rps20 (rps20)


Basic Information

Item Value
gene id rps20
gene name rps20
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21592040 ~ 21598440 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231072.2
TGATGGTTTATAAGCTGTAGAGCAGGCCACTGCTCCTCCTTTTCCTGCTTAGCAGAAGAGACGGAGAGTTTGGTCTTCCTGACTCACCGCTGTTCGCTCCTTTTACACGAATAAGTCGGTCAGGAGTACACAATCATGgcatTCAAAGACACCGGCAAAGCTCCCGTTGAAACCGAGGTGGCCATTCACCGCATCCGGATCACCCTCACCAGCCGCAACGTCAAGTCTCTTGAGAAGGTGTGCGCTGATCTGATCCGTGGTGCTAAGGAGAAGAGCCTTAAGGTGAAGGGGCCAGTGCGCATGCCCACCAAGACCCTGCGCATCACCACCCGAAAGACTCCTTGTGGAGAGGGTTCCAAGACCTGGGACAGGTTTCAGATGAGAATCCACAAGCGCCTCATTGACCTTCACAGCCCATCTGAGATTGTCAAGCAGATCACCAGCATCAGCATTGAGCCCGGTGTCGAGGTGGAGGTTACCATCGCAGACGCATAAACTGCCTTGTGTTGCCAGATTGAGCTGCTTTGATCAAACTCATGTCAGCACAATAAAGAAATTAGAATTTGA

Function

symbol description
rps20 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of small ribosomal subunit. Orthologous to human RPS20 (ribosomal protein S20).

NR:

description
PREDICTED: 40S ribosomal protein S20

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02969 RP-S20e, RPS20; small subunit ribosomal protein S20e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231072.2 True 567 mRNA 0.52 4 21592040 21598440

Neighbor

gene id symbol gene type direction distance location
LOC103045570 sdr16c5,LOC108436143 coding upstream 29990 21530341 ~ 21562050 (+)
penk penk coding upstream 64817 21509741 ~ 21527223 (+)
LOC111194246 LOC108436149,LOC108267579 coding upstream 242408 21339580 ~ 21349632 (+)
LOC103043942 LOC108436149 coding upstream 253308 21333746 ~ 21338732 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding upstream 584034 20888963 ~ 21008006 (+)
LOC103047292 tmem68,LOC107584594 coding downstream 25953 21624393 ~ 21632573 (+)
lypla1 lypla1,lypa1 coding downstream 119881 21718321 ~ 21724125 (+)
LOC111194247 NA coding downstream 141801 21740241 ~ 21747485 (+)
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding downstream 221088 21819528 ~ 21839338 (+)
chmp5 chmp5,chmp5b,LOC108436133 coding downstream 251825 21850265 ~ 21856543 (+)
G143112 NA non-coding upstream 9374 21581424 ~ 21582666 (+)
G143058 NA non-coding upstream 131679 21459895 ~ 21460361 (+)
G143052 NA non-coding upstream 141993 21449795 ~ 21450047 (+)
G143034 sdcbp non-coding upstream 187365 21395691 ~ 21404675 (+)
G143020 asph non-coding upstream 202115 21362598 ~ 21389925 (+)
G143114 NA non-coding downstream 35802 21634242 ~ 21642858 (+)
LOC111194179 NA non-coding downstream 57339 21655779 ~ 21658620 (+)
G143127 NA non-coding downstream 102382 21700822 ~ 21701945 (+)
G143172 mrpl15 non-coding downstream 112926 21711366 ~ 21715175 (+)
G143189 NA non-coding downstream 256687 21855127 ~ 21956720 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 12316 21569082 ~ 21579724 (+)
G142820 NA other upstream 801918 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1371891 20202648 ~ 20220149 (+)
G142620 NA other upstream 1723748 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 2698531 18856236 ~ 18893509 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 242 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 47465 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 212851 21811291 ~ 21908314 (+)
G143324 NA other downstream 937245 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1786728 23385168 ~ 23395240 (+)

Expression


Co-expression Network