcacaaaattatttatatgtaagtgcaag
>TU200289
ggagactGAAAAGATGCGCCTCCATTTTTCTCAGTTCAGCTTTGCCCTTTTATTTTGTTCAAGTGTGGACTTTGGTGGTTCAAGTTCGAGTGTGTGACAACAaaCAGCCCCCTCCTAGACCACGGTGCTGTGTGGCAGGCAGGTTCTTATAGACGGCACGACTGTACGGGATGAAGCAGAGGCCTAGCTGGAGGTGACGAGCCAGTCTGCAGTACGCAGCCAGTGCCAGGACCAGGAGTGGGGTGACGAGGAGGAAGCCCACCACTAACAGCGCCACACATCCCCCATCGCTGAGCAGGTCCGAGCAGTAGGCGATTTTTCCGTGTGGGCGCACCTTgtgaaggaagaagaagagtgtGCTCAGTGGAGTGGCAAAGAAATCCAAACACCACCATGACTGTGGCGGGTGTTAGGATCAGGCCGAACACCAGGCCGGCCAGGCACGCATTGATGGCAGCTATCACCAGATTCTGCGCCGTAACCAGCACTGAACATGCCCAGCAGTCCAGAGACCCCCTCAGCTCTAAAGGGGCCTCACCACTTCCAATCTCTGCTGTGGAATATGGGGGAGGCACCACAACCCCTGACCCACTGACAGGCGTCCCAGCCCTAGCTGTGGAGGCCAGGGAGTTGCTGTGCTGAAGGTGggactgctgctgcagctgctgatgatgatggtgaagaTGGTTGTGGGGAGGAAGCTCCTCAGATAGATCCAGAACTTGGTGGTGGGCTCCTTTTTCAAGAGTGCCGTTTAGACTCATGGTGACCTGCACAGAGGGAGTTGATGGTGTTcatctttcacttttttttagttgtttaattttacacttttaaattttaaattcatAATATTCCTTTGCCTCATAATGAGGCAacaatcagacaaatataacctgagtaaatatataaaaaaaaggaaatacttTGCAGAAAACATCCCAAGGCATTGAAATGGAAGGTTTTTCAAAGCATTGCTTACAAATGTCTATTgtaatttcattttttcttttaatatattacagtttattGTCAATTTTCATCAGTTCCTGATGCCAAATTGTGTTATGTAATGCTCCTGAGTATCTGTGTTTGCTCTCCAGATCAGAAGAGTTCATAGCAAGGGCAGATCTCTTATCGCCAGGAAGCCAAATTTGTGTGATCACTTGATCTCTAATTGGGTTCTTTATCAGATGACTATCTGAAAGCTGATTGGCCCTGTGTACCGGAAGCCAATTGGAATTTGACTTTGTTCTAAGCATGACTGATAAGGTGAAGTGATGAAGAGAGTGAGCCTTGACAAAACAATTTTActatctgcatgtgtgtgtgtgtggggggtggggggggggggcgggggggggggggttacagTAAGCAGTGTTACTGGCTGAAATTTGCTGGCAGATTTTCAAT
>XR_002651069.1
gagggagactGAAAAGATGCGCCTCCATTTTTCTCAGTTCAGCTTTGCCCTTTTATTTTGTTCAAGTGTGGACTTTGGTGGTTCAAGTTCGAGTGTGTGACAACAaaCAGCCCCCTCCTAGACCACGGTGCTGTGTGGCAGGCAGGTTCTTATAGACGGCACGACTGTACGGGATGAAGCAGAGGCCTAGCTGGAGGTGACGAGCCAGTCTGCAGTACGCAGCCAGTGCCAGGACCAGGAGTGGGGTGACGAGGAGGAAGCCCACCACTAACAGCGCCACACATCCCCCATCGCTGAGCAGGTCCGAGCAGTAGGCGATTTTTCCGTGTGGGCGCACCTTgtgaaggaagaagaagagtgtGCTCAGATACCAGTGAAGTAGAAAAAAAGAGGATGCAGtgatgagacagagagaagacatCAAAAGGAGTATGACGCGAAGAAAGGATTCTCCGTTTATTTGTGACagaataaagtatgcagaaatacagatacaggactacagtctgtaatta

Function

symbol description
tmem88b Predicted to enable PDZ domain binding activity. Predicted to act upstream of or within negative regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TMEM88 (transmembrane protein 88).
tmem88 Predicted to enable PDZ domain binding activity. Involved in negative regulation of canonical Wnt signaling pathway; protein localization to plasma membrane; and protein stabilization. Located in cytosol and plasma membrane.

NR:

description
transmembrane protein 88

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200288 False 597 lncRNA 0.47 3 40602296 40622084
TU200289 True 1416 lncRNA 0.48 3 40606339 40622084
XR_002651069.1 False 515 lncRNA 0.50 3 40602381 40622087

Neighbor

gene id symbol gene type direction distance location
pop7 pop7,LOC107750778,LOC107753970,LOC107595279,LOC107560286 coding downstream 753776 39845890 ~ 39848520 (-)
LOC103028039 tmem102,LOC108434872,LOC108267795,LOC107750772,LOC107659729,LOC107564774,LOC107560290 coding downstream 1117634 39467363 ~ 39484662 (-)
chrnb1 chrnb1,LOC108267171,LOC107659727,LOC107664276,LOC103358387 coding downstream 1358015 39198862 ~ 39244281 (-)
LOC103034907 chrnb1l,LOC108434832,LOC108268067,LOC107753962 coding downstream 1407097 39157149 ~ 39195199 (-)
LOC103035548 cldn7a,LOC103035548,LOC108434869,LOC107667734,LOC107753993,LOC108268068,LOC107572167 coding downstream 1440589 39153237 ~ 39161707 (-)
trnak-cuu_8 NA coding upstream 44673 40666760 ~ 40666832 (-)
trnas-gcu_3 NA coding upstream 133873 40755960 ~ 40756041 (-)
ankrd53 NA coding upstream 163425 40785512 ~ 40792759 (-)
LOC103041524 NA coding upstream 201994 40824081 ~ 40833786 (-)
LOC111194366 NA coding upstream 286770 40908857 ~ 40909862 (-)
G148024 NA non-coding downstream 5263 40596131 ~ 40597033 (-)
G148012 NA non-coding downstream 69626 40529090 ~ 40532670 (-)
G147914 NA non-coding downstream 416948 40140236 ~ 40185348 (-)
G147897 NA non-coding downstream 490543 40111304 ~ 40111753 (-)
G147872 NA non-coding downstream 654866 39890117 ~ 39947430 (-)
G148052 NA non-coding upstream 7384 40629471 ~ 40629687 (-)
G148057 NA non-coding upstream 12242 40634329 ~ 40641995 (-)
G148058 NA non-coding upstream 21059 40643146 ~ 40643407 (-)
G148056 cunh20orf27,c7h20orf27,si:ch211-74f19.2,c1h20orf27,LOC104943354 non-coding upstream 53872 40675959 ~ 40692649 (-)
G148077 tex261,LOC106577837 non-coding upstream 150563 40772650 ~ 40782001 (-)
G147828 NA other downstream 780721 39820751 ~ 39821575 (-)
ufsp1 NA other downstream 784533 39815907 ~ 39817763 (-)
tmem256 tmem256,LOC107564775,LOC107659713,LOC107560291 other downstream 1104062 39490561 ~ 39498234 (-)
fgf11 fgf11,fgf11a,LOC107664286,LOC107753963,LOC107750771,LOC107659728 other downstream 1204284 39265349 ~ 39398012 (-)
LOC103036465 NA other downstream 1478481 39117267 ~ 39123815 (-)

Expression


Co-expression Network