stard3nl (stard3nl)


Basic Information

Item Value
gene id stard3nl
gene name stard3nl
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11498055 ~ 11513466 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232501.3
CTGATGTTATACTACAACTCCCACAACTCCCTCTTCTAAACAGAGTGTGTTGGGTTTGATGGTGAGGCTGTGGGCCCTGAGGGAAGTTTGTTTGTCGGGCTGATGCAGGAGCGCCTCCAGCTCCCGCAGCTCTCAGTGCTGAGAGTAAAATCCGAATTAAAGACTGTCAGGAGATCAGCGGCGCAGCTCCGGTAACCggactgaggaggaggaggaacggTGGCCTGACTAATACTGAACACTAACAGCAGCGCCGCTGGATCTCCCCGTGTCTCTCGTTTACGGTTACTGTCCGGTCTTCACTGTGAAATACGctCAAGCAGGCATGTTTGCAGAGTGCGGTTCTTTGGACTGGTGAGAGGAAGCAGTGGGTGTGTCAGACTGACAGTGAGACCATGGCCAGCCAGTGCAGCAGCTTGGACTCCAGAGACACATTCCCGGTGGTGGGCTCTATTAACGCCACCCCTGTTGCTGCCCAGGTCGAATCATACGAAGGAGCGGAGAAAAAATGCATCTCTGACGTCAGGAGGACTTTCTGCCTGTTTGTGACCTTTGACCTCCTGTTTATCACACTGCTCTGGATAATTGAACTCAATGTCAATGGAGGAATACAAGACCAGCTAAAAAAGGAGGTGTTAGAATACGACTACCACAAGtccttttttgatatttttATTTTGGCTGCCTTTCGGTTTACAGTCTTAATCCTGGCATATGCAGTGTGCCGACTACGCCACTGGTGGGCAATCGCGatcACTACAGCAATCACCAGTGGTTTCTTGATTGCAAAAGTTATTATATCAAAGCTGCTCTCCCAGGGTGCATTTGGTTACCTGCTCCCCATCATCTCTTTCATTCTGGCGTGGATAGAGACGTGGTTTCTGGACTTTAAGGTTCTGCCTCAAGAAGCCAATGATGAGAACAGGTATATTACAATACACAGCGCCGCAGACACAGCTCCACTCATACACCCAGGACCTCTCTCAGACGGACAGTTCTATTCGCCACCAGAGTCTGTAGCAGattCTGATGAAGAGCTTGATGACAAGCATGACATTGAGAAGCCCCTCGTTTAGCAGGTAGTTCAGTGATTGCTCATATTATTTAAGgAGAATTGGGGTCACGAGGGAGACTGCAGACCTGCTGAATCAGATCATTAAAGCCTCAATGTGTGTGACTCGACCTTAAACTGGACCTGGAGCTGTTTCAGCACTTTCTGCTCTCTGTGGTTAACTGGACAGTCCATCTGCCTTGGATCCACCGTATCAACCTTCTACAGTGTCACTCTCTGCATCTCTCCAGCAACCAACCGACCAGTCAAGTTATTGGTGCGATCCGTCTACAGCACCACCTACAGCATCTTCCTCCTGCCCTGCTGTCTTAATCGATGCTGTGCCATACCTACACACACGGCCCAGATGTTTACACGGGTTTAAAATCACTGGTGGACAGATATCACGTTTCTGAATGGAGCTCTTGCTCgcttttgtttttctgcttcTGCTGCACTTTCACATCATGTTTTTTCTCGAGAAAGAAGCAGACGTGCTCTCGTTTATCACTCACTCAATCGTCGCTCTACTGTAGCAAACGGCTGCCATTGGTTATGTATTTAATACAACTTCCAAACAGCTTAAATTCACGATTAAGGGATTGTGAGATTGTCAAAGTGACAAACATAAAAAGCATTTACCTGCAAGGTTTAAATTGTGCCTGCACGACCAGTCTTTAACAGATCAGTGCATTTATTTCCATTATTCTTTCTCCTGTTCATTAGGCTTCCACTTTAACATTCTACCTATCaatctgtgtatatataagAAATTGATCTTATATTCAAATATTATAGACAGTTACACAacataaactataaatatatatctatagcCTGTAAAATGTCTGGAACAGTTGGTTTACCTGCAAATTAACTTGCAAAATAAAGGGCTCCCCTAGTTTTGCATGATCTTAATGAAATGAAGTCTGTTGCATCTATGAAGCATGAATGTCCTTCGTTGGTAATCGTTTGTTCAGGCTGTCTTTAAGCAAACACACCCAAAATAACTAGAGTGTATTAATTGAAAAATGACTCTGAATCATCCGTTATCATCTTTTTCCACGTTAATACTTAAGCTATACTTACAGATAAGGGCTTTTGCACCTGGTGCTCGTCTGGCACCCGCAGCCTTCTGGATGTACACTGTTAAGAAAGTGACTGACTTTTATCTGCACATACACTTCTTTGAAACTCTCATTGCCATTCTTTTTTCATGATAAAtgtgaatatatatttgttttaattaaagtttctgtttgtctttta
>XM_007232502.3
CTGATGTTATACTACAACTCCCACAACTCCCTCTTCTAAACAGAGTGTGTTGGGTTTGATGGTGAGGCTGTGGGCCCTGAGGGAAGTTTGTTTGTCGGGCTGATGCAGGAGCGCCTCCAGCTCCCGCAGCTCTCAGTGCTGAGAGTAAAATCCGAATTAAAGACTGTCAGGAGATCAGCGGCGCAGCTCCGGTAACCggactgaggaggaggaggaacggTGGCCTGACTAATACTGAACACTAACAGCAGCGCCGCTGGATCTCCCCGTGTCTCTCGTTTACGGTTACTGTCCGGTCTTCACTGTGAAATACGctCAAGCAGGCATGTTTGCAGAGTGCGGTTCTTTGGACTGGTGAGAGGAAGCAGTGGGTGTGTCAGACTGACAGTGAGACCATGGCCAGCCAGTGCAGCAGCTTGGACTCCAGAGACACATTCCCGGTGGTGGGCTCTATTAACGCCACCCCTGTTGCTGCCCAGGTCGAATCATACGAAGGAGCGGAGAAAAAATGCATCTCTGACGTCAGGAGGACTTTCTGCCTGTTTGTGACCTTTGACCTCCTGTTTATCACACTGCTCTGGATAATTGAACTCAATGTCAATGGAGGAATACAAGACCAGCTAAAAAAGGAGGTGTTAGAATACGACTACCACAAGtccttttttgatatttttATTTTGGCTGCCTTTCGGTTTACAGTCTTAATCCTGGCATATGCAGTGTGCCGACTACGCCACTGGTGGGCAATCGCGatcACTACAGCAATCACCAGTGGTTTCTTGATTGCAAAAGTTATTATATCAAAGCTGCTCTCCCAGGGTGCATTTGGTTACCTGCTCCCCATCATCTCTTTCATTCTGGCGTGGATAGAGACGTGGTTTCTGGACTTTAAGGTTCTGCCTCAAGAAGCCAATGATGAGAACAGGTATATTACAATACACAGCGCCGCAGACACAGCTCCACTCATACACCCAGGACCTCTCTCAGACGGACAGTTCTATTCGCCACCAGAGTCTGTAGCAGattCTGATGAAGAGCTTGATGACAAGCATGACATTGAGAAGCCCCTCGTTTAGCAGgAGAATTGGGGTCACGAGGGAGACTGCAGACCTGCTGAATCAGATCATTAAAGCCTCAATGTGTGTGACTCGACCTTAAACTGGACCTGGAGCTGTTTCAGCACTTTCTGCTCTCTGTGGTTAACTGGACAGTCCATCTGCCTTGGATCCACCGTATCAACCTTCTACAGTGTCACTCTCTGCATCTCTCCAGCAACCAACCGACCAGTCAAGTTATTGGTGCGATCCGTCTACAGCACCACCTACAGCATCTTCCTCCTGCCCTGCTGTCTTAATCGATGCTGTGCCATACCTACACACACGGCCCAGATGTTTACACGGGTTTAAAATCACTGGTGGACAGATATCACGTTTCTGAATGGAGCTCTTGCTCgcttttgtttttctgcttcTGCTGCACTTTCACATCATGTTTTTTCTCGAGAAAGAAGCAGACGTGCTCTCGTTTATCACTCACTCAATCGTCGCTCTACTGTAGCAAACGGCTGCCATTGGTTATGTATTTAATACAACTTCCAAACAGCTTAAATTCACGATTAAGGGATTGTGAGATTGTCAAAGTGACAAACATAAAAAGCATTTACCTGCAAGGTTTAAATTGTGCCTGCACGACCAGTCTTTAACAGATCAGTGCATTTATTTCCATTATTCTTTCTCCTGTTCATTAGGCTTCCACTTTAACATTCTACCTATCaatctgtgtatatataagAAATTGATCTTATATTCAAATATTATAGACAGTTACACAacataaactataaatatatatctatagcCTGTAAAATGTCTGGAACAGTTGGTTTACCTGCAAATTAACTTGCAAAATAAAGGGCTCCCCTAGTTTTGCATGATCTTAATGAAATGAAGTCTGTTGCATCTATGAAGCATGAATGTCCTTCGTTGGTAATCGTTTGTTCAGGCTGTCTTTAAGCAAACACACCCAAAATAACTAGAGTGTATTAATTGAAAAATGACTCTGAATCATCCGTTATCATCTTTTTCCACGTTAATACTTAAGCTATACTTACAGATAAGGGCTTTTGCACCTGGTGCTCGTCTGGCACCCGCAGCCTTCTGGATGTACACTGTTAAGAAAGTGACTGACTTTTATCTGCACATACACTTCTTTGAAACTCTCATTGCCATTCTTTTTTCATGATAAAtgtgaatatatatttgttttaattaaagtttctgtttgtctttta

Function

symbol description
stard3nl Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Orthologous to human STARD3NL (STARD3 N-terminal like).

NR:

description
MLN64 N-terminal domain homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232501.3 True 2320 mRNA 0.44 9 11498055 11513466
XM_007232502.3 False 2290 mRNA 0.44 9 11498055 11513466

Neighbor

gene id symbol gene type direction distance location
LOC111194197 NA coding downstream 109829 11386825 ~ 11388226 (-)
LOC103037030 NA coding downstream 300282 11184130 ~ 11197773 (-)
LOC103041893 ankh,ankhb,LOC108437249,LOC107713990,LOC107657429 coding downstream 321201 11127281 ~ 11176854 (-)
LOC103038167 LOC108437250 coding downstream 384661 11110129 ~ 11113394 (-)
LOC103040378 NA coding downstream 1031477 10447884 ~ 10466578 (-)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108437243,LOC108267170,LOC107713986 coding upstream 1457 11514923 ~ 11520037 (-)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding upstream 19362 11532828 ~ 11567921 (-)
rnf182 rnf182 coding upstream 54587 11568053 ~ 11573213 (-)
trnad-guc_16 NA coding upstream 242062 11755528 ~ 11755599 (-)
LOC103027519 NA coding upstream 306393 11819859 ~ 11832264 (-)
G140708 NA non-coding downstream 9754 11328689 ~ 11488301 (-)
G140735 NA non-coding downstream 72928 11424165 ~ 11425127 (-)
G140725 NA non-coding downstream 94173 11378307 ~ 11403882 (-)
G140618 NA non-coding downstream 308387 11115338 ~ 11189668 (-)
LOC103038501 NA non-coding downstream 394717 10995257 ~ 11103338 (-)
G140754 NA non-coding upstream 7994 11521460 ~ 11523962 (-)
G140798 NA non-coding upstream 175086 11688552 ~ 11692103 (-)
G140822 NA non-coding upstream 293366 11806832 ~ 11807230 (-)
G140823 NA non-coding upstream 303378 11816844 ~ 11818965 (-)
G140825 NA non-coding upstream 322043 11835509 ~ 11836832 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 983248 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 1152557 10311097 ~ 10345498 (-)
G140342 NA other downstream 1394598 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 1784018 9697155 ~ 9714037 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other downstream 2786956 8671024 ~ 8711099 (-)
G140772 fam134b other upstream 92769 11606235 ~ 11610529 (-)
G140975 NA other upstream 660229 12173695 ~ 12174994 (-)
G141020 NA other upstream 835093 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 959338 12472804 ~ 12572147 (-)
G141220 NA other upstream 1802425 13315891 ~ 13316365 (-)

Expression


Co-expression Network