LOC103045570 (sdr16c5,LOC108436143)


Basic Information

Item Value
gene id LOC103045570
gene name sdr16c5,LOC108436143
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21530341 ~ 21562050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231068.3
ATCCTCCACCGGTACCGCCGAGCCGCCAGCGGCCCGCTGACCTTTGTGCAGCGCTAAACACGTCGATAAACGGAGAGCAAGCGGGGCGAAGGTCGAGGCTGGGAGAGGACTGAGtgtgtgcagagagagagagaggagtgtgagGGTCCTGTctctgagctgtgtgtgtgtgtgtgtgtttatgagtgaGGTGGTTTATCGGGTCTCCGCTGTATCCTGTTACTGTTAGCTGGGCTGTGTAGTTGTGAGGGGCGGAAGCGGCGGCTGTGAGCTcggctgtgtgttgtgtttggtcTTTAAACGGGTCTAAAGCCGCTCGCTCGCGCTCAGGACAGTCATGAAGTTCCTGCTGGATACCCTGAAGGTGCTGCTGCTCTCGCTGTGGTTCAGCCTGGAGGCGCTGTGGCGCGCGCTCGTGCCCGCGCGCAGGAAGAGCGTTGCCGGGGAGACGGTGCTGCTGACGGGCGCGGGCAGCGGGCTGGGCAGGCTGATGGCGCTCGAGTTCGCGAGACTTGGCGCGAGACTCGTGCTGTGGGACATCTACGAGGAGGGTAACCTGGAAACGGCCCGGATCATCAAAGAGACGCATAACGTCCGCGCGCACACCTACACCTGCGACTGCAGCAAGAGGGAAGAGGTGTATAAAGTGGCTGATCAGGTCAAACGAGAAGTTGGAGACGTCACTATTCTGATAAACAATGCTGGAATCGTCACTGGCAAGAAGTTCCTACAATGCCCAGACTCTCTCATGCAGAAGACGATGGATGTCAACAGCACGGCCCACTTCTGGACATACAAGGCATTTCTCCCAGCGATGATTGCTGGAAACCATGGTCATCTGGTCAGCATCGCTAGCTCTGCTGGACTTGTCGGAGTCAATGGACTTGCAGatTACTGTGCGAGTAAGTTTGCAGCAATAGGCTTTGCAGAGTCTGTGGGATTGGAACTGTTGGCTTCAGGCTCTGATGGAGTGAAGACCACCATAGTCTGCCCCTTCTTCATCAATACTGGAATGTTTGAAGGAGCTAATACGAAGTTTCCCCGACTCATGCCGATTCTGGAGCCAGAATATGTGTGCAAAAAGATTATGGATGCAGTTCGAAGAGACCAGGTTTATCTGTGTCTCCCTCGTTTCATGTATCTTATCGTCGCTTTGAAGCATATTTTACCTGCTAAAATGGGAGTGATGCTCGGAGAGTATCTGGGAGCGTTTGATCTCATGGCTACGTTCAAAGGGCGAAAGAGCGACTGAGTTTGTCAACTGAAGACTGGAGCCTATTAATACAGCCATACAGCGTTGTAGAAGTGTGATAAAGGGGAGACAGATGGCACTGGCATCTGCATCTGCACACAGTGTGAAGAGCAACCACATTTAATGAATAACAAATCAACAAAGCTAGGAAGAATTACTGTTCTAACAGCTATGCAAGTCATTGGCAATCACAGGCATGACATCGAAGGCATAACTTAAAAGCACTTagtcatttaaatgtaaaattcctCTTGTAACCTAGTGTACAACTCAGTATATGATATAGCTCAGGAATAATACTTGAAAATCTCTGAAGTATATTGCTTTATCATGCACAGGTATAATGACATTATGATATGTGTAAAACAGTACCATATGTCTGTGCCTTGATAATAATTCTGTCTGTATTTTAATCTTAAACGAACAGCTTGATCTAGCCTAATATCCAATTGCATTTAATGTATAACAAAATTATGCATGCTATGCAAGTCTTTTAAGCTATCAAGGACATGAAGGAATACCCGAAAGCACTTtgtcatttaaatgtaaaaattctaTCATAACCCAGAATACAGTATAACTTCTGTAACATCTGTAAGTATGTGCTATAGCTCAGGTATAGTACTATAATGGACAGTGTATCATTTTGTTATGTGCAAGCATAACAACAATATTGTAACAGCGCTAAAAGTCTCAACCATGAGAAGGGATAGTCTGAAGCAAAGTcaaattaatgtgatttatcactCAACCAAGATGCAGTCGTTTGTTTCTTTCAGTTGTTTGTTTAGAACGGGAAATGTTACTCTTATATTGCTAAAACTCTGGATTTAAGGTGTTATCCAGATATTCATGATTTAATTCTAACATTTGTGCTGTTTAGAACACACAGGGGGCAATTTTCCATACAGGGATTAAGCCATAGACGTAGTCATAgacaatggaaaatctccattcaaaatgttctttagtccaagactaggcttaatccctgtctgggaaactgccttGGAATGTATGTAAAAGTAGACTAAAAGGCAACAGTTGAAAAGTGAAGACAAATAGTCTCTTTTGCACCCTCTGGTGGTTGACTGCAGCACAGTGTTTAACCATACCCTAACccatgtaccatatttttcgtactataaggcgcattaaaaTCTTTTAGATACCCCCAAAAtggtcagtgcaccttataatcttaTGTATAAGTtcaaccagtcaggttgtaatgaGCAGTacagccactctgctaaagtgcaTTGtgataaaggagtttcagtgaagattTTCTCCAGTATCAAGGCTAGAAAAGTATTAGCTagagctgctaaccacagcgctagctctttcgctgttcagaggcgagtatatcggactgtagtctgcacgtttaccatgttaaaacaagatacgtgagacgaaccgctagctgatagcgccctgggttactgaaaccctcagggttcctcagagtaGCATTGTCAAGTGGCATTAATaccgctaagcgctgctaaccccagctagcactgctgctaatcgtgctgttgaaaatactggaaatctaagcttactgtaaataaacagaagcgttttactcacccaaataaacagttttctccTTATTCCTTACTATTTTCACTCAAAATGCGCCTTATGAACCAAAATAGACGAAAATagaagaaaatagatgttcattgatagtttgctctataatacggtgcgccttatagtcagTAAAATACGGTAAGCAAACAGAGccagtatttgttttttttgctttggacAGTTCTTTCAGTTCTGCAAGTTCGTTGCACATTATTACCCACTTAATATCCTGCCCAGggttcttattttttataacattacaacacattttgtgtgtgtttctgatatGGGAGTGAGCATAGACATCCTTTTACTCTCATAAATAGTCTATGTTTTAGAACACAGTAAACAAAAACGAACTACTAGCTAAATGTGGGGGCAGCCATTTTAAGTGGTCAtctgattttagtttaatttggagaaaaaacgtttttggttttgtttacttatcaaGTTATGAAAGCTACAGTCTTTAGTCCAGTGTTTGCCTAGCAtctctcattttaaataaacaaagcagACTTTAGGTCCCAGACATGgcttgactgactgactgactgcatCTGGTAATAAAGTGATAaatcatgtttgtttgtttttaccctGATCTTTTACGTTAAATCTCAGAAGGAACTGGTTATTATTATGTCTATTAGAAGACTGATATGAAGGATGCATACAGTTTGTATGAATGTGCCTTGACTTATCACTCTTATGGAAACCTAATAAAAACTatgcctttaaatata

Function

symbol description
sdr16c5 Enables NAD-retinol dehydrogenase activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and transcription corepressor activity. Involved in several processes, including keratinocyte proliferation; regulation of histone modification; and retinoid metabolic process. Located in endoplasmic reticulum membrane and nucleus. Part of transcription repressor complex. Colocalizes with chromatin; endoplasmic reticulum; and plasma membrane.

NR:

description
PREDICTED: epidermal retinol dehydrogenase 2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K15734 SDR16C5; all-trans-retinol dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231068.3 True 3609 mRNA 0.43 6 21530341 21562050

Neighbor

gene id symbol gene type direction distance location
penk penk coding upstream 3118 21509741 ~ 21527223 (+)
LOC111194246 LOC108436149,LOC108267579 coding upstream 180709 21339580 ~ 21349632 (+)
LOC103043942 LOC108436149 coding upstream 191609 21333746 ~ 21338732 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding upstream 522335 20888963 ~ 21008006 (+)
LOC111194340 NA coding upstream 717497 20803300 ~ 20812844 (+)
rps20 rps20 coding downstream 29990 21592040 ~ 21598440 (+)
LOC103047292 tmem68,LOC107584594 coding downstream 62343 21624393 ~ 21632573 (+)
lypla1 lypla1,lypa1 coding downstream 156271 21718321 ~ 21724125 (+)
LOC111194247 NA coding downstream 178191 21740241 ~ 21747485 (+)
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding downstream 257478 21819528 ~ 21839338 (+)
G143058 NA non-coding upstream 69980 21459895 ~ 21460361 (+)
G143052 NA non-coding upstream 80294 21449795 ~ 21450047 (+)
G143034 sdcbp non-coding upstream 125666 21395691 ~ 21404675 (+)
G143020 asph non-coding upstream 140416 21362598 ~ 21389925 (+)
G143010 nsmaf,LOC107739938 non-coding upstream 205482 21320890 ~ 21324859 (+)
G143112 NA non-coding downstream 19374 21581424 ~ 21582666 (+)
G143114 NA non-coding downstream 72192 21634242 ~ 21642858 (+)
LOC111194179 NA non-coding downstream 93729 21655779 ~ 21658620 (+)
G143127 NA non-coding downstream 138772 21700822 ~ 21701945 (+)
G143172 mrpl15 non-coding downstream 149316 21711366 ~ 21715175 (+)
G142820 NA other upstream 740219 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1310192 20202648 ~ 20220149 (+)
G142620 NA other upstream 1662049 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 2636832 18856236 ~ 18893509 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 7032 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 36632 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 83855 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 249241 21811291 ~ 21908314 (+)
G143324 NA other downstream 973635 22535685 ~ 22610447 (+)

Expression


Co-expression Network