lypla1 (lypla1,lypa1)


Basic Information

Item Value
gene id lypla1
gene name lypla1,lypa1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21718321 ~ 21724125 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231078.2
AgagctgatccagggtcagTTATCTGTAGCGCTGGTTAACTGTGAGCTGAGATACGGGCTGATCTGAGACCCGCGGGCTGTGTAGGAGCAGGACACGAGCGGAGGGTCACGGTGCGGCTCTCTAGCGTGTTTTCAGCTCCGCGGACAGGGAGAGACGGTCAGTCCGGACACGCAGCGCTGGATCACCGCCGGACTCgtttatatttacactgatttaattatataatagaAACACAGTTCGCGGGTGTTTCTACAGCTCGGTCTCGTGCTGTCAGGCTGGAGGCTGGGGTCGGCGGCCCGCGGGCTGAGTCGGGGTGTGATTTCTCGTGTTGAATGTAACGCTCCGGTCCGGTGTATGTGCGGTAATAACATGTCAGCGCCGCTGCCCGCGATAGTCCCAGCAGCCCGGAAAGCCACTGCGGCGGTGATCTTCCTCCATGGCCTAGGAGATACAGGGCATGGTTGGGCTGAAGCTATGGCTGGGATCAGGACCCCACATGTAAAGTACATTTGCCCCCATGCGCCCATCATGCCAGTTAGCCTCAACATGAACATGGCAATGCCCTCCTGGTTTGACATTATTGGTTTGAATCCAGATGCAGAGGAGGATGAGACGGGGATCAAAAAAGCTGCAGAGAGCATCAAAGCTTTGATTGATCAGGAAGTAAAGAATGGAATTCCATCTCATCGAATCGTACTGGGTGGCTTCTCTCAGggtggCGCACTTTCTCTCTACACAGCTTTAACCACTCAACAGAAACTTGCAGGAGTTGTTGCTCTGAGCTGCTGGCTTCCCCTCAGGAACTCACTTTCAAAGtcaGTTCTTGGCAGTAATAAGGAAGTTCCAGTATTACAGTGTCATGGGGAGGCAGATCCTCTGGTTCCTCTGATTTTTGGCTGTCTAACGGTGGAGAAGCTCAAGACAATGCTGAACCCCAACAACATTACCTTCAAAACATATCCCAGGATGCCTCACAGTGCTTGCCCAGAGGAAATGATGGATATAAAGCAGTTCATTGAGAAGCAGCTTCCTCCGATTGACTAATCAGTAAAGCCTTATGGATCGTGTGTACTGATCGTTAATTCCAGACTCTCCAGCTGCTATTTTTTCATCTGACCGAATGGAACACATACCAACACTCCCACACCTAACGGACTGAGCGTGATTGTAGTATCAATATATAATACTAAGCCTAACTGGAAACATCCTCAATTATATCCTCAGAGTCAGCCACAAACAATCATACAATAGTAACCTCTGACTGACACTGTAACCTGTTGCTTAGGGTAAAGATGGCTTGTCACAGACATATCACCTGTCAGAAATACAGATTCTAAGACTACTGTAGGGCTCATGAAACACAGCAGTCAGATCTGGAGGGCATTCGCTAATATTACAACAAAGCCATCTGTTTAAAGTAAGGTGTTTAGTTTATGGTAAAGGGCTTCTAATGTCTGAATTgatataattaaagtaaataatgaTGCTTTGA

Function

symbol description
lypla1 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLA1 (lysophospholipase 1).

NR:

description
acyl-protein thioesterase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K06128 LYPLA1; lysophospholipase I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231078.2 True 1493 mRNA 0.48 9 21718321 21724125

Neighbor

gene id symbol gene type direction distance location
LOC103047292 tmem68,LOC107584594 coding upstream 85748 21624393 ~ 21632573 (+)
rps20 rps20 coding upstream 119881 21592040 ~ 21598440 (+)
LOC103045570 sdr16c5,LOC108436143 coding upstream 156271 21530341 ~ 21562050 (+)
penk penk coding upstream 191098 21509741 ~ 21527223 (+)
LOC111194246 LOC108436149,LOC108267579 coding upstream 368689 21339580 ~ 21349632 (+)
LOC111194247 NA coding downstream 16116 21740241 ~ 21747485 (+)
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding downstream 95403 21819528 ~ 21839338 (+)
chmp5 chmp5,chmp5b,LOC108436133 coding downstream 126140 21850265 ~ 21856543 (+)
LOC103040396 myom1 coding downstream 155985 21880110 ~ 21938486 (+)
malrd1 NA coding downstream 233895 21958020 ~ 22107652 (+)
G143172 mrpl15 non-coding upstream 3146 21711366 ~ 21715175 (+)
G143127 NA non-coding upstream 16376 21700822 ~ 21701945 (+)
LOC111194179 NA non-coding upstream 59701 21655779 ~ 21658620 (+)
G143114 NA non-coding upstream 75463 21634242 ~ 21642858 (+)
G143112 NA non-coding upstream 135655 21581424 ~ 21582666 (+)
G143189 NA non-coding downstream 131002 21855127 ~ 21956720 (+)
G143282 NA non-coding downstream 661212 22385337 ~ 22385673 (+)
G143283 NA non-coding downstream 754541 22478666 ~ 22566331 (+)
G143334 NA non-coding downstream 845899 22570024 ~ 22576268 (+)
G143336 NA non-coding downstream 847588 22571713 ~ 22572857 (+)
G143122 LOC108436138 other upstream 71616 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 106639 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 138597 21569082 ~ 21579724 (+)
G142820 NA other upstream 928199 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1498172 20202648 ~ 20220149 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 87166 21811291 ~ 21908314 (+)
G143324 NA other downstream 811560 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1661043 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 1679563 23403688 ~ 23406894 (+)
G143836 NA other downstream 2103823 23827948 ~ 23916082 (+)

Expression


Co-expression Network