pex19 (pex19,LOC107591335,LOC107659417,LOC107684402)


Basic Information

Item Value
gene id pex19
gene name pex19,LOC107591335,LOC107659417,LOC107684402
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10163810 ~ 10169697 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234368.3
GGCGGAGACGCCGCTGCTGCGTCACTTCGTCCCCGGGCTCAGTGCGGAGTGAAGATGGCAGAGCAGCAGGCCGCGGACTCGGAGCTGGACGAGTTACTGGACAGTGCTCTCGATGACTTTGACAAGAACAGCGCGCCCCGTGCGGCTCCTGAAGCCGCTGCAGCTCCCAGTGAAGAAGCTAAAAGTGCAGGGCCAAATCCCCCTCTGCTGGAAGACAGTCAGTTCTTTGAGTCTCTTTTTGAGGGGGAGATGGCCAATCAGGCAAAGGAGGAGTGGGAGAGGGCAATGGCTGAGCTGGCGCAGGAAGAGCCAGAGCTGCTGCAGCATTTCCATAAACTGTCAGAGGCTGCTGGGAAAGTCGGCACAGATCCTGCTTCTCAGCAAGAGTTCACATCCTGCCTTAAAGAGACGCTGAGCGGATTAGCCAAAAACGCAGACAACCTGCAGGCCGCTGGACTGGCTGGAGATGATCTAGCAAAAACTCTAGAAGGGTTAGGATTGGAGGATGGTGAAGGCGCAGGGGAAGATGGGAACATTCTGCCAATCATGCAGTCTATTATGCAGAACCTCCTGTCAAAAGATGTCCTCTACCCCTCCCTCAAAGAGATCACAGAGAAGtaCCCAGAGTGGCTGAGCAGTAACAGACAGTCCCTCTCACCTGACGACCTCCACCGGTACGAACAGCAGCACAAAATAATGGGGGAGATCTGCAACCAGTTTGAGAGacaaggagaaaaagagagcacatttgaaaacattctagaactcaTGCAGAAGCTGCAGGATCTGGGACAGCCACCAAAAGAGCTCGCCGGAGAGGCACCACCTGGTTTGAACTTTGACCCGGAGTCACTGCACCTGCCCGGAGGTCTGGGTGCGGCCGGGGCTGATCAGTGTTCAGTGATGTGAGGCTgcagtgtttgtatgtgtgtgtgtgtttgcacccATCAAACCCTAAACCTGCCTCCCCCTCCTCTGCTCACTCTTCGTTCCCTGTAGTCACGCTGGAGCAGCCCAGTAACATTCTTTCTGCGGGTGAGGGTGGGGTTTACTCTGGTGGTTCAACTTGCTCATAGTAActaattttgcactttttgacCTGATCACAAGTCGAGCAGCTAGAACCGCGTGCCTGTTCCGTTAAAGATAGAGATGAGAACACCGTGGGAGGTGAGCGAATGGGATTTTAAAGTGTGACTCCAAGGAGGGACACTGGATCAATAATTATAGCAACTGCGAAATTAATAAGCTGTAATTTAAATGGTTAAtaatttttatacattatattttcagcatgtttattttttttaaacatgctgaaTCATTGTTCCGTTTCTTTTTCATAATTAATCAGTGACCAAAACTGATTTTCTTAATATTTCAGCCTTTAAAATTAAGTGGTTTTCACTTTTCTCCCTGAGTGAGCCTGATTAGCATAGTTTAGGTAGCCTTGTGTATTTTCCTTTTGTCTGATTACAGTGAATTGTATGCTGGATGATGTTTTGATCATCTAAAAGTGGATAGAAGTGATGCGTCTGATCTGTTTTGCCTTCTGAAATTCTTTACAAGTGGACATATTAGGCATTTTTGCAATATTAAAGGTATAATCCAGTGGTTTTAAAAGTGAAATCTGTACAGTAGCATTAGCAGTAGCATACGGTCAATTACTACAGACAATCATTTCAACATGAGCCTGGATAAGAACAGAAAACCATTTATCTAAAACTCACTTATAATAGGGTTCAGTGAGCAGATGCTTTAAAGATGTTCATCCTAATCTGCTTTATTTGTAGCAAATGATTGATTATCTCAGACTAATATAATTTTAACAATGTTGCTTTGAATCTGACTTATTATAGAAGCAAGTGGGACCATGCTAAAATTGTGTTCCATTGCTGTCCATTATAAgtatttttgattaaatattattattatttgacttTAATACCTAAATTTGTGTCTGGTAATTAATCATTTCCTAAACATGCAGCAAAAAAGAATAAAGCACCCCCTTACATAGCCATTGACTTCTACTGTAAGCATTGTTTGACTAAATGGCTTTTCTTTAACGATAGAAAACCCATATTGTCTATTGTAATTACCTGTATACTAAAATGCTGCAAATACTGTAGGGATGAATTAATACACACACCCTGCTTCCATTACAAACCTGTTAATACCAGTTCATtgtaaaagtgtaattttacaGATGATTATGCTCTGATTCAGCTCTGAGTTGTGTTTAATGATATTTATCTACCATTGTACCTCAGATAATGGGGGAATGTTCAAATTAAAATTCTTAAAGattgtgcttttattttgaaagctgAGTTTAAGGTATGTAGATATGGTTGTTAGCATAGATTTCAATGAGAGAAGAGCACATAACCTCAACACTCAGGAGTTCATTGAACACCTACGCACTTAAATCAGCTCAACCTTTCCTCACAGTACACAGTTATACCTGTCCACTACACTGTGAACAGAATACGCAACTAcagtgaagaaataaaaaacattaatcaaa

Function

symbol description
pex19 Predicted to enable peroxisome membrane targeting sequence binding activity. Predicted to be involved in protein import into peroxisome membrane. Predicted to act upstream of or within peroxisome organization. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 12A. Orthologous to human PEX19 (peroxisomal biogenesis factor 19).

NR:

description
PREDICTED: peroxisomal biogenesis factor 19

GO:

id name namespace
GO:0005777 peroxisome cellular_component

KEGG:

id description
K13337 PEX19; peroxin-19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234368.3 True 2530 mRNA 0.42 8 10163810 10169697

Neighbor

gene id symbol gene type direction distance location
LOC103041077 slc1a8b,LOC108444332,LOC107591333,LOC107557414,LOC107706395,LOC107738183,LOC105889468 coding upstream 16083 10130895 ~ 10147727 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107733878 coding upstream 259696 9897076 ~ 9904114 (+)
LOC103036973 LOC108430268 coding upstream 275233 9884209 ~ 9888577 (+)
LOC103040652 NA coding upstream 279684 9880166 ~ 9884126 (+)
LOC103040953 si:dkey-154p10.3,LOC108430290,LOC107736657,LOC108267397,LOC107730804,LOC107701000 coding upstream 287290 9862012 ~ 9876520 (+)
copa copa,LOC106600386 coding downstream 3247 10172944 ~ 10187687 (+)
LOC111194303 NA coding downstream 21114 10190811 ~ 10212330 (+)
LOC111194211 NA coding downstream 31127 10200824 ~ 10201754 (+)
samd7 samd7 coding downstream 49876 10219573 ~ 10234260 (+)
sec62 sec62,LOC107738178,LOC102781860 coding downstream 66025 10235722 ~ 10246002 (+)
G140274 NA non-coding upstream 7762 10098168 ~ 10156048 (+)
LOC103034722 NA non-coding upstream 33766 10125320 ~ 10130044 (+)
G140255 NA non-coding upstream 221531 9941028 ~ 9942279 (+)
G140251 NA non-coding upstream 237234 9926309 ~ 9926576 (+)
G140249 NA non-coding upstream 237767 9925133 ~ 9926043 (+)
G140297 NA non-coding downstream 28355 10198052 ~ 10201839 (+)
G140305 NA non-coding downstream 107180 10276877 ~ 10278511 (+)
G140331 NA non-coding downstream 137723 10307420 ~ 10307715 (+)
G140341 prkci,LOC107659412,LOC107558824 non-coding downstream 163131 10332828 ~ 10335069 (+)
G140391 NA non-coding downstream 191294 10360991 ~ 10361377 (+)
G140262 NA other upstream 169744 9993586 ~ 9994066 (+)
G140258 NA other upstream 173514 9989918 ~ 9990296 (+)
G140103 NA other upstream 418455 9743698 ~ 9745355 (+)
G140062 NA other upstream 623000 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 939829 9220274 ~ 9223981 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 141403 10311100 ~ 10345471 (+)
G140402 NA other downstream 225823 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 257569 10427266 ~ 10444540 (+)
G140520 NA other downstream 628848 10798545 ~ 10798891 (+)
G140659 NA other downstream 1210401 11380098 ~ 11383505 (+)

Expression


Co-expression Network