hacd1 (hacd1,LOC107702201,LOC107571282,LOC107568855,LOC107691470)


Basic Information

Item Value
gene id hacd1
gene name hacd1,LOC107702201,LOC107571282,LOC107568855,LOC107691470
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22854584 ~ 22870140 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230328.3
AATCCCTCCCCGGCGCTACGATTGGTTAAAAGTTCGTCCTCAGACAGAAGTCCGTCTACCACGTGATTCATTTTTCACACCTGTTTAACCGCTAGCCCCGCCCATTCTCTTTACGCAGCCAGTCACAGACAGAGCACTGATAGAGGGGCTACTCTGAATACGGGTGGGAAAGGAATTAGCGGGTCCTGCCAGCTGCCCTGCTGCTCTAGGCTCGGTTTGTCAGCCTGTCGCACTCTTGCCCCCTTCCCCCCCACCCGGTGGTACCATGGCGTCTGGCGAGGAGGACGGAGCGGTGGAGGAGAAAGAAAccaacaacaagaaaaagaggaCAAAAAGCGCTATCGCTATCGCATGGCTCACCGTCTACAACATCGCCATGACGGCCGGGTGGCTGGTGTTGGCTGTTGCAATGATTCGGTTCTATCTCCAGAAAGGCACACACAGGGGCTTGTACAGAAGTATAGCAAGAACACTTAAGTTTTTCCAGACATTTGCTCTGTTGGAGGTCGGGCACTGTGCAATTGGAATTGTTCGGACATCTGTGATCGTGACTGGGGTCCAAGTGTGCTCTCGGATATTTATGGTTTGGTTCATCGCGAGTAGTATCAGACAGGTCCAGAATCAGGAAAGTGTGATCCTGTTTCTGGTGGTGTGGACAGTCACTGAGATCACACGTTACTCCTTCTACACCTTCAATCTGCTTAACCACCTGCCATACTTCATCAAATGGGCCAGataCAACATGTTCATTGTCATGTACCCTTTGGGAGTGATTGGTGAACTGATGACCATATATGCTGCTCTACCTTATGTTCGGAGATCGGGCATGTACTCCTTGAGGCTCCCAAACACGTACAATGTCTCCTTCGACTACTACTACTTCCTCATCATCGTAATGCTCTCCTACATCCCACtATTTCCTCAGCTCTATTTCCACATGCTGCGTCAGAGGAGAAGGGTGCTTCATGGAGAGGTTATAGTGGAGAAAGATGAGTAGAGAAAGACCACACCTGACCACCAGATAGCAATCAACCAGTGCTCAGAAAATCTCCACCCAGCCTTCAGTCCGTGGAGAAGAACGCCAGATAACATCAAACAGACTGTGCCACTCTGTCTGCAGGATCATCACAACCCAAAACtatcatacagaaaaaaaagaaaaaaaaaagaattgcttAAGTACCCATGCATAGGTCATAAATATCTCTTCCCTCAACCACAGAGACAAGCTCCACCAGACCTGACAACTACATGCTTTCCACCCGGATGGAAATACTACAATCAGTATTATCAACTTAAACCTGCCTGGTGCACACCGTAAAATCATAGATGAGGAAACCTTTGGCTGTATTCTCTACATTTCATCACAAAGAAAGATGGCCTTTCTCTGGATTACACCGTCTCCGTTTCGGATTGCATCTTTTTTCCCCCCCACATATTTCATCTGTAGTCTGGATTCAATCTcgcatttctcttttttttgctggaATAATTCTCTCTAGTTTGGATATAATCTCACTTTGGAATGGACATCTAGGATGGATGCTACGATCTCTGGTTTGAATGAAGTTGCTGTGTTTCAAGCTTTTCAAAAAGAACGTAAAGCAGCCAGCTGTCTAAACATCTCTGCTGTGGCATcccttccttctttttttgAAGCAGGATAAAATGGATATAGCTGTTTCCAGATTTGCGAAGAATGCAATTTGAAAGTAATGAACTGGCTTATTTACTGTGATTTGCAAAGATCACAGCgaaaaagagcaagaaagtGATGGAAGAGGATAACAGTAAAGGTGCATGGAAGGAAGTTCCTGTTCTAGCTATCCGTCTTTTTGTCCATCACTGGGTTTGGTTATGCAAAcgtatttgttaaaaaaaaaaaaaaaaaaaaaaattgaaattaaatattctCCTATGTTGATGTTCATTTCAATGGGGTGCTTTGGCCAGATTTGGAGAATCTCTTTATAGTGAAATGTATTGAAGGTTATATATTGTTctagaaataattgcaataatataatatcataatTACTCAGACCTGTCACCATGTACGCATGTCCTTGCATTTCATTATGTCCAGGTTTGCCTATGTGATTATGTTCATGGCCACTTGCGCTGTGGCTCTGGCTGGTTAACAAGAAATGCTAATCCAGCAAGCGACCTTTTGAGCCATCTACTACTTTCCTTCACTTAATTTTCCTCCAAATTGTCAACACACTGTTGCTgtgctgtctctctgtctctctcca

Function

symbol description
hacd1 Predicted to enable hydro-lyase activity. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Orthologous to human HACD1 (3-hydroxyacyl-CoA dehydratase 1).

NR:

description
PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1

GO: NA

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230328.3 True 2255 mRNA 0.44 7 22854584 22870140

Neighbor

gene id symbol gene type direction distance location
ncf2 ncf2 coding upstream 136019 22703645 ~ 22718565 (+)
prkdc prkdc,LOC107724397,LOC107742141,LOC107598697 coding upstream 170054 22612645 ~ 22684530 (+)
LOC103022164 abcf2b,abcf2,LOC103022164,LOC108440639,LOC108268161,LOC107684499 coding upstream 324291 22513286 ~ 22530293 (+)
smarcd3 smarcd3,smarcd3b,LOC103047704,LOC108442951,LOC108268163,LOC106578675 coding upstream 376602 22398129 ~ 22477982 (+)
nfx1 nfx1,LOC107742139,LOC108268165 coding upstream 462073 22360637 ~ 22392511 (+)
LOC111194171 NA coding downstream 23495 22893635 ~ 22896991 (+)
clul1 NA coding downstream 50870 22921010 ~ 22932711 (+)
tyms tyms coding downstream 64525 22934665 ~ 22939259 (+)
LOC103031382 NA coding downstream 121322 22991462 ~ 23003994 (+)
adcyap1 adcyap1 coding downstream 146641 23016781 ~ 23022412 (+)
G143382 NA non-coding upstream 55756 22754052 ~ 22798828 (+)
G143375 LOC101487086,LOC103370675 non-coding upstream 107776 22745712 ~ 22746808 (+)
G143374 NA non-coding upstream 108938 22743634 ~ 22745646 (+)
G143363 NA non-coding upstream 115649 22737043 ~ 22738935 (+)
G143343 NA non-coding upstream 164680 22689533 ~ 22689904 (+)
G143621 enosf1 non-coding downstream 69794 22939934 ~ 22942369 (+)
G143623 enosf1,LOC107086472 non-coding downstream 81173 22951313 ~ 22954599 (+)
G143626 NA non-coding downstream 86671 22956811 ~ 22958211 (+)
G143627 NA non-coding downstream 88128 22958268 ~ 22960220 (+)
G143642 NA non-coding downstream 198234 23068374 ~ 23069875 (+)
G143324 NA other upstream 244137 22535685 ~ 22610447 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other upstream 946270 21811291 ~ 21908314 (+)
G143122 LOC108436138 other upstream 1207879 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 1242902 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 1274860 21569082 ~ 21579724 (+)
LOC111194251 NA other downstream 515028 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 533548 23403688 ~ 23406894 (+)
G143836 NA other downstream 957808 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 1566239 24436379 ~ 24602402 (+)
G144017 NA other downstream 1836943 24707083 ~ 24711533 (+)

Expression


Co-expression Network