G148056 (cunh20orf27,c7h20orf27,si:ch211-74f19.2,c1h20orf27,LOC104943354)


Basic Information

Item Value
gene id G148056
gene name cunh20orf27,c7h20orf27,si:ch211-74f19.2,c1h20orf27,LOC104943354
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40675959 ~ 40692649 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU200333
TGCAGAGGGAGTGTTAGAGCAGgtaataaaatgtgcagtgcAGAGTGCCTCCTGGACCAGGATTAGGAAACACTGGGCTGAGTGCTCCTGATTTTTGGGCAGatttcagaacaaaaaaaaaatgttccaggCCCACTTCTACATTACAGATATGCTGAACTGATGAAGTTTAAAGTTACATGATTAGTCAAATCCTTGCCAATCACTTTGCTCTGAGTCGTACTCAAGTTCAGCTCCAATGCACCGCACCCCTTCTAGCAACATCGGGGTCCCGTGGTGTCGatCCATTACACGGGCATGAACTTTGACTTTTAGGCACACATCCTCTTTGCTCTCGCTGACTATCAGCATCTCCTCGCACAGCACCCCCTCCTGGTGAGCCATATACTCACACGTCACCTTCAGCCCCCCATCAGGGGCTGGTGTAATCTCTTTTATGTGGAGGTAAGGGTTGGGCACTGGAGCAGGACACACGTCTTTCCCAAGTGCTGGAACCTCCGGCAGTGTGAAAATGATCTCATACTTGTGCTGTGTTTTCAGAAAGCCACCTTAACCAGGAAGTTTCCATCTGACTCCGGAATCACCATGACAACAGAGTCGTGCAATTTCTCGTCAAAGTGTACATGAGAGTGAGCggtggcggcggcggcggcagcagcagcattctCCTCAGCAAAACGAACGCCTCCCGCTTTAGAGGAAACTGTGGAGTCTTTCTTGGCAGTGGCCATGCTCATATCTGTCATGACTGTATGCTGAGAGAAACCTTCACAGCCTCATTTTGTCATCGGGCCCTAAAAaccctagagagagagagaagattattattattcatttagtgTTCCTAATAAAACTCATGATATCCACTTGTTAAAAGTAAAC

Function

symbol description
si:ch211-74f19.2 Orthologous to human C20orf27 (chromosome 20 open reading frame 27).

NR:

description
PREDICTED: UPF0687 protein C20orf27 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200333 True 882 lncRNA 0.48 5 40675959 40692649

Neighbor

gene id symbol gene type direction distance location
trnak-cuu_8 NA coding downstream 9127 40666760 ~ 40666832 (-)
trnan-guu_8 NA coding downstream 62252 40613634 ~ 40613707 (-)
trnan-guu_7 NA coding downstream 62671 40613215 ~ 40613288 (-)
trnan-guu_6 NA coding downstream 63090 40612796 ~ 40612869 (-)
trnan-guu_5 NA coding downstream 63509 40612377 ~ 40612450 (-)
trnas-gcu_3 NA coding upstream 63311 40755960 ~ 40756041 (-)
ankrd53 NA coding upstream 92863 40785512 ~ 40792759 (-)
LOC103041524 NA coding upstream 131432 40824081 ~ 40833786 (-)
LOC111194366 NA coding upstream 216208 40908857 ~ 40909862 (-)
LOC111194367 NA coding upstream 327679 41020328 ~ 41023008 (-)
G148058 NA non-coding downstream 32552 40643146 ~ 40643407 (-)
G148057 NA non-coding downstream 33964 40634329 ~ 40641995 (-)
G148052 NA non-coding downstream 46272 40629471 ~ 40629687 (-)
LOC111194401 tmem88,tmem88b,LOC104964151,LOC102237254,LOC103375639,LOC108410821 non-coding downstream 53872 40602296 ~ 40622087 (-)
G148024 NA non-coding downstream 78926 40596131 ~ 40597033 (-)
G148077 tex261,LOC106577837 non-coding upstream 80001 40772650 ~ 40782001 (-)
G148088 NA non-coding upstream 138746 40831395 ~ 40831664 (-)
G148120 NA non-coding upstream 182778 40875427 ~ 40876486 (-)
LOC111194403 NA non-coding upstream 241751 40934400 ~ 40935933 (-)
LOC111194404 NA non-coding upstream 255878 40948527 ~ 40950045 (-)
G147828 NA other downstream 854384 39820751 ~ 39821575 (-)
ufsp1 NA other downstream 858196 39815907 ~ 39817763 (-)
tmem256 tmem256,LOC107564775,LOC107659713,LOC107560291 other downstream 1177725 39490561 ~ 39498234 (-)
fgf11 fgf11,fgf11a,LOC107664286,LOC107753963,LOC107750771,LOC107659728 other downstream 1277947 39265349 ~ 39398012 (-)
LOC103036465 NA other downstream 1552144 39117267 ~ 39123815 (-)

Expression


Co-expression Network