LOC103046777


Basic Information

Item Value
gene id LOC103046777
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1241235 ~ 1245769 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229176.3
AACAGTGCTGGCTCCGTTCTTGGCACCATCACTGGGCCAACTGCCCTGGAGAGGGCTGGTGCAACATCTCAccaaatttttgacccaaaaaccaATCACGAATCACCCCTACCCTACCAAATTCCGCGTTTCGCTTACACAATTATTAACATTTACAACAGCGACACAATGCTCATACAAAGAAGGacaaatgttgtgtttttaaattgaaatttaAACGTGTTTACCTAtaattttcttcctctctctctctctgtgaactCATATCACCTTTCTTACCACCAAAATCTACATAATCTGAAGCGTTCACACTCGCACATAAACTCCAGCATGTTGTGAACTGAACCGATACAATAGTATAAATGTAAACACgcttgtttttatgtttttttttgaacgcacattttttattaacgCGTTGTTTCGGTTCCTTTAAGAAAATACAAGGCTGCTCTCGAATCAGGCCGACGTCACGAACTCCCTCGCGGCCTATTGGTGGAAGGCACGTGTCTATGGATACTGGAGTGAAACGTCACGCGAGTGGGAGGAGCCTCGTagcggggggaaaaaaaagggaaaagagagagagagagaaaaaaaagagaaaagcccccaaaataaataaataaatggggaGTGAAAGTATTTGAGGAGCAGTTTGGAtccccctcctcttcctcctcggtGTGGTGGGGCACTGAAGCGCTGCCTCTTTTTCGCCTTATGCATGAACACTAATTCTAACCGATTCTGCAACAATTCTAAACGGATTTGTACCAAAATTAAATATAGAtatctttttacttttaattttttttgcgtTCGCCTAAtatataaaagttgttttttatttttggaggaTAAGCTATGCTGCCTTGTGGCCGGGACCTGCGCGGGCTGCGATTCGTTTTTAAAATCTGCTGACTGAACTGCAAAATTCTGCAAATTTTCTTCAAAATTTTGGGTGGAAAGTAAAGCAAAAGTGGCCGGAGGCGCCGGAGCTGAGGGAGTGAGCGGTCAAGGGTTAAAGGAGGGCAGCAGGGTGGAGAGTGTCTCAGCATGGAGGAGGGTGAGCAGAGTGCGCCTAGAGATGAACCCAACCGGCCCACCGATCGGTCCACCGACCGGTCCACCATCCGCCCGGTCCAGGGTAACCCTCCGCCGCTCCCTCACCGCATCACCAACTTCTTCATAGACAACATCCTCCACCCGGACTTCGGCAGGAAGAAGGAGGCGAGCGCTCTCCGGGCGGACAGCTGCCCGACCGGGGCGGGCGACGCCGCTGGAAGCCCCGCGACACCCGGTTCGGGTCGGTTGAGCGTCAGCGGGCCCACGGAGAGCACTTCCACCCCCCTCCCTGAGAGCGCGGCGAAGAAGCCCGAGATAGAGGAGCCGTTCACCGCCAAGGGGAGCAACAGCAAGGACCAGTGCCTCAGCAGCTCCGAGTCCGATACCTCTCAGCCCGGTACGAACACGTCCCAGAACCGACCCATGCTCTGGCCGGCGTGGGTCTACTGCACGCGCTACTCGGACCGACCATCATCAGGTCCCCGAACCCGCAAACCAAAGAAGAagaacaccaccaccaccaccaccaccaccaccaccaaggAGGACAAGCGACCCCGCACGGCCTTCACAGCCGAGCAGCTCCAGAGACTGAAATCCGAGTTCCAGACCAACCGCTACCTGACCGAGCAGAGGCGGCAAAGCCTGGCTCAGGAGCTCGGCCTCAACGAGTCCCAGATCAAGATCTGGTTCCAGAACAAGAGGGCCAAGATTAAGAAAGCTTCAGGGACCAAGAACACGCTGGCCTTGCATCTGATGGCCCAGGGACTCTACAACCACGCCACCACCACCAAGGAAGACAAGTCTGATAGCGATTGAAATGATAGTAATGGTGAAAatggtgatgataatgatggtggTGGGGATGGATGATCATGATGGTTGGTAGTGGTCCTCAAAAATGTTCAATGCAATAAAAACACTAAGGGCCAGTGGACGAAATACCAGCAAAGCTGaaaattttcataaaaaaacaaaacaaccaaacaaaaataaaaaaataaaataaaaaaaacacaactaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K09319 EN; homeobox protein engrailed

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229176.3 True 2100 mRNA 0.50 2 1241235 1245769

Neighbor

gene id symbol gene type direction distance location
insig1 LOC108412812 coding upstream 17406 1217510 ~ 1223829 (+)
htr5a htr5a,htr5ab,LOC103024346,LOC108412811,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 coding upstream 74816 1128077 ~ 1166419 (+)
LOC103047078 NA coding upstream 151724 1084808 ~ 1089511 (+)
LOC103047582 apol1,LOC107103896 coding upstream 158914 1070007 ~ 1082321 (+)
plk3 plk3,LOC107722069,LOC107563563,LOC107658359,LOC107726922 coding upstream 183710 1046267 ~ 1057525 (+)
rbm33 rbm33 coding downstream 54816 1300585 ~ 1335193 (+)
rnf32 NA coding downstream 191171 1436940 ~ 1449027 (+)
LOC111194186 NA coding downstream 243536 1489305 ~ 1491340 (+)
cdc73 cdc73 coding downstream 319161 1564930 ~ 1594076 (+)
LOC111194189 NA coding downstream 381186 1626955 ~ 1638255 (+)
G137782 NA non-coding upstream 14718 1101388 ~ 1226517 (+)
G137754 NA non-coding upstream 229240 906454 ~ 1011995 (+)
LOC103021626 NA non-coding upstream 255081 980933 ~ 986154 (+)
G137737 NA non-coding upstream 490825 749841 ~ 750410 (+)
G137729 NA non-coding upstream 586786 654221 ~ 654449 (+)
G137839 NA non-coding downstream 105505 1351274 ~ 1455746 (+)
G137850 NA non-coding downstream 194494 1440263 ~ 1440805 (+)
G137856 NA non-coding downstream 262496 1508265 ~ 1509554 (+)
G137857 NA non-coding downstream 263884 1509653 ~ 1512939 (+)
G137858 dcaf8 non-coding downstream 270710 1516479 ~ 1517928 (+)
mrps14 mrps14 other upstream 201265 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 252597 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 460039 762715 ~ 781196 (+)
G137614 NA other upstream 1146662 93285 ~ 94573 (+)
G137826 LOC108430781,LOC108267757 other downstream 246047 1491816 ~ 1499956 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 589708 1835477 ~ 1851313 (+)
G137929 NA other downstream 776986 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1654706 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1836287 3082056 ~ 3084865 (+)

Expression


Co-expression Network