htr5a (htr5a,htr5ab,LOC103024346,LOC108412811,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724)


Basic Information

Item Value
gene id htr5a
gene name htr5a,htr5ab,LOC103024346,LOC108412811,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1128077 ~ 1166419 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229188.3
GAGCTGCATCCACTCAGCACGGAGCTCCAGTAGTGATTGATAGTGATGGTGAACACTGGGGGGGATGGAGCCCCCTGAAACCTTCAGGACATGTCTGCGAGTGAACTTCACCAAAAATATCTGGAGGCTACAATCTCCTGACTCCCAGAGCAGTGCAGAGTGCCCCGGCGTAATGTGATTGCTCTTTTTAATGGTGGAGCCGTAAATCTCTGTAGAACAGCCTAAAAAACAGCATAGGGACTGTTTTTCAGAGTTGAGGAAAACTCTACAATCTTTAAACATGGCCATGTTTGAGCTAAAGAAAGAAagctgaactcttaaaacatcttTACACAACTTTCTAACAATCATGGCAGGCTGTTTTTATCTAGAAACTTCCTATTCTCAGCATGTTCCTCACTAACCAGAAAGTCCTAAGACTCCAACTGGCAGCTTAATCCATCTGGTTGCTTGATCGCTGGTTCTGACCTCGCCACAAGGAATAAAAGCACCGTTGCAATAGTCCCGTGAATACCAGCAATGCCCCATCTCAACGTTACGACGTTACACTCCTCGAACTTTACCAACATCCCAGAATCGGGCAATCTGTACCGTCCGTTTTCTGTCTTCAGCGTCCTCACCCTCACCCTCCTCGCCATGCTCGTCGTGGCCACATTCGTCTGGAACCTCCTGGTCCTGGTGACCATCCTGAGGGTGCGAACCTTTCACCGCGTTCCTCACAACCTGGTGGCCTCCATGGCCATCTCCGACGTGATGGTGGCGGGTCTGGTGATGCCGCTGAGTCTGGTGCGGGAGCTGTACGGTCGGCGCTGGATCCTGGGCCGAATCCTCTGCCAGGTGTGGATCTCCTGTGACGTGCTCTGCTGCACGGCCAGCATTTGGAACGTGACGGCCATAGCCCTGGACCGCTACTGGTCCATCACGCGGCATCTGGAGTACACGCTCAAGACCCGGAAGAGGATCTCCAACGTGATGATCGGACTAACGTGGCTCCTCTCCTCGGTTATCTCCCTCTCGCCGCTCTTCGGCTGGGGAGAGACGTATTCCGAGGAGTCGCTGGCCTGTCAGGTCAGCCAGGAACCTTCGTACACAGTCTTCTCGACTTTTGGGGCTTTCTACCTGCCTCTGTGTGTGGTGCTGTTTGTTTACTGGAAGATCTACAAGGCGGCCAAGTTTCGCATCGGATCCAGAAAGACCAACACCATCATGCCCATGGCTGAGGTCATTGAGGTGAAGGAGGCCAGCCAGCAGCCTCAGATGGCCTTCACGGTGCGGCACACGGCCGTCTCCTTCCAGACGGAGGGCGAGACGTGGCGGGAGCAGAAGGAGCGGCGGGCGGCGCTGATGGTGGGCATTCTGATCGGGGTCTTCGTCCTCTGCTGGATCCCGTTCTTCCTGGCCGAACTCATCACCCCGCTGTGCTCCTGCGACATCCCTCCGGCCTGGAAGAGCGTCTTCCTGTGGCTGGGCTACTCCAACTCCTTCTTCAACCCGCTCATCTACACCGCCTTCAATAAGAACTACAACAGCGCCTTCAGAAACCTCTTCTCCAGGCAGCGCTGACTGAACACGGCTGTGTGAACtacagtatttactgtatgaTCCATAcagtcattctgacagactgtaatgcactacaggaagtgtagggggtgctct

Function

symbol description
htr5ab Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Orthologous to human HTR5A (5-hydroxytryptamine receptor 5A).
htr5a Enables G protein-coupled serotonin receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within adenylate cyclase-activating G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be active in dendrite. Predicted to be integral component of postsynaptic specialization membrane.

NR:

description
5-hydroxytryptamine receptor 5A

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG:

id description
K04161 HTR5; 5-hydroxytryptamine receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229188.3 True 1659 mRNA 0.54 3 1128077 1166419

Neighbor

gene id symbol gene type direction distance location
LOC103047078 NA coding upstream 38566 1084808 ~ 1089511 (+)
LOC103047582 apol1,LOC107103896 coding upstream 45756 1070007 ~ 1082321 (+)
plk3 plk3,LOC107722069,LOC107563563,LOC107658359,LOC107726922 coding upstream 70552 1046267 ~ 1057525 (+)
cacybp NA coding upstream 83360 1040890 ~ 1044717 (+)
kiaa0040 kiaa0040 coding upstream 140371 986421 ~ 987706 (+)
insig1 LOC108412812 coding downstream 51091 1217510 ~ 1223829 (+)
LOC103046777 NA coding downstream 74816 1241235 ~ 1245769 (+)
rbm33 rbm33 coding downstream 134166 1300585 ~ 1335193 (+)
rnf32 NA coding downstream 270521 1436940 ~ 1449027 (+)
LOC111194186 NA coding downstream 322886 1489305 ~ 1491340 (+)
G137754 NA non-coding upstream 116082 906454 ~ 1011995 (+)
LOC103021626 NA non-coding upstream 141923 980933 ~ 986154 (+)
G137737 NA non-coding upstream 377667 749841 ~ 750410 (+)
G137729 NA non-coding upstream 473628 654221 ~ 654449 (+)
G137725 NA non-coding upstream 601010 526248 ~ 527067 (+)
G137839 NA non-coding downstream 184855 1351274 ~ 1455746 (+)
G137850 NA non-coding downstream 273844 1440263 ~ 1440805 (+)
G137856 NA non-coding downstream 341846 1508265 ~ 1509554 (+)
G137857 NA non-coding downstream 343234 1509653 ~ 1512939 (+)
G137858 dcaf8 non-coding downstream 350060 1516479 ~ 1517928 (+)
mrps14 mrps14 other upstream 88107 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 139439 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 346881 762715 ~ 781196 (+)
G137614 NA other upstream 1033504 93285 ~ 94573 (+)
G137826 LOC108430781,LOC108267757 other downstream 325397 1491816 ~ 1499956 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 669058 1835477 ~ 1851313 (+)
G137929 NA other downstream 856336 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1734056 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1915637 3082056 ~ 3084865 (+)

Expression


Co-expression Network