LOC103039200 (zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800)


Basic Information

Item Value
gene id LOC103039200
gene name zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9782729 ~ 9794211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229318.2
GCAGCCCTCCACCTTCCTGCATTCTCCAGTCTGCTCTCGCTCTGCTCTCAGCCAGGATCCTCAGCTGTCCATCATGTCCATGTCTATGTCCTTGTCCTCCTCCAGGCTCTCCGGCTACTCGGGCGGCGGCTTCTCCCGGGGTGCCGGTGGTGCTGGAGCCAGGCTAGGTCTGGGGCTTGGTGGAGGTGCTGGAGCAGGTCTGGGGCTTGGCCTAGGCTTGGGTGGAGGTGCTGGTGCTGGTTTTGGCTATGGCTTGGGTGGTGGTGcaggtgctggtgctggttTTGGCTATGGTTCGGGtggtggtgctggagcaggATTTGGCTTTGGAGCCGGCGGAGCTGGAGGAGCGCTAGTCGCTAGTCCGGCCTTCGCCATGGGCCGCACCATCGCCGCAGGAGGGCTGAGTGCAGGCTCTGCTTTGGCAGCTGGCCCTGCTCTGGGTGTCTCCGTGGCTCCCATCCTGTCCCGAGAGGCCGAGAAGAGCACGCTGTCCAATCTGAACGACCGCTTCTCCACCTACATGGCCAAAGTGCGAGCACTGCAGCAGGAGAACGCTGCTCTGGAGGCCAAGTTGTCCCAGCTGACCGGAGGTGCCGACATGTCTCCCGAGGCATCCAGCACCACCACGGTGGAGTACGAGGCCCAGCTGAGCGAGTACCGCAGCACCCTGCAGACCCTCACCCTCGACACCATCAAACTGGAGATCGAGCTTGACAACGTCCGTGGTGCTGCTCACGAGGTCAAGGCCAAGCTTGACTTTGAGCAAGGGGTCAAGTTTCAGCTGGAGTCGGACATTGCTTCTATGAAAAAGGATATTGAAGCAGCATCTGACCTAAGAATCGATCTGGATGCAAAATACGCCAGCCTGAAGAGTGAACTGGACTTTGTCACCAAAACACAGGAAGAGGAGCTGTCCAGTCTGCAGTCCAAACTAGGCACGAGCACTATGGACACGTCCGTCTCCATGATTGAAGTCGACACTGGGAAGTCGTTCGACATCTCTGCAGCTCTCAACAAGATGCGTATGGAGTACGAGAAGTCTGTGCAGCAGAATCGAGAGGAGGCTGAGGCGTACTATAAGATCAAGATGGATGAAATCCAGACGGCTAACGCTAAGAGCACAGAGGCCGTGTCAGTTGTCAAAACTGAGGTCACCTCTGCCAGGAAAGAGCTGCAGGCGCTGGGCATAGAGCTCCAGGGGCTTATCACGCAAAACGTGACCCTGGAGCAAAGCCTGGCTGAGGCCAGTGCCCAGTCCAGCGTGGGGGTGGCTGAGTACCAGGCCCAGATAGCTAGCCTAACGTCAGCCATCGAGGCGGCTAAAGTGGACCTTCAGAAACAGATGCTGGCCTACCAGGAGCTGCTGGATGTCAAACTGGCCCTCGACGTGGAAATCTCCACCTACAGGAAACTGCTGGAGGGAGATGACTTCAAGATGCCAGACTACACCGAAACATCCTACACTTTCTCAGCTGGTGGAAAAATACAAGTTAAGGAGATCATCACAGAGCACACAGAGACATCAGTCATCAGCGATGATGGAGAGTCCTCCTGAATACAGAGTGACTGTCTGTGATGACCTGAAGCCAACAGTCTCCTTTCCTGCTCTTCCAATAAATCTGCATTCCAATAAA
>XM_015604331.2
GCAGCCCTCCACCTTCCTGCATTCTCCAGTCTGCTCTCGCTCTGCTCTCAGCCAGGATCCTCAGCTGTCCATCATGTCCATGTCTATGTCCTTGTCCTCCTCCAGGCTCTCCGGCTACTCGGGCGGCGGCTTCTCCCGGGGTGCCGGTGGTGCTGGAGCCAGGCTAGGTCTGGGGCTTGGTGGAGGTGCTGGAGCAGGTCTGGGGCTTGGCCTAGGCTTGGGTGGAGGTGCTGGTGCTGGTTTTGGCTATGGCTTGGGTGGTGGTGcaggtgctggtgctggttTTGGCTATGGTTCGGGtggtggtgctggagcaggATTTGGCTTTGGAGCCGGCGGAGCTGGAGGAGCGCTAGTCGCTAGTCCGGCCTTCGCCATGGGCCGCACCATCGCCGCAGGAGGGCTGAGTGCAGGCTCTGCTTTGGCAGCTGGCCCTGCTCTGGGTGTCTCCGTGGCTCCCATCCTGTCCCGAGAGGCCGAGAAGAGCACGCTGTCCAATCTGAACGACCGCTTCTCCACCTACATGGCCAAAGTGCGAGCACTGCAGCAGGAGAACGCTGCTCTGGAGGCCAAGTTGTCCCAGCTGACCGGAGGTGCCGACATGTCTCCCGAGGCATCCAGCACCACCACGGTGGAGTACGAGGCCCAGCTGAGCGAGTACCGCAGCACCCTGCAGACCCTCACCCTCGACACCATCAAACTGGAGATCGAGCTTGACAACGTCCGTGGTGCTGCTCACGAGGTCAAGGCCAAGCTTGACTTTGAGCAAGGGGTCAAGTTTCAGCTGGAGTCGGACATTGCTTCTATGAAAAAGGATATTGAAGCAGCATCTGACCTAAGAATCGATCTGGATGCAAAATACGCCAGCCTGAAGAGTGAACTGGACTTTGTCACCAAAACACAGGAAGAGGAGCTGTCCAGTCTGCAGTCCAAACTAGGCACGAGCACTATGGACACGTCCGTCTCCATGATTGAAGTCGACACTGGGAAGTCGTTCGACATCTCTGCAGCTCTCAACAAGATGCGTATGGAGTACGAGAAGTCTGTGCAGCAGAATCGAGAGGAGGCTGAGGCGTACTATAAGATCAAGATGGATGAAATCCAGACGGCTAACGCTAAGAGCACAGAGGCCGTGTCAGTTGTCAAAACTGAGGTCACCTCTGCCAGGAAAGAGCTGCAGGCGCTGGGCATAGAGCTCCAGGGGCTTATCACGCAAAACGTGACCCTGGAGCAAAGCCTGGCTGAGGCCAGTGCCCAGTCCAGCGTGGGGGTGGCTGAGTACCAGGCCCAGATAGCTAGCCTAACGTCAGCCATCGAGGCGGCTAAAGTGGACCTTCAGAAACAGATGCTGGCCTACCAGGAGCTGCTGGATGTCAAACTGGCCCTCGACGTGGAAATCTCCACCTACAGGAAACTGCTGGAGGGAGATGACTTCAAGATGCCAGACTACACCGAAACATCCTACACTTTCTCAGGGGGAAACCCACCCCAAACCAGCACCCCCCAGGACTCCCCCCACGGCCAGGTGGAAATACACACTAAATACGTCCACACAGCTGGTGGAAAAATACAAGTTAAGGAGATCATCACAGAGCACACAGAGACATCAGTCATCAGCGATGATGGAGAGTCCTCCTGAATACAGAGTGACTGTCTGTGATGACCTGAAGCCAACAGTCTCCTTTCCTGCTCTTCCAATAAATCTGCATTCCAATAAA

Function

symbol description
zgc:136930 Predicted to be located in intermediate filament.

NR:

description
PREDICTED: thread biopolymer filament subunit gamma-like isoform X1

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229318.2 False 1637 mRNA 0.57 9 9782729 9794211
XM_015604331.2 True 1718 mRNA 0.57 10 9782729 9794211

Neighbor

gene id symbol gene type direction distance location
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding upstream 41737 9713563 ~ 9740992 (+)
LOC103039571 tmub1,LOC102788489 coding upstream 335596 9440692 ~ 9447133 (+)
LOC111194194 NA coding upstream 656909 9119168 ~ 9125820 (+)
LOC103021839 NA coding upstream 757715 9023097 ~ 9025014 (+)
LOC111194298 NA coding upstream 1208818 8571833 ~ 8573911 (+)
LOC103038676 NA coding downstream 16371 9810582 ~ 9812214 (+)
fam217a NA coding downstream 35691 9829902 ~ 9847321 (+)
LOC103040953 si:dkey-154p10.3,LOC108430290,LOC107736657,LOC108267397,LOC107730804,LOC107701000 coding downstream 67801 9862012 ~ 9876520 (+)
LOC103040652 NA coding downstream 85955 9880166 ~ 9884126 (+)
LOC103036973 LOC108430268 coding downstream 89998 9884209 ~ 9888577 (+)
G140169 NA non-coding upstream 33631 9748696 ~ 9749098 (+)
G140074 nrbp2,LOC108267406,LOC108413492,LOC106597174 non-coding upstream 173568 9597473 ~ 9609161 (+)
G140072 NA non-coding upstream 190926 9590347 ~ 9591803 (+)
G140057 LOC108413493,LOC108267407,LOC107599879 non-coding upstream 219105 9532829 ~ 9563624 (+)
G140060 NA non-coding upstream 243421 9538378 ~ 9539308 (+)
G140245 NA non-coding downstream 115420 9909631 ~ 9910544 (+)
G140249 NA non-coding downstream 130922 9925133 ~ 9926043 (+)
G140251 NA non-coding downstream 132098 9926309 ~ 9926576 (+)
G140255 NA non-coding downstream 146817 9941028 ~ 9942279 (+)
G140274 NA non-coding downstream 303957 10098168 ~ 10156048 (+)
G140103 NA other upstream 37374 9743698 ~ 9745355 (+)
G140062 NA other upstream 241919 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 558748 9220274 ~ 9223981 (+)
LOC103030954 NA other upstream 620206 9161333 ~ 9162523 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 2736431 7041560 ~ 7046298 (+)
G140258 NA other downstream 195707 9989918 ~ 9990296 (+)
G140262 NA other downstream 199375 9993586 ~ 9994066 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 516889 10311100 ~ 10345471 (+)
G140402 NA other downstream 601309 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 633055 10427266 ~ 10444540 (+)

Expression


Co-expression Network