LOC103040953 (si:dkey-154p10.3,LOC108430290,LOC107736657,LOC108267397,LOC107730804,LOC107701000)


Basic Information

Item Value
gene id LOC103040953
gene name si:dkey-154p10.3,LOC108430290,LOC107736657,LOC108267397,LOC107730804,LOC107701000
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9862012 ~ 9876520 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229322.3
TCCTGATGCCTTCAACTCAGGCTCAGatggttgtttttatttatttaacctcGTACCTAATGTAGCTAATGTGAATACTAAGAAGCATTAGACAAAGTCATAGTTTTCTTTATGTTGAACTCCACAGAACAGCTAGTTTAGCTGAATGCCGAATGAGTGGATATGAAGAATCTGTGATGGAGAACttttagctgggttagctaactATATTTTAAGTCCAAATTATGGGAGGGATTAGAGATGCTTACCAGGACATCCAACCTGTGACTCTGCGACTTGCGGAGGACAGCATCACGTCACACCtttactgcagctcagccaatagTATCGAAGCTCACCTGTCCACCTTGGTTGAGGCCTTTTTAGTTGAAGTGTTCCGGTGCCGAGTATGCCAGTTCACCAGCAGTCAGAAAGCCAGGATCAGCAGACATGTGTCTGAGAGACATTCGCCACAACCGTGCCCCCATATCTCGTGCCTGGAAAAAGAGGATGAGGAGAGCTTGACTGTGGGCATGAGGATGGATGAAGAACTGGAACAAAGCGGCTCTCCTTACGACCTCCATTCTGACTCAAATAACAGTGAGGACCAGATGGACATGGAACGCATGTCTTTTCTGCTCCCCATGTACAGTATGCTGCAGAACATTAGCCCACCATGCGACATGGGCCTGAGCTCCAACTCTGATGGAAACCCGCATGTGGCGCAAACGTGTGAGGTGAGCACTCTGTTTGAGGAGGACCAGCATGGGCAAAACAGCGAGGAGGAAGCTGTGTTCCAGCTGGAGGACACCAGAGATGGCATGCCTGGACCCCTTTCGAATAGGATGGGCTGCACAGAAGACCAGGATGAAGAGATGGCCCAGTCAGCTCATTTAATGACACTGGGACTGTGCAGAATCTCCAGCACTAAGTGCCCCTCTCAGCCTGCTCCTCTAGTCAGCAGGATGGCTCTGACCACTGGAGGGCAGGATGTGTCTAATTCctttgtggaggacaaacagcCCCTGCTAACCATGGGGGAAATGCAGAAGCCGGCCGAGGAGGATAGAGGATTTTCCTGCATCCTCTGCCAGGCAAACATGGCCAGCAATAGCCTGCTGGATGTGCACCTGAAGTGCCATGATGGAGAGCAGGGCTTTAAGTGTCCACGCTGCAGTTGGGCCACCATGGAATGGGGGAATATGGAGCGCCACTGGAAGGGCCATGGGAGTAAGAGGAGTTCCAGACCTCACAAGTGTGCCCTCTGCCCCAAAGCGTTCAGAAGAGTGGACTCCCGAGACGCTCATGAAAAGAGGCATAACCGGCGTCATCGAATGCGGCCGAAGTGTTCTCCTGTGGCGCAGTGCCCTCTGTGCCTTGAGTGGTgccaatcagagagagagtgggagataCATCAGCGCTGCCACTCTCAGGGTGGCTTTAAGTGCTTCTACTGTGATGTCACAGAAAAGTCATGCAAGAAGATCCACAAGCACATCTTTAatcaacacacagagaacaaTGCGGATCCAGACCAACAGGCTCCCTGCTATGATGGACTCCTCAAGCTTAACAGTGAATCACCAAGCAGTAACCCAAAATGCTTCAGAGGAGTGCAGCCGGAGTCATGGAgccagaaagaaaaaacaaaacacagagttgagggaaaaaagaaggagttggagaagaAAGATGGTGCGAGACACTCTGAGATAAGGGAGGGATAGAGTCAAAGGACCTAAGAGAAAAGAGTTCTGCTGTACTCTCTGTGATCGTAAGTTTTCTAGTAAACTGACTATGCGTCGACACATGGGGATCCACCAGGGGGATAAGCCGTTTGAGTGTCCCCACTGCCACTACTCCACAAGACTAAAGGCCTCACTCATCCAGCACCTGCGTGTTCATACAGGAGAGAAGCCGTACAAGTGTCCCCAGTGTTCCTACGCCTCCATAGACCGGAGCTCTCTGCGCCGACACCTCCGCACACACACGCAAGAAAAGCCCTACCACTGCCAGTACTGCCCCTACAgctgCATCCAGAAGAAAAGCCTGGACCTTCACTCTCGAAGACATCACACAGGAGAGTCGTTCCCCTGCCCCCTGTGCCAGTACTCTACACCAGACCGCCAGCTGCTGTTAcgacacacacataaacaccacAGTACCGAACAGTCTAGCACGCTGGGGTCAAGAACTCGACAACAGTCTATTACTCACAAAAGTTCCTCAAAAAGGCCACGCCCCTCTACATGACACTGAACACatgaaatttatatattttataatggacttttagtattgtttttagacttctattatactattaatgttgaataaaatgtataatgtgtTCATTATCTGTGGCAttgtctgaaattaaattttgaAGTGGAA
>XM_022677970.1
TCCTGATGCCTTCAACTCAGGCTCAGatggttgtttttatttatttaacctcGTACCTAATGTAGCTAATGTGAATACTAAGAAGCATTAGACAAAGTCATAGTTTTCTTTATGTTGAACTCCACAGAACAGCTAGTTTAGCTGAATGCCGAATGAGTGGATATGAAGAATCTGTGATGGAGAACttttagctgggttagctaactATATTTTAAGTCCAAATTATGGGAGGGATTAGAGATGCTTACCAGGACATCCAACCTGTGACTCTGCGACTTGCGGAGGACAGCATCACGTCACACCtttactgcagctcagccaatagTATCGAAGCTCACCTGTCCACCTTGGTTGAGGCCTTTTTAGTTGAAGTGTTCCGGTGCCGAGTATGCCAGTTCACCAGCAGTCAGAAAGCCAGGATCAGCAGACATGTGTCTGAGAGACATTCGCCACAACCGTGCCCCCATATCTCGTGCCTGGAAAAAGAGGATGAGGAGAGCTTGACTGTGGGCATGAGGATGGATGAAGAACTGGAACAAAGCGGCTCTCCTTACGACCTCCATTCTGACTCAAATAACAGTGAGGACCAGATGGACATGGAACGCATGTCTTTTCTGCTCCCCATGTACAGTATGCTGCAGAACATTAGCCCACCATGCGACATGGGCCTGAGCTCCAACTCTGATGGAAACCCGCATGTGGCGCAAACGTGTGAGGTGAGCACTCTGTTTGAGGAGGACCAGCATGGGCAAAACAGCGAGGAGGAAGCTGTGTTCCAGCTGGAGGACACCAGAGATGGCATGCCTGGACCCCTTTCGAATAGGATGGGCTGCACAGAAGACCAGGATGAAGAGATGGCCCAGTCAGCTCATTTAATGACACTGGGACTGTGCAGAATCTCCAGCACTAAGTGCCCCTCTCAGCCTGCTCCTCTAGTCAGCAGGATGGCTCTGACCACTGGAGGGCAGGATGTGTCTAATTCctttgtggaggacaaacagcCCCTGCTAACCATGGGGGAAATGCAGAAGCCGGCCGAGGAGGATAGAGGATTTTCCTGCATCCTCTGCCAGGCAAACATGGCCAGCAATAGCCTGCTGGATGTGCACCTGAAGTGCCATGATGGAGAGCAGGGCTTTAAGTGTCCACGCTGCAGTTGGGCCACCATGGAATGGGGGAATATGGAGCGCCACTGGAAGGGCCATGGGAGTAAGAGGAGTTCCAGACCTCACAAGTGTGCCCTCTGCCCCAAAGCGTTCAGAAGAGTGGACTCCCGAGACGCTCATGAAAAGAGGCATAACCGGCGTCATCGAATGCGGCCGAAGTGTTCTCCTGTGGCGCAGTGCCCTCTGTGCCTTGAGTGGTgccaatcagagagagagtgggagataCATCAGCGCTGCCACTCTCAGGGTGGCTTTAAGTGCTTCTACTGTGATGTCACAGAAAAGTCATGCAAGAAGATCCACAAGCACATCTTTAatcaacacacagagaacaaTGCGGATCCAGACCAACAGGCTCCCTGCTATGATGGACTCCTCAAGCTTAACAGTGAATCACCAAGCAGTAACCCAAAATGCTTCAGAGGAGTGCAGCCGGAGTCATGGAgccagaaagaaaaaacaaaacacagagttgagggaaaaaagaaggagttggagaagaAAGATGGTGCGAGACACTCTGAGATAAGGGAGGGATAGAGTCAAAGGACCTAAGAGAAAAGAGTTCTGCTGTACTCTCTGTGATCGTAAGTTTTCTAGTAAACTGACTATGCGTCGACACATGGGGATCCACCAGGGGGATAAGCCGTTTGAGTGTCCCCACTGCCACTACTCCACAAGACTAAAGGCCTCACTCATCCAGCACCTGCGTGTTCATACAGATCTTCATCTGAAGAGATGCTTTACCCAGAGATTGAAACAGTCTT
>XM_022677971.1
CTGTCCTGATGCCTTCAACTCAGGCTCAGatggttgtttttatttatttaacctcGTACCTAATGTAGCTAATGTGAATACTAAGAAGCATTAGACAAAGTCATAGTTTTCTTTATGTTGAACTCCACAGAACAGCTAGTTTAGCTGAATGCCGAATGAGTGGATATGAAGAATCTGTGATGGAGAACttttagctgggttagctaactATATTTTAAGTCCAAATTATGGGAGGGATTAGAGATGCTTACCAGGACATCCAACCTGTGACTCTGCGACTTGCGGAGGACAGCATCACGTCACACCtttactgcagctcagccaatagTATCGAAGCTCACCTGTCCACCTTGGTTGAGGCCTTTTTAGTTGAAGTGTTCCGGTGCCGAGTATGCCAGTTCACCAGCAGTCAGAAAGCCAGGATCAGCAGACATGTGTCTGAGAGACATTCGCCACAACCGTGCCCCCATATCTCGTGCCTGGAAAAAGAGGATGAGGAGAGCTTGACTGTGGGCATGAGGATGGATGAAGAACTGGAACAAAGCGGCTCTCCTTACGACCTCCATTCTGACTCAAATAACAGTGAGGACCAGATGGACATGGAACGCATGTCTTTTCTGCTCCCCATGTACAGTATGCTGCAGAACATTAGCCCACCATGCGACATGGGCCTGAGCTCCAACTCTGATGGAAACCCGCATGTGGCGCAAACGTGTGAGGTGAGCACTCTGTTTGAGGAGGACCAGCATGGGCAAAACAGCGAGGAGGAAGCTGTGTTCCAGCTGGAGGACACCAGAGATGGCATGCCTGGACCCCTTTCGAATAGGATGGGCTGCACAGAAGACCAGGATGAAGAGATGGCCCAGTCAGCTCATTTAATGACACTGGGACTGTGCAGAATCTCCAGCACTAAGTGCCCCTCTCAGCCTGCTCCTCTAGTCAGCAGGATGGCTCTGACCACTGGAGGGCAGGATGTGTCTAATTCctttgtggaggacaaacagcCCCTGCTAACCATGGGGGAAATGCAGAAGCCGGCCGAGGAGGATAGAGGATTTTCCTGCATCCTCTGCCAGGCAAACATGGCCAGCAATAGCCTGCTGGATGTGCACCTGAAGTGCCATGATGGAGAGCAGGGCTTTAAGTGTCCACGCTGCAGTTGGGCCACCATGGAATGGGGGAATATGGAGCGCCACTGGAAGGGCCATGGGAGTAAGAGGAGTTCCAGACCTCACAAGTGTGCCCTCTGCCCCAAAGCGTTCAGAAGAGTGGACTCCCGAGACGCTCATGAAAAGAGGCATAACCGGCGTCATCGAATGCGGCCGAAGTGTTCTCCTGTGGCGCAGTGCCCTCTGTGCCTTGAGTGGTgccaatcagagagagagtgggagataCATCAGCGCTGCCACTCTCAGGGTGGCTTTAAGTGCTTCTACTGTGATGTCACAGTGGACTCCTCAAGCTTAACAGTGAATCACCAAGCAGTAACCCAAAATGCTTCAGAGGAGTGCAGCCGGAGTCATGGAgccagaaagaaaaaacaaaacacagagttgagggaaaaaagaaggagttggagaagaAAGATGGTGCGAGACACTCTGAGATAAGGGAGGGATAGAGTCAAAGGACCTAAGAGAAAAGAGTTCTGCTGTACTCTCTGTGATCGTAAGTTTTCTAGTAAACTGACTATGCGTCGACACATGGGGATCCACCAGGGGGATAAGCCGTTTGAGTGTCCCCACTGCCACTACTCCACAAGACTAAAGGCCTCACTCATCCAGCACCTGCGTGTTCATACAGGAGAGAAGCCGTACAAGTGTCCCCAGTGTTCCTACGCCTCCATAGACCGGAGCTCTCTGCGCCGACACCTCCGCACACACACGCAAGAAAAGCCCTACCACTGCCAGTACTGCCCCTACAgctgCATCCAGAAGAAAAGCCTGGACCTTCACTCTCGAAGACATCACACAGGAGAGTCGTTCCCCTGCCCCCTGTGCCAGTACTCTACACCAGACCGCCAGCTGCTGTTAcgacacacacataaacaccacAGTACCGAACAGTCTAGCACGCTGGGGTCAAGAACTCGACAACAGTCTATTACTCACAAAAGTTCCTCAAAAAGGCCACGCCCCTCTACATGACACTGAACACatgaaatttatatattttataatggacttttagtattgtttttagacttctattatactattaatgttgaataaaatgtataatgtgtTCATTATCTGTGGCAttgtctgaaattaaattttgaAGTGGAA
>XM_022677972.1
CGCTGTCCTGATGCCTTCAACTCAGGCTCAGatggttgtttttatttatttaacctcGTACCTAATGTAGCTAATGTGAATACTAAGAAGCATTAGACAAAGTCATAGTTTTCTTTATGTTGAACTCCACAGAACAGCTAGTTTAGCTGAATGCCGAATGAGTGGATATGAAGAATCTGTGATGGAGAACttttagctgggttagctaactATATTTTAAGTCCAAATTATGGGAGGGATTAGAGATGCTTACCAGGACATCCAACCTGTGACTCTGCGACTTGCGGAGGACAGCATCACGTCACACCtttactgcagctcagccaatagTATCGAAGCTCACCTGTCCACCTTGGTTGAGGCCTTTTTAGTTGAAGTGTTCCGGTGCCGAGTATGCCAGTTCACCAGCAGTCAGAAAGCCAGGATCAGCAGACATGTGTCTGAGAGACATTCGCCACAACCGTGCCCCCATATCTCGTGCCTGGAAAAAGAGGATGAGGAGAGCTTGACTGTGGGCATGAGGATGGATGAAGAACTGGAACAAAGCGGCTCTCCTTACGACCTCCATTCTGACTCAAATAACAGTGAGGACCAGATGGACATGGAACGCATGTCTTTTCTGCTCCCCATGTACAGTATGCTGCAGAACATTAGCCCACCATGCGACATGGGCCTGAGCTCCAACTCTGATGGAAACCCGCATGTGGCGCAAACGTGTGAGGTGAGCACTCTGTTTGAGGAGGACCAGCATGGGCAAAACAGCGAGGAGGAAGCTGTGTTCCAGCTGGAGGACACCAGAGATGGCATGCCTGGACCCCTTTCGAATAGGATGGGCTGCACAGAAGACCAGGATGAAGAGATGGCCCAGTCAGCTCATTTAATGACACTGGGACTGTGCAGAATCTCCAGCACTAAGTGCCCCTCTCAGCCTGCTCCTCTAGTCAGCAGGATGGCTCTGACCACTGGAGGGCAGGATGTGTCTAATTCctttgtggaggacaaacagcCCCTGCTAACCATGGGGGAAATGCAGAAGCCGGCCGAGGAGGATAGAGGATTTTCCTGCATCCTCTGCCAGGCAAACATGGCCAGCAATAGCCTGCTGGATGTGCACCTGAAGTGCCATGATGGAGAGCAGGGCTTTAAGTGTCCACGCTGCAGTTGGGCCACCATGGAATGGGGGAATATGGAGCGCCACTGGAAGGGCCATGGGAGTAAGAGGAGTTCCAGACCTCACAAGTGTGCCCTCTGCCCCAAAGCGTTCAGAAGAGTGGACTCCCGAGACGCTCATGAAAAGAGGCATAACCGGCGTCATCGAATGCGGCCGAAGTGTTCTCCTGTGGCGCAGTGCCCTCTGTGCCTTGAGTGGTgccaatcagagagagagtgggagataCATCAGCGCTGCCACTCTCAGGGTGGCTTTAAGTGCTTCTACTGTGATGTCACAGgacctggacaacttgtaattgatggaaccagAAATTCTGAACCAGAAAATCGTAAAGGAGAATGTCTGTTTATCAGTTTGTGACCACAAGCTCAGGATCTGAAGCACACCAACAAGTTCACCTCTCAAtggctaaaaaacaaacaaaaaaacaaagtgaacgttttggagtggcctagtaaaagtctgattgagatgctgtggcatgatcttaaacaggctgttcatgttcgaaaaccctccaatgtgtctgttATTAAATTGTGTTTGTTAGTCTGAGAAATTTaaatgggttaaaaaaaagcacaatttttttttacagcactatATGTAATCGGTAATAAGGACTATAAGAAAATTggcaactttttaaaatattgttctggcaatttttacttatttttttattttataggtttatttgcttatttgcaATCCTATACAAAAATACTGAATATCTGGACATTTTTTGTGTAGTGAACCTTCAACAGCGGTGTCTCTTTTAACTGTAGAAAAGTCATGCAAGAAGATCCACAAGCACATCTTTAatcaacacacagagaacaaTGCGGATCCAGACCAACAGGCTCCCTGCTA

Function

symbol description
si:dkey-154p10.3 Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

NR:

description
PREDICTED: zinc finger protein 513-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229322.3 True 2373 mRNA 0.49 9 9862017 9876520
XM_022677970.1 False 1933 mRNA 0.50 8 9862017 9870918
XM_022677971.1 False 2288 mRNA 0.50 8 9862014 9876520
XM_022677972.1 False 2047 mRNA 0.47 5 9862012 9865937

Neighbor

gene id symbol gene type direction distance location
fam217a NA coding upstream 14691 9829902 ~ 9847321 (+)
LOC103038676 NA coding upstream 49798 9810582 ~ 9812214 (+)
LOC103039200 zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800 coding upstream 67801 9782729 ~ 9794211 (+)
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding upstream 121020 9713563 ~ 9740992 (+)
LOC103039571 tmub1,LOC102788489 coding upstream 414879 9440692 ~ 9447133 (+)
LOC103040652 NA coding downstream 3646 9880166 ~ 9884126 (+)
LOC103036973 LOC108430268 coding downstream 7689 9884209 ~ 9888577 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107733878 coding downstream 20556 9897076 ~ 9904114 (+)
LOC103041077 slc1a8b,LOC108444332,LOC107591333,LOC107557414,LOC107706395,LOC107738183,LOC105889468 coding downstream 254375 10130895 ~ 10147727 (+)
pex19 pex19,LOC107591335,LOC107659417,LOC107684402 coding downstream 287290 10163810 ~ 10169697 (+)
G140169 NA non-coding upstream 112914 9748696 ~ 9749098 (+)
G140074 nrbp2,LOC108267406,LOC108413492,LOC106597174 non-coding upstream 252851 9597473 ~ 9609161 (+)
G140072 NA non-coding upstream 270209 9590347 ~ 9591803 (+)
G140057 LOC108413493,LOC108267407,LOC107599879 non-coding upstream 298388 9532829 ~ 9563624 (+)
G140245 NA non-coding downstream 33111 9909631 ~ 9910544 (+)
G140249 NA non-coding downstream 48613 9925133 ~ 9926043 (+)
G140251 NA non-coding downstream 49789 9926309 ~ 9926576 (+)
G140255 NA non-coding downstream 64508 9941028 ~ 9942279 (+)
G140274 NA non-coding downstream 221648 10098168 ~ 10156048 (+)
G140103 NA other upstream 116657 9743698 ~ 9745355 (+)
G140062 NA other upstream 321202 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 638031 9220274 ~ 9223981 (+)
LOC103030954 NA other upstream 699489 9161333 ~ 9162523 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 2815714 7041560 ~ 7046298 (+)
G140258 NA other downstream 113398 9989918 ~ 9990296 (+)
G140262 NA other downstream 117066 9993586 ~ 9994066 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 434580 10311100 ~ 10345471 (+)
G140402 NA other downstream 519000 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 550746 10427266 ~ 10444540 (+)

Expression


Co-expression Network