LOC103034049 (LOC108430294,LOC103359748,LOC104917724,LOC100692768)


Basic Information

Item Value
gene id LOC103034049
gene name LOC108430294,LOC103359748,LOC104917724,LOC100692768
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5599753 ~ 5612130 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229299.3
tggtgtgtgtgtgtgtaatagacaGCTGAAGCCCGGCTGAGTCTCAGTGTGTTCCCGCAGTTCTCGGTTTAGTGTCTCGGGTCCCGGTTCGGTTCGGTTGGGGTGTGTGGGGTAATAATGGCTGTGGTGTTGGGTTGTGTGGTTGTACTGGTGCTGCTGGGGCTCCGCGGCTCCTCTCCCTCACCGTTCCCGGGCTCCGGACCGGAGGAGACCTGCGAGGCGAACGGCTCGGTGTACTATGTGGGTGAATGGTACTTCGCGGACTCCGAACACTGTATCCAGTGCGAGTGCACGGCGCGCGGCCCCGCGTGCGCGCGTACTGAGTGCCCGGCTCTGCCCGCCGCCTGCATCCACGTGAGCCACTACCCCAGCGACTGCTGCCCGCGCTGCGAGCGGATCGGCTGCGAGTACCGGGGAGAAGTTTACGACCTGGACCAGAACTTTCAGcCTTCAGAATGTGAGCAGTGTACCTGTGACAGTGATGGCATTGCCAGGTGTCTGGTAGCAGACTGCGCTCCTCCACCCTGTGTTAACCCCGTCTATCAGCCAGGGAAGTGCTGCCCAGACTGCACAGACGGTCCTAACTGTTATGCGGATGCCTCTCGGACGCGGGTGATTCCTGGGGGAGAGCCGGTGTGGGTGGATTCCTGCACTAAGTGCCGATGTCACGACGGGCAGGACGCAGGATACTGGGAGGGCAACCGCCTCGCCACCTGCACCCGCCTCCGCAACTGCACACACACCGACGGGCACAACTGACCCGCACGCGTCCTATCAGCACATAGCACCAGACCAGCACTCCTAATGAAACGCAGCACAGAGATTAGCACAGGATAATGCTGACTCGGCCTGACTCGAGTTAAGAGATAGGcctaaaaaatagtaattaacaATTAATTTCATCCTCTTTAACCCACCTGTACtcaatcagccaagacatgtttgctgtctgatgtatgtttatttagtttggcagtggagctacgaggctaatgtaaCTAATTGTAACTCCTTCtaccccgcccctaaacccatacatcaccccgTGCCCCTCCCAAAACTCTCCTTCCattcttttttgcatttattttttaatttgagctgatctgtaaaatactgtatctgggCAGGGGCTTTAAGTGGTAAGATGTTTTGGCATCAGCTCCCGGAGTCTGAGACACCCAGCAAACATTTGGCATGCtaaatatctgacccagtcagcAACTGAGAGTCAAGCGTTCCAGCAacctacagccaatgggatcacgaagaaagagagaaccacaGGTCATATGACTGTTACACTCGCAAGTgacttttaaatattaaaaataaataatgaattgttTTGAGTAttcctttaattaaaaaaaaaatgtagaataatgtattttacaaaaaagcTAAGAAAACCATTTTCAACAGTAAACAGGGGTTACACTGTAAA

Function

NR:

description
PREDICTED: von Willebrand factor C domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229299.3 True 1447 mRNA 0.52 3 5599753 5612130

Neighbor

gene id symbol gene type direction distance location
slc6a9 slc6a9,LOC107700995,LOC107730788,LOC107739827,LOC107557089 coding upstream 36960 5460484 ~ 5562793 (+)
klf17 LOC103372686,LOC107599908,LOC107657420,LOC107739832 coding upstream 164709 5432274 ~ 5435044 (+)
rnf220 rnf220,rnf220a coding upstream 323278 5129802 ~ 5276475 (+)
LOC103028041 otomp,LOC108428860,LOC107678687,LOC108267868,LOC107602611,LOC107690301 coding upstream 542057 5048152 ~ 5057696 (+)
d2hgdh d2hgdh,LOC107749221,LOC107678686 coding upstream 573465 5017934 ~ 5026288 (+)
atp6v0b atp6v0b,LOC102788333 coding downstream 305436 5917566 ~ 5927862 (+)
LOC111194288 NA coding downstream 331993 5944123 ~ 5945693 (+)
LOC111194287 NA coding downstream 340836 5952966 ~ 5953691 (+)
LOC111194285 NA coding downstream 352104 5964234 ~ 5966104 (+)
LOC103047673 NA coding downstream 389856 6001986 ~ 6003912 (+)
G139139 NA non-coding upstream 156788 5442556 ~ 5442965 (+)
LOC111194278 NA non-coding upstream 189639 5407208 ~ 5410114 (+)
G139117 NA non-coding upstream 247028 5352155 ~ 5352725 (+)
G139115 NA non-coding upstream 248074 5351443 ~ 5351679 (+)
G139097 NA non-coding upstream 280923 5318567 ~ 5318830 (+)
G139170 NA non-coding downstream 2164 5614294 ~ 5615889 (+)
G139219 NA non-coding downstream 373286 5985416 ~ 5986073 (+)
LOC111194227 NA non-coding downstream 496533 6108663 ~ 6109216 (+)
G139259 NA non-coding downstream 498440 6110570 ~ 6110988 (+)
LOC111194228 NA non-coding downstream 514134 6126264 ~ 6129711 (+)
G139154 NA other upstream 143749 5455480 ~ 5456004 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other upstream 592747 4889873 ~ 5007006 (+)
LOC103026815 LOC108428843 other upstream 876979 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other upstream 891090 4703346 ~ 4708663 (+)
G138839 NA other upstream 1353889 4237609 ~ 4245864 (+)
LOC107197321 NA other downstream 447287 6059417 ~ 6060050 (+)
LOC103021569 NA other downstream 533833 6145963 ~ 6155929 (+)
G139268 NA other downstream 547590 6159720 ~ 6164164 (+)
LOC103028159 NA other downstream 623304 6235434 ~ 6242571 (+)
G139282 NA other downstream 654686 6266816 ~ 6267387 (+)

Expression


Co-expression Network