LOC103046363 (LOC108442840)


Basic Information

Item Value
gene id LOC103046363
gene name LOC108442840
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8061730 ~ 8065229 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228664.3
ACCACGAACCCTCCTCTCCTGACACAGTGCTTCAGCCCAAAGTCCATCACTGAGAGCACCATGCCTGTAGACCTCAATGGGAGATGGGTGCTGGAGACGAACCAGAACTTTGACGACTTTATGAAAGTTCTGGGCATTGATTTCGCCACGCGCAAGATCGCCCTCCTCCTGTCTCAAACCAAGGTCATTATCCAGGATGGAGACAAGTTCACGATTAAGACCCTCAGCACCTTCAGGAATTACGAGATGAGCTTCACTATCGGCGAGGAGGTCGAGGAGTACACTAAAGGACTTGACAACAGGGTGGTGAAGACTCTGATCACCTGGGAGGGCGAGGAATTGGTGTGTATACAAAAGGGTGAGAAGGCCAACCGTGGATGGAAGCACTGGCTAGAGGGAGATAAACTGCACTTGGAGCTGTACTGTGAAGATGTTGTTTGTCATCAAGTGTTCAAGAAACAGGGTTAGTGTTCACTCTCTGTGCTcactaaaaaaatgataaatgtaaaataactgtattggcaatttatatcaataaagaaaccacaaaataaaaa

Function

NR:

description
PREDICTED: retinol-binding protein 2-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228664.3 True 557 mRNA 0.46 4 8061730 8065229

Neighbor

gene id symbol gene type direction distance location
copb2 copb2,LOC107706339,LOC107567551,LOC107694662,LOC107583113,LOC107738120 coding downstream 1500 8038862 ~ 8060230 (-)
LOC103046059 NA coding downstream 24338 8031023 ~ 8037392 (-)
prmt5 prmt5,LOC107694666,LOC107558089,LOC107668985 coding downstream 907839 7134726 ~ 7153891 (-)
LOC103044995 slc7a8a,LOC102238406,LOC107668787,LOC107753926,LOC103388347,LOC103475980,LOC108245892,LOC107377273 coding downstream 938971 7088631 ~ 7122759 (-)
LOC103044685 LOC108438930,LOC107738128,LOC107591391,LOC105021476,LOC106569429 coding downstream 979356 7046380 ~ 7082374 (-)
rbp1 rbp1,LOC108442846 coding upstream 16687 8081916 ~ 8093129 (-)
nmnat3 nmnat3 coding upstream 32625 8097854 ~ 8123480 (-)
LOC103021520 spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810 coding upstream 480261 8545490 ~ 8625989 (-)
LOC103022255 epha4,epha4a,LOC108440631,LOC107583108,LOC107668967,LOC107706332 coding upstream 921244 8986473 ~ 9067576 (-)
LOC103031272 NA coding upstream 1073565 9138794 ~ 9141090 (-)
G139856 NA non-coding downstream 69152 7927095 ~ 7992578 (-)
G139852 carmil3 non-coding downstream 74962 7846496 ~ 7986768 (-)
G139855 NA non-coding downstream 156916 7902073 ~ 7904814 (-)
G139847 NA non-coding downstream 318368 7742978 ~ 7743362 (-)
G139840 NA non-coding downstream 334403 7705345 ~ 7727327 (-)
G139876 NA non-coding upstream 31738 8096967 ~ 8097748 (-)
G139891 NA non-coding upstream 156312 8221541 ~ 8247462 (-)
G139900 NA non-coding upstream 443802 8509031 ~ 8512618 (-)
G139924 NA non-coding upstream 600209 8665438 ~ 8668424 (-)
G139922 NA non-coding upstream 604111 8669340 ~ 8670612 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 878947 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 1117596 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 1372007 6564903 ~ 6689723 (-)
G139587 NA other downstream 1631411 6417385 ~ 6430319 (-)
G139487 NA other downstream 1687021 6304969 ~ 6374709 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 605795 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 1631926 9697155 ~ 9714037 (-)
G140342 NA other upstream 1970174 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 2245868 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 2445860 10511089 ~ 10514807 (-)

Expression


Co-expression Network