LOC103047292 (tmem68,LOC107584594)


Basic Information

Item Value
gene id LOC103047292
gene name tmem68,LOC107584594
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21624393 ~ 21632573 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231074.3
CGCGCCGCACCGCCTACCGGTGAGGGCTGTGAGAGGTTTCATTACAGGACGAGCCTCAGACTCGGGGCAGAAGCTTCATCCTGAAATAAAGAGAACAGTATTAagagctgcagctgctgcagcgAGGCTGCtgttagttttattatttaaagcagaTTAATTTTACGTGACGTTAGAGGATGTGACGACGTTTCTGCCATTGGGACTCCATGAGTGTGCACAAGATGCCCTCACTATGACAAAACCATGAGCTCCAGCATCATTTCCTGCCTGTGGGATGTGCTGTGGTGGGCTTGCACTCCTCTGGTGCTGTTTTTTCTCCTGCCTTTCGTCATTTTGTTCTTCGTCTACCTCTCcattctcttcctccacctttATAAAAGAAAGAACGAGCTGAAGGAGGCATACTCACACAAGCTGTGGCAATGTGCTCGAAAAACACTTGCCACAGTGTGGGATGCTCAAGGAACCATCTGGCATGGTTATGAGCTGCACGGTTTGGAGAATATTCCAGACTCCGGTCCTGCACTGATCGTGTACTATCACGGAGCCATTCCTATAGACTACTACTACTTCCTGGCCAAAGTCATTATTCTAAAGGGCCGGACATGCCACTCAGTAGCTGATCACATCCTGTTCAAGATGCCAGggtttAGGCTGCTATTGGAGGTGTTCAGTGTAATTCACGGTCCTCGTGAGGAGTGTGTTCGGGCGCTGCAGGACGGCCATCTGTTAGGAATCTCCCCGGGAGGTGTACGGGAAGCCTTGTTAAGTGACCACACATATCAGCTGCAGTGGGGAAAGCGTACAGGGTTTGCTCAGGTGGCTATAGACTCTAGAGCGCCTATTATTCCGATGTTTACACAAAATGTTAGGGAAGGGTTTCGGTCGCTTGGAACATTAAGATTTTTCCGATGGGTGTATGAAAGATTCCGTGTGCCAATAGCTCCTGTGTACGGGGGGTTTCCAGTAAAATTCCACACATTCCTTGGCAGACCCATTCTTTATGATCCAAATGTGACTGCCACAGAATTGGCCGAAAAGGTACAGGGAGCTCTGCATGCCCTGATTAAGGAGCATCAAAAAATCCCAGGCAGTATCATACGAGCACTGCTGGAGAGATTCTCACACACCTCACCATCGGcagaaaacatacaaacatcCAACAAGGAAGACTAGACCATGCTTTTACCTATTTGTACTGTTTGTAATTTGTGATCAATTTTTTGTGGACAGAAATGTAAAATCAAATGAAAATTTctaggaaagaaaaaaagtacaaaaattcATTATGGtaaaaagcatgaaaaaaattCTGGTACTTTTAGATGATATACCAATTTCGATAATTTTGCCTCAAAAGAAGCATCAAAATATCTTTGCTGTGCAATGAAAACCAAGTATCTCCAAATCAGCAACATTACAGGTCCGAGATCAATCcatctaaactttcaatgaaagtcaatgtaaaaagagtttccTTGGAAGatttcttttggtccattcttcaagaaattttaaaaatagagatacttttttttcattggacatcaACGATATGCTGTGTGACAAATGATTGGCTTAGAATTCTGTTACTGCcttagtaaatattttttgacaTTCACATGGtaaccaacaaaaaaatattataaaatgtagacaaaatgaacagtaaatttGTTTATCtgcaaaatacagaaaaagtgAAGTAACCGCAGGGATAGGTTCCTTCCGTCTGTTTCCAACACAAatgataaatgaaaatgaaatgtctTTGAAAcagttgtatttaaatattgtctACCAGTTTGTACATATGTATAAATACATATGCTAAGTTTTTATATTTGCTTACACAGACTACCTGTGGCCCTTGTCTTACCCGTGGCCCTTTTTGTGTGATGACCTAACCATTTTACACGTTTACACTTTGTAAAATTGTACTACTGTATTACTGTCTAAATGCCAGTCAAATTACCTGAAAACATACCTAAGAGCCTACTGATACATgtgaaaataattttatatttacatactgTCCACATGtatccagatatttttaaaaacaagattttctgttttatgaAAAGGTTCCTCTCCACAAAGACACAAAATGCTTGTGTGAGAAGGCTAGTCCTGTATGGGGTGATAGCACCTCATAAAAAAGAGACATTAACACTTCacaaagaagaaataaaaccaTGTTCTAGGTATATATGTGAAATAGAACAACACTTACATTCATTCATATGTCAAAATATGTCTAGAGTGATCTGCATGTAGTTTTATACCTCATGTAGTTCACTTTATAGGGAGTAAGAAGGTTTTTGTGATTCAGCTTGCAGAAACTTGCATGCATGTTGCATGCGTGTGCATTTTCATAAATCGCATGTATCCACACTGTATCACTTAAGTGACCaaaaatggtgtttttttatggaCGAGAGGccaaagatttttttgtaaatattcgGAAATGTGTGGACAGAGTCTTAAAATTTTGTCATGTTGTAATGGCAGCTCCAAAGACTGTACtgcaaaaaaatttaaaggTGCTGCACGTATGCAGGTGTgagtgtatgcgtgtgtgtgtgtatggtgcagttaaatattactgttaaaTGTTAATTATGTGGATATGTGCATTGATCTATGTGCATGCCTGCATATGGCAACAATAAatctaaatacattaataaa
>XM_022677649.1
attaaatctgTCATCAACCATCAAACTCAGTGGGCGGGCCTAACTCCAATCGGTTCAgactgattggttagattgcaCAGTGTGCACAAGATGCCCTCACTATGACAAAACCATGAGCTCCAGCATCATTTCCTGCCTGTGGGATGTGCTGTGGTGGGCTTGCACTCCTCTGGTGCTGTTTTTTCTCCTGCCTTTCGTCATTTTGTTCTTCGTCTACCTCTCcattctcttcctccacctttATAAAAGAAAGAACGAGCTGAAGGAGGCATACTCACACAAGCTGTGGCAATGTGCTCGAAAAACACTTGCCACAGTGTGGGATGCTCAAGGAACCATCTGGCATGGTTATGAGCTGCACGGTTTGGAGAATATTCCAGACTCCGGTCCTGCACTGATCGTGTACTATCACGGAGCCATTCCTATAGACTACTACTACTTCCTGGCCAAAGTCATTATTCTAAAGGGCCGGACATGCCACTCAGTAGCTGATCACATCCTGTTCAAGATGCCAGggtttAGGCTGCTATTGGAGGTGTTCAGTGTAATTCACGGTCCTCGTGAGGAGTGTGTTCGGGCGCTGCAGGACGGCCATCTGTTAGGAATCTCCCCGGGAGGTGTACGGGAAGCCTTGTTAAGTGACCACACATATCAGCTGCAGTGGGGAAAGCGTACAGGGTTTGCTCAGGTGGCTATAGACTCTAGAGCGCCTATTATTCCGATGTTTACACAAAATGTTAGGGAAGGGTTTCGGTCGCTTGGAACATTAAGATTTTTCCGATGGGTGTATGAAAGATTCCGTGTGCCAATAGCTCCTGTGTACGGGGGGTTTCCAGTAAAATTCCACACATTCCTTGGCAGACCCATTCTTTATGATCCAAATGTGACTGCCACAGAATTGGCCGAAAAGGTACAGGGAGCTCTGCATGCCCTGATTAAGGAGCATCAAAAAATCCCAGGCAGTATCATACGAGCACTGCTGGAGAGATTCTCACACACCTCACCATCGGcagaaaacatacaaacatcCAACAAGGAAGACTAGACCATGCTTTTACCTATTTGTACTGTTTGTAATTTGTGATCAATTTTTTGTGGACAGAAATGTAAAATCAAATGAAAATTTctaggaaagaaaaaaagtacaaaaattcATTATGGtaaaaagcatgaaaaaaattCTGGTACTTTTAGATGATATACCAATTTCGATAATTTTGCCTCAAAAGAAGCATCAAAATATCTTTGCTGTGCAATGAAAACCAAGTATCTCCAAATCAGCAACATTACAGGTCCGAGATCAATCcatctaaactttcaatgaaagtcaatgtaaaaagagtttccTTGGAAGatttcttttggtccattcttcaagaaattttaaaaatagagatacttttttttcattggacatcaACGATATGCTGTGTGACAAATGATTGGCTTAGAATTCTGTTACTGCcttagtaaatattttttgacaTTCACATGGtaaccaacaaaaaaatattataaaatgtagacaaaatgaacagtaaatttGTTTATCtgcaaaatacagaaaaagtgAAGTAACCGCAGGGATAGGTTCCTTCCGTCTGTTTCCAACACAAatgataaatgaaaatgaaatgtctTTGAAAcagttgtatttaaatattgtctACCAGTTTGTACATATGTATAAATACATATGCTAAGTTTTTATATTTGCTTACACAGACTACCTGTGGCCCTTGTCTTACCCGTGGCCCTTTTTGTGTGATGACCTAACCATTTTACACGTTTACACTTTGTAAAATTGTACTACTGTATTACTGTCTAAATGCCAGTCAAATTACCTGAAAACATACCTAAGAGCCTACTGATACATgtgaaaataattttatatttacatactgTCCACATGtatccagatatttttaaaaacaagattttctgttttatgaAAAGGTTCCTCTCCACAAAGACACAAAATGCTTGTGTGAGAAGGCTAGTCCTGTATGGGGTGATAGCACCTCATAAAAAAGAGACATTAACACTTCacaaagaagaaataaaaccaTGTTCTAGGTATATATGTGAAATAGAACAACACTTACATTCATTCATATGTCAAAATATGTCTAGAGTGATCTGCATGTAGTTTTATACCTCATGTAGTTCACTTTATAGGGAGTAAGAAGGTTTTTGTGATTCAGCTTGCAGAAACTTGCATGCATGTTGCATGCGTGTGCATTTTCATAAATCGCATGTATCCACACTGTATCACTTAAGTGACCaaaaatggtgtttttttatggaCGAGAGGccaaagatttttttgtaaatattcgGAAATGTGTGGACAGAGTCTTAAAATTTTGTCATGTTGTAATGGCAGCTCCAAAGACTGTACtgcaaaaaaatttaaaggTGCTGCACGTATGCAGGTGTgagtgtatgcgtgtgtgtgtgtatggtgcagttaaatattactgttaaaTGTTAATTATGTGGATATGTGCATTGATCTATGTGCATGCCTGCATATGGCAACAATAAatctaaatacattaataaa

Function

symbol description
tmem68 Predicted to enable acyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Orthologous to human TMEM68 (transmembrane protein 68).

NR:

description
PREDICTED: transmembrane protein 68 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231074.3 True 2700 mRNA 0.40 7 21626319 21632573
XM_022677649.1 False 2566 mRNA 0.39 7 21624393 21632573

Neighbor

gene id symbol gene type direction distance location
rps20 rps20 coding upstream 25953 21592040 ~ 21598440 (+)
LOC103045570 sdr16c5,LOC108436143 coding upstream 62343 21530341 ~ 21562050 (+)
penk penk coding upstream 97170 21509741 ~ 21527223 (+)
LOC111194246 LOC108436149,LOC108267579 coding upstream 274761 21339580 ~ 21349632 (+)
LOC103043942 LOC108436149 coding upstream 285661 21333746 ~ 21338732 (+)
lypla1 lypla1,lypa1 coding downstream 85748 21718321 ~ 21724125 (+)
LOC111194247 NA coding downstream 107668 21740241 ~ 21747485 (+)
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding downstream 186955 21819528 ~ 21839338 (+)
chmp5 chmp5,chmp5b,LOC108436133 coding downstream 217692 21850265 ~ 21856543 (+)
LOC103040396 myom1 coding downstream 247537 21880110 ~ 21938486 (+)
G143112 NA non-coding upstream 41727 21581424 ~ 21582666 (+)
G143058 NA non-coding upstream 164032 21459895 ~ 21460361 (+)
G143052 NA non-coding upstream 174346 21449795 ~ 21450047 (+)
G143034 sdcbp non-coding upstream 219718 21395691 ~ 21404675 (+)
G143020 asph non-coding upstream 234468 21362598 ~ 21389925 (+)
G143114 NA non-coding downstream 1669 21634242 ~ 21642858 (+)
LOC111194179 NA non-coding downstream 23206 21655779 ~ 21658620 (+)
G143127 NA non-coding downstream 68249 21700822 ~ 21701945 (+)
G143172 mrpl15 non-coding downstream 78793 21711366 ~ 21715175 (+)
G143189 NA non-coding downstream 222554 21855127 ~ 21956720 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 12711 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 44669 21569082 ~ 21579724 (+)
G142820 NA other upstream 834271 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1404244 20202648 ~ 20220149 (+)
G142620 NA other upstream 1756101 19736306 ~ 19868292 (+)
G143122 LOC108436138 other downstream 13332 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 178718 21811291 ~ 21908314 (+)
G143324 NA other downstream 903112 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1752595 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 1771115 23403688 ~ 23406894 (+)

Expression


Co-expression Network