LOC103027519


Basic Information

Item Value
gene id LOC103027519
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11819859 ~ 11832264 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232513.3
CAAAATGACCACTAACACGCCGTGCACGCATCTCACACATATACAACCCCGAGCACAGTAAACACCACATGCACAGCAGGCGAGGATAGGCCTCTTTGCAATGCTGCTTTTAAGACACTTGACGGATAGAACAACCCTGCTCTGTGGCTGCTCTCCCtccccttttctctttctctctctctgtctctttaatacactctctctctctcacacacacaaatcagagAGGTGTTCACTCATTCCCTTGGAGTTCGCTGCACAGGACGAGCCAGCGCTCAGTGCTCTCTGTCTTCATACGCAGCTCAGAGATAAGAAATTTGCCGACAGTGTTAAAAATGGTCCACACCACTGAGGACTACTACGATTTTGACGAGAATGAAAACATCAGCGGGAACTTTTCCTATGAGGACTACCAAACTGTCTGCCAGAAGGATGACGTCCGTGCCTTCGCGCAGATCTTCTTACCGGTCATGTACGGGTTATGTCTTGTAGTAGGCATAGCTGGAAATGTCCTGGTGGTGGGCGTGTATGCTTATAGCAAACGCCTGAAGACGCTGACGGACGTCTTTGTGGTTCACCTGGCCGTGGCCgacctgctcctgctgctgacCCTGCCTTTCTGGGCCACTGCTGCCATGCAAGGCTGGGAGCTTGGGGCTTTTCTCTGCAAGTTGGTCACTGCCATGTATACCATCAACTTCACGTGTAGCATGCTGCTGCTAGCCTGCATTAGCCTGGATCGTTACTTGGCGATAACACCGGAACTTAGGGAAAAGAACCTGGGCAAGATTTTCAGAAGGAACCACGCAGTCAAGCTCTGCCTTGCGGTGTGGACCATTGCGCTGCTTCTAGGGATTCCAGACTTGGTTCTGTCCACAGTCAAGACCTTCTCTGAGAGGAAGGTGTGCATGGCTGTGTATCCGTCAGACATGGCCTTCCAAACTAAGATCAGTATGGAAGTACTGGAGGTGCTTCTCAGCTTTCTTGTTCCGTTGATGGTGATGTTGTACTGTTATGCCCATGTGGTTCGGACCCTGCTGAAGCTGCCTCCAGAGAACCGTGGGAAGAGGTGGCGAGCCATTCGAGTGCTGTTAGCCGTGGTCTTAGCATTTGTCCTCACACAGCTTCCCTACAATGTGGTAAAGTTCTGCCGAGTGCTGGACGTGGCGCATGCCCTGGTGACCCACTGTGGTGTCAGTAAAGCACTGGACCGGGCCGCTCAGATCACAGAGACTTTCGCTCTGTTCCACTGCTGTTTGAACCCCGTACTCTACGTCTTTATCGGCTTGTCCTTCAGACAGCGTGTGCTGAAGGTCGCCAAGAGCTTCGGCCAGAGGAGGAGGTCGAGACAGAGGAGAGAAGATCAAGGAGTAGAGATCTCCTTCAATACACACTCAAACTCCCAGCACACAAGCACCTTCTCCATATGAGTATACCAAAGAGAGACAGACTTCTTTTTATCCTGTAAATTTAAGCAGAGTATTTCGTTTATTTGGCTTAAGTCAGTTCACAAGTTTTATGTTGCTGTTGTTGATACACATATTGaagctaacagagaatgttataagaatgtttagcaattttttaaaaatgttttagaaagGTTAGCTGTTCACATAAGCAAAATAATGTTACAGGAAGATTCTGAAAACGTGAAATATAATAATGCTAGACGAATACTAACATCATGGAAATGTTAacagtaacattcccaaaacgaAAAATTCAACATTGACGCAAGTGACGTTGCAGAAACGCCACCagagcatttaaaaacattaaacaaacttttaaataacatccagaaaacttgacagattgaacattcatagaacattaactgtaacgttcagaaaacattttactagcctttttttttttaaaaagaccaGTCTCCTATCTTTATGAATTAAGGCTAAAGTACTTGAAACTGAAGGTTGAATTACCATTTTAAAaccatattttaaatcactgatagaatctgataaaaaaaatctaataaatagtTTGTAGCTCAACAGCAGCTCAATAATGGCtcaataatacacaaaaaacatgattttgtgTACCTTGGATTGTTCAAAGTGTACTATACTGAGTGTTCaaactgtaaatgtttaaatttgaaTGCGAGTACTGGTTACACCATTTAGTTATAAGTTTCTTACTTAAACCTTACTTAAACAATCTAGGGACAGAATTATCCAACATCTGCCAATATCTGTGCTTATGTTTATGCTAAGCAAGCTAGCAAGCTAGCAATCTGACATGTTAGATTGTTGGCTATAGCCTCCGTGCACAAGATGACGCCATTCTACTTCCAGCCTTTGAGGGTGTGAGTTAAAAGTTCTGGATAAAGCACTTCCGTAGTTTGAGAATTGATACCAACACGAAGAGATAGCGAGCTAGTAGGACATAATGAGTGCATCCAGTACCACTTTGTCACGCTATAATGCCAAGATAAGTTTTCGCAAATTTCCTGTTGACACTGCACTGCATGCTAAGTGGCTAACTATGATCCGTAGGGACAAGTTCACTCCAACAGTGAACCCCCATGTGTGTAGCCAGTGTTTATCAGCTGTACACCCCAGTTACCTTGGCACTGCTTTTTAAGCATATAATTatccaatatgttttttttttttactgtttttatatgGTACAGTcaaatgaaaaagtttgggcacccctat

Function

GO: NA

KEGG:

id description
K04186 ACKR4, CCRL1, CCR11; atypical chemokine receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232513.3 True 2693 mRNA 0.44 2 11819859 11832264

Neighbor

gene id symbol gene type direction distance location
trnad-guc_16 NA coding downstream 64260 11755528 ~ 11755599 (-)
rnf182 rnf182 coding downstream 246646 11568053 ~ 11573213 (-)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding downstream 251938 11532828 ~ 11567921 (-)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108437243,LOC108267170,LOC107713986 coding downstream 299822 11514923 ~ 11520037 (-)
stard3nl stard3nl coding downstream 306393 11498055 ~ 11513466 (-)
LOC103031742 NA coding upstream 113162 11945426 ~ 11968401 (-)
LOC103032062 NA coding upstream 142484 11974748 ~ 12050443 (-)
LOC103032996 NA coding upstream 224571 12056835 ~ 12121276 (-)
LOC103028177 LOC108437218 coding upstream 751613 12583877 ~ 12589743 (-)
stam stam,LOC107664071 coding upstream 764556 12596820 ~ 12612107 (-)
G140823 NA non-coding downstream 894 11816844 ~ 11818965 (-)
G140822 NA non-coding downstream 12629 11806832 ~ 11807230 (-)
G140798 NA non-coding downstream 127756 11688552 ~ 11692103 (-)
G140748 NA non-coding downstream 289049 11474957 ~ 11530810 (-)
G140754 NA non-coding downstream 295897 11521460 ~ 11523962 (-)
G140825 NA non-coding upstream 3245 11835509 ~ 11836832 (-)
G140815 NA non-coding upstream 4913 11837177 ~ 11843218 (-)
G140882 NA non-coding upstream 95598 11927862 ~ 11930836 (-)
G140883 NA non-coding upstream 103605 11935869 ~ 11941666 (-)
G140887 NA non-coding upstream 125241 11957505 ~ 11962348 (-)
G140772 fam134b other downstream 209330 11606235 ~ 11610529 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 1305052 10511089 ~ 10514807 (-)
prkci prkci,LOC107668962,LOC107659412,LOC107706387,LOC107738175,LOC107591345 other downstream 1474361 10311097 ~ 10345498 (-)
G140342 NA other downstream 1716402 10035403 ~ 10103457 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other downstream 2105822 9697155 ~ 9714037 (-)
G140975 NA other upstream 341431 12173695 ~ 12174994 (-)
G141020 NA other upstream 516295 12348559 ~ 12415155 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other upstream 640540 12472804 ~ 12572147 (-)
G141220 NA other upstream 1483627 13315891 ~ 13316365 (-)
G141255 LOC108413406 other upstream 1604367 13436631 ~ 13438896 (-)

Expression


Co-expression Network