G148057


Basic Information

Item Value
gene id G148057
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40634329 ~ 40641995 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU200334
TAAGTAGAGCTAGAGAGTTGGGTGCTCCTTTGGAAGAGATCACGATGGCCATATATACAGAGTCTTAATCCAAGATTACTGCCTTTAAGTCTGCACTATGTGGGGCAGTTCTGGCCGACAATTACAGAGGATGGATTATTTATCTAAAAGTTATATGATGAGAGACTAGTTAATGCATGTtacaacacaatttttttttttttttaaacactgtatagGTATGCATGTATTAAAGCACCTTTAAATTGTCTAGGGGTACGAGAGGCATATAACTGTGAAGGTTGGATAAGTAGGTTAGTGCATGTGAAACTGTGAGGGAGAAAACCACAGAGAACTTTCGATTTTAACAATTTAATGAAACCACAACTTTAGTATAAACTGTGAGACAATGGATTCACCAATTACAGGCataatattcatacatacaaaaaaagtaaatcaaaCCACTTCAAACTTAAACAAAAGAAGGGCTGAATTTGGGACGGCACCATGGGAAAGAAtataacaacagaaaaacataaTTCATAAACTAACtacacaaagaaagaaaacaatgtaaacaaaaactaaCTACACTAAACTCAAcctaataaattaaacatacagATGGTAGTCCCCACCCCTTACATAGGGAGTTTAACATTGGAGGCCTTCATTATGCTAATGTATGAGCGCACTCCttcctaaaaataaataaatatatatactaataataacatCTGTTAGCCATTGTAGAACTGTTTATCAGAAactgtgtagtgttatagtttgtGAGACACATGGTTTTCTCCCCTACCAAACCCCTGAGAAATTCCGGCAGCAACAGGATGGAGCTTATatcaggcccaaaaaaaatccagctcgaCCTGGGTGGAGCCTGTGCACATTCTGCCTGAGCCTGATCTGACCAGCCCCATAAACTGCTTTTGTGAGCCAGATTTATACCTGccatatttttttagtaagtagggTGTTAAAACTTAGCTTTTTAAAAGAGTGAACAgggaaatctgttcagaataatGTTAACActgcatagacctattatttaaggacaatgtttattaagaactgaTCCCCCCgtttactctaatataattaatgtctaaaaatataaaacactttctgaataaacttttttttattattattttaggcatACAGCCTTTAtgcaaaacatataaaacaacaagAGGCTACTGCACACTCACTAAACTGAAAGAGACCAAGAATATTAACAATTTACAATTGCTTtcgtctactctaatataattaacactttctgaacaaacgttttttttattttaagcatatagcctAACAGGCTATGCGAAGACTAGCAAAGGAGCCAACATGTGCTCAGTTCTTACTGCAGTTTCCAAGCTGAGtatttataacattctaacttgtgcaaaatttgatttaaaacagttttatttgttactttgctatattgtgataatcACGCCATAGGTTTTGGGTCTGATTCGGgaagaatctaagctctacaacAGGACCACATCCCAAGGATGTACATATGAACAcgcgcacacatacacaaacatgccCTGCGTGCACTGTGCGTGCAACatgtatgtacatatacatatagagGCCTTTGTTGATGAGGTGCGGGTTTGCCAAGCAGCGACATCTGGGATCCAGGATTCTCCAGctACAACTGAAGACGGCGATCTCAACGGCCTTTATTATCAACCCAGATGCCCCTGCTCATCGTCGGCATGCTGTACTGGTGGCAACTAAAGAGGCCCACTCCTACAGGGACAAGAAAAAGATCTTCCCCAAACCTCCACAGAAGCTTCTGCACAAGGCCACATCACTGGCCCATTCTGAGAAGCTTCTTCGAGCAGAGGGGATTCCTGCGCCATCACGTCAGATATGACAtctaaaaaaaagcactgtgcGATGGGTGATGAGGAGTGGGTGGCCAGGCTGAAGACATTTGCTGTTCCGGGTGTTTGGCCCTTTGGAGGCAGGGAACAGGCCAGCCCCAAGGCAGAGAATGTGGCATGAGCTCTATCAAAAGATAGAGACTTGTCCAGCTCAGCTCAAAAGACAGACATCACTTTTTGGGGGTCGTCAGAGCTGTGTATGCGGATTCCACTCTGTAAAGACCACTAGTGAACAACTGTGCCAGCCCCTCTACACCCATATCCATAGTTCCAAACATAGTGACAAACATTAAACGTAGTAATAtataCAACACCCCGTTTTGGTGGAAAACATGTTGCTGCAGCAAAACTGGTCCTTAATCTGGCAAGAAGGCCTTCAACTTGGgTGCTAATGAAGCTGTCTTGGAAAGGTGCAGGCTCTGTCGAGTGGTTCACCAGCATCGGAAACTAGCATCCCCAGATAGTATCCTTTGTTCTGACTTGAGGAGTCTCCAAAGAATCCAATGTGCTGAGGTGTTGTGGACAGGTTTCTGATGGCCAAATCAACCTTTTCCTAAAATCCTGTACGTTGATCACTGGTGTTGCCGTGCACAGGGCCGAACCACAGTGGAGGTTTTGTTCCAGCCTTGGGTGGACGGTAGGATAGTCGTGGGTCTGGACATCTTTCAGTGGATCCACCGATTTAATGCCGTCATTTGCACAGAGTCTCACTCCAAGTATGCTGCTTTTAAGTGTGCACTAGCTGGGGCAGTGCTGGCCTACAACCACACAGACTTGAAGCTGCTATCAAAGCTGTTAGAGCCAAAGATCCGGCAACGATAACTGCAGTCTCGAATGAGGTTGTTGTCTGCCACTACAACACAAGGGAACAGCTAAAACACCACATGCGGATGATCAATCTTGGGGCTCAGAAAACATTCCGACTTATCCATCTAACCATCGAGGAGCAGAAATATTGTACAAGAGTGGAGTAAGCCTCTTCAAAATCACCAACCAAACTAACTAAACCTATCTAGTCTTCAGTAGCTTACCAGGCTCGAGGCGACTTTAAACGCACAACTCGCTACATACGGGCCATGAGCTTGAACCCCAATGTGCGAATGCGTACCCCCCAACAGAGATTAGATCTCCACCCAGGATTGCTGCCAAAAATAAGAAAGACAAAAtaacaaactaaaataacaaatagtGCCTCGAAGGAAGGGCTGAGACAAGGCTACAATCCCAGCTGAGGCATGCTAACTAACCAGAGATGCACTACTTAAACACTGTGAACTCAGACTGGCACTGGACTCACTATTCCCCTAGCAAAATAGAAAATGTGTGAATGAAAGAAAGCGATGATATGGTTTGCCCCTTGCCGCTATGGTTTTGAGCTGCAATGTGCTTCTATCCTTTTTACAGTTCAGAGTtcctttcatatttttttcagtgctaaCTCATCTATATTTCCATTGTCAAATTTCTTCAGGCAGTAACAGCATGCTATAATGTGCTTTTTTGCTCCATCTGGTTTCTAGCCATTGCTGGTTAAGCTAACATTTCCCAGGCATTCTGAGTGAAGCTCAATGAGTGTTGTACAAATCAACACCAGTAGCCGAAACACTGTTCAGAGGCTGGCTAGCTAATTTCAGCATGTTGGGTTGGTTGAAGGTTGTTTTTACGCAGGATGACGTTCCTCCCGTGTGCGAATTCCAAGTGCGAATCCTGACTTGGAAATGTAGGAATTTCTAGTAGGAGGGTCTGCGTTCATGCTCTCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200334 True 3675 lncRNA 0.42 7 40634329 40641995

Neighbor

gene id symbol gene type direction distance location
trnan-guu_8 NA coding downstream 20622 40613634 ~ 40613707 (-)
trnan-guu_7 NA coding downstream 21041 40613215 ~ 40613288 (-)
trnan-guu_6 NA coding downstream 21460 40612796 ~ 40612869 (-)
trnan-guu_5 NA coding downstream 21879 40612377 ~ 40612450 (-)
trnan-guu_4 NA coding downstream 22298 40611958 ~ 40612031 (-)
trnak-cuu_8 NA coding upstream 24765 40666760 ~ 40666832 (-)
trnas-gcu_3 NA coding upstream 113965 40755960 ~ 40756041 (-)
ankrd53 NA coding upstream 143517 40785512 ~ 40792759 (-)
LOC103041524 NA coding upstream 182086 40824081 ~ 40833786 (-)
LOC111194366 NA coding upstream 266862 40908857 ~ 40909862 (-)
G148052 NA non-coding downstream 4642 40629471 ~ 40629687 (-)
LOC111194401 tmem88,tmem88b,LOC104964151,LOC102237254,LOC103375639,LOC108410821 non-coding downstream 12242 40602296 ~ 40622087 (-)
G148024 NA non-coding downstream 37296 40596131 ~ 40597033 (-)
G148012 NA non-coding downstream 101659 40529090 ~ 40532670 (-)
G147914 NA non-coding downstream 448981 40140236 ~ 40185348 (-)
G148058 NA non-coding upstream 1151 40643146 ~ 40643407 (-)
G148056 cunh20orf27,c7h20orf27,si:ch211-74f19.2,c1h20orf27,LOC104943354 non-coding upstream 33964 40675959 ~ 40692649 (-)
G148077 tex261,LOC106577837 non-coding upstream 130655 40772650 ~ 40782001 (-)
G148088 NA non-coding upstream 189400 40831395 ~ 40831664 (-)
G148120 NA non-coding upstream 233432 40875427 ~ 40876486 (-)
G147828 NA other downstream 812754 39820751 ~ 39821575 (-)
ufsp1 NA other downstream 816566 39815907 ~ 39817763 (-)
tmem256 tmem256,LOC107564775,LOC107659713,LOC107560291 other downstream 1136095 39490561 ~ 39498234 (-)
fgf11 fgf11,fgf11a,LOC107664286,LOC107753963,LOC107750771,LOC107659728 other downstream 1236317 39265349 ~ 39398012 (-)
LOC103036465 NA other downstream 1510514 39117267 ~ 39123815 (-)

Expression


Co-expression Network