LOC103043942 (LOC108436149)


Basic Information

Item Value
gene id LOC103043942
gene name LOC108436149
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21333746 ~ 21338732 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231062.3
CCTCGGAGGGACCGCCCACAGGAGCGCGTCAGGAGGAAGTGGTGGTGAGCCGCGGTGAGGGAGCTGTTAGTCAGATGTTTAGAGTGGTGAAGTGTTTATGTTCTCAAATATCGGTCAGCTGAAGGGTATTACAgataaacactgaaacacaccgACAGTCTGAACAGCGGGGAAAGCGCTGCGAGAAGCAGCTCAGTTAGGAAACAGCAGGATTAGAAACACTGCGCTCGATTTTGAGGACGAACCAAACCCTTCGACTGGTTGAGTCCCGGTGAACCGATTCACTTAAAAGAGTCATTTGAAAAGCCTCGATTCACTCGCGTTTCAACATAGCGCTCATTTCTTCTCTGGAGTGAAATAGAGATGTACGGAGTTCTGTGTTTCTGGGTTTTACTGCAGGCTGTTTCTTCAGCTGACATCCCAACAGGAGTCAAGACTAACGACAGTCCGGTTATAGGTGTTCTCGCTCAGGAGGTGTATGCAGCCCCATCTGGCAAAAATGCTTACATCGCTGCCTCCTATGTTAAATATCTCGAGTCTGCAGGAGCGAAAGTCGTTCCAGTCATGATCAATAGGTCTGAGGAGGAGTATACCCGGCTGTTCAAATCCCTAAATGGaattcTTTTTCCAGGAGGTGGCGTCAGCATCACATCCTCTGGCTATGCCAAAGCAGCTGGTATATTCTACAGACTCGCTCTAGAGGCAAATTCAAAAGGTGATTATTTTCCTGTATGGGGAACTTGTCTGGGCTTTGAGCAGCTAACACTGTTGACTAGTGAGAAGTTACTACTCTCCCACACTAACACTTCTGGAGTTGCACTACCACTGAACTTCACCTCAGaGGTATCCGACAGTAGAATGTTCAAGGACTTCCCCAAAGACCTGATGACCTCACTGGCAAATGAGCCGCTAACAGAGAATTCTCATCAGTGGAGCATCACCACCGAGAGTTTTAAAGGTAATGAAAAGCTAAACAAGTTCTACCGAATTCTGAGCACCAACACAGACGGACAGAAGGAGTTTGTTTCCACAGTGGAGGCATATGACTACCCAGTCTATGGAACACAGTGGCACCCAGAGAAGAACACCTTCGAGTGGACTCGTCCATACATCCCTCACACACCCTCTGCCATCAAAACCACTTTCTATATGGCTGACTTTTTCGTCAATGAAGCAAAGAAGAGTCTTCATAGTTTTTCCAGCCAAGAAGAGGAGCAGAATGCTTTGATTTACAACTACAGTCCATCATACACTGGAAAGATGTCTGCGtttgaacagatttatttttttgcttagtttttttttttttttacttgtgctTAATAAAACTCTCAGTTTAAGTGagattgattttgattttgagtcATGCAAGTTGTGCTCTTGGGATATTAAActtatataacaaaataaa

Function

NR:

description
PREDICTED: gamma-glutamyl hydrolase-like

GO:

id name namespace
GO:0006760 folic acid-containing compound metabolic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0034722 gamma-glutamyl-peptidase activity molecular_function

KEGG:

id description
K01307 GGH; gamma-glutamyl hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231062.3 True 1411 mRNA 0.45 9 21333746 21338732

Neighbor

gene id symbol gene type direction distance location
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding upstream 325740 20888963 ~ 21008006 (+)
LOC111194340 NA coding upstream 520902 20803300 ~ 20812844 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding upstream 559591 20715544 ~ 20774155 (+)
LOC111194337 adcy1 coding upstream 666269 20611495 ~ 20667477 (+)
LOC111194338 LOC108440942,LOC108268057 coding upstream 759708 20556766 ~ 20574038 (+)
LOC111194246 LOC108436149,LOC108267579 coding downstream 848 21339580 ~ 21349632 (+)
penk penk coding downstream 171009 21509741 ~ 21527223 (+)
LOC103045570 sdr16c5,LOC108436143 coding downstream 191609 21530341 ~ 21562050 (+)
rps20 rps20 coding downstream 253308 21592040 ~ 21598440 (+)
LOC103047292 tmem68,LOC107584594 coding downstream 285661 21624393 ~ 21632573 (+)
G143010 nsmaf,LOC107739938 non-coding upstream 8887 21320890 ~ 21324859 (+)
G143008 nsmaf,LOC107739938 non-coding upstream 16751 21315265 ~ 21316995 (+)
G143003 NA non-coding upstream 38846 21294545 ~ 21294900 (+)
G142951 NA non-coding upstream 185158 21144945 ~ 21148588 (+)
G142948 NA non-coding upstream 220093 21113255 ~ 21113653 (+)
G143020 asph non-coding downstream 23866 21362598 ~ 21389925 (+)
G143034 sdcbp non-coding downstream 56959 21395691 ~ 21404675 (+)
G143052 NA non-coding downstream 111063 21449795 ~ 21450047 (+)
G143058 NA non-coding downstream 121163 21459895 ~ 21460361 (+)
G143112 NA non-coding downstream 242692 21581424 ~ 21582666 (+)
G142820 NA other upstream 543624 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1113597 20202648 ~ 20220149 (+)
G142620 NA other upstream 1465454 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 2440237 18856236 ~ 18893509 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 230350 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 259950 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 307173 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 472559 21811291 ~ 21908314 (+)
G143324 NA other downstream 1196953 22535685 ~ 22610447 (+)

Expression


Co-expression Network