rbp1 (rbp1,LOC108442846)


Basic Information

Item Value
gene id rbp1
gene name rbp1,LOC108442846
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8081916 ~ 8093129 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228670.2
AGGACTTGGGTAAGAAAACATTCCACAGCAGGTGAACCTCAGGACCAGTTCAGGATAGCTTATAGACTCGAAGAAGCACATTTAGGTTAAAAATGCCAGGCACGTACCATGGGTTTTGGAAAATGACCACTAATGACAACTTCGAGGACTATCTGAAGGCTTTAGATGTAAATATCGCCGTCAGGAAAATCGCCACCTTGGTCTTCTGTGATAAAGACATTAACCAGGAAGGCGATCACTTTATTATCAGGACCTTCAGTGCTTTCAGAAGCTACACTATGGAGTTTGACATTGGCAAGGAGTTTGAAGAAGATCTGAAAGGAATAGATGACAGGAAATGTATGACAACCGTGACCTGGAATGGAGATAAGCTGGAATGTGAGCAGAAAGGTGAGGTGGAGGGCAGAGGTTGGACCCACTGGATCGAAGGAGACGAGCTTCATGTGGAGATGAGAGCACGAGGAGCAGTGTGCAAGCAGGTCTACAAGAGGAAATAAACCAGGCCCAGAGTGGAACCCCCGGCTGGAGATCAACGAGAGACCACGATAGAGACTCTTACCTGTTCATCCGTCCATCATTTCTTTATTCTTCTCTTGTTAGACCTGTATGAAGTGATTAGATCAACTttatctaaataaaacattgacaaATACACAATTATAtaagaata

Function

symbol description
rbp1 Enables all-trans-retinol binding activity. Involved in lipid homeostasis and vitamin A metabolic process. Located in cytosol; lipid droplet; and nucleoplasm.

NR:

description
retinol-binding protein 1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228670.2 True 670 mRNA 0.44 4 8081916 8093129

Neighbor

gene id symbol gene type direction distance location
LOC103046363 LOC108442840 coding downstream 16687 8061730 ~ 8065229 (-)
copb2 copb2,LOC107706339,LOC107567551,LOC107694662,LOC107583113,LOC107738120 coding downstream 21686 8038862 ~ 8060230 (-)
LOC103046059 NA coding downstream 44524 8031023 ~ 8037392 (-)
prmt5 prmt5,LOC107694666,LOC107558089,LOC107668985 coding downstream 928025 7134726 ~ 7153891 (-)
LOC103044995 slc7a8a,LOC102238406,LOC107668787,LOC107753926,LOC103388347,LOC103475980,LOC108245892,LOC107377273 coding downstream 959157 7088631 ~ 7122759 (-)
nmnat3 nmnat3 coding upstream 4725 8097854 ~ 8123480 (-)
LOC103021520 spsb4a,LOC103021520,LOC108440634,LOC107583109,LOC108267127,LOC107706335,LOC107694659,LOC107561810 coding upstream 452361 8545490 ~ 8625989 (-)
LOC103022255 epha4,epha4a,LOC108440631,LOC107583108,LOC107668967,LOC107706332 coding upstream 893344 8986473 ~ 9067576 (-)
LOC103031272 NA coding upstream 1045665 9138794 ~ 9141090 (-)
LOC103042138 puf60a,LOC108413493,LOC108267407,LOC107599879,LOC107657443 coding upstream 1439694 9532823 ~ 9563587 (-)
G139856 NA non-coding downstream 89338 7927095 ~ 7992578 (-)
G139852 carmil3 non-coding downstream 95148 7846496 ~ 7986768 (-)
G139855 NA non-coding downstream 177102 7902073 ~ 7904814 (-)
G139847 NA non-coding downstream 338554 7742978 ~ 7743362 (-)
G139840 NA non-coding downstream 354589 7705345 ~ 7727327 (-)
G139876 NA non-coding upstream 3838 8096967 ~ 8097748 (-)
G139891 NA non-coding upstream 128412 8221541 ~ 8247462 (-)
G139900 NA non-coding upstream 415902 8509031 ~ 8512618 (-)
G139924 NA non-coding upstream 572309 8665438 ~ 8668424 (-)
G139922 NA non-coding upstream 576211 8669340 ~ 8670612 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other downstream 899133 7168965 ~ 7182783 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other downstream 1137782 6841980 ~ 6944134 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 1392193 6564903 ~ 6689723 (-)
G139587 NA other downstream 1651597 6417385 ~ 6430319 (-)
G139487 NA other downstream 1707207 6304969 ~ 6374709 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 577895 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 1604026 9697155 ~ 9714037 (-)
G140342 NA other upstream 1942274 10035403 ~ 10103457 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other upstream 2217968 10311097 ~ 10345498 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other upstream 2417960 10511089 ~ 10514807 (-)

Expression


Co-expression Network