LOC103043450 (LOC103043450)


Basic Information

Item Value
gene id LOC103043450
gene name LOC103043450
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 15379678 ~ 15384906 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236094.3
AGCAGGAAGTGAGTGTTGCTTGGAGGCAGCAGCGCACTGTGTAGCAGTAAACAGTGAAACGCTGTTACAGAGTTTGTACTTTATATTAATGAGTTTTTCTGAACGGTGTTTAGTATGAGGAGCATGGCGCGCTTGAGCTCTGTACAGAAGCAGCTGCTGCGGGTGGTAGAGGCTTTAGTCAGGGCTGTAGTTGAAGAACTGTGTGAACTAGAAgatgtttctgttttaaaagtGAAGCCTGGAGCAGGAGCTGGACTACAGCAGGACAGTACAGCGataaAAGTCAATGCTGCTGTGGAAAAACTGACAAAAGACACAGTAGACCAACTTAGCCAGCTTTTCTGTCGACTATCCCAGGCCAAAGCTCCTCTATCCTACCTAAAGAGACAGAAATTGAGGAGAAAGAGGGTTTTGGTGGAGGCACAGCTGGCTAAGAGAAGAAGTTCAGTCCAGCTCAGGTTATCAGGAGTGCACATTCAGACTACTGCAACAGATACAACCAATGGAGACGAAGGAAAGGGTGCGATAGACCTCCTTTCTCAGACAGAGAGTCTCAGTGGAGAAATGGATCCTTTACTAGAAGACACAGCAGAGAACATATCTGAAGAAGTTCTTCCTCAGGAAGTGGAGGTTCAGCAGGAGACAATATTAAAGGTTGAACTGGAGCATGAACAGGAACAAGTGGAATGTTCTATGCAGCACTGTGATCAACAAGAAGAAGCGATACATAATCAAGGAAAGTCTGCGGTGAAGCCCATCAGCAAAGAGGAGGACGGCACTCAGAATACCTGCTCTCAGGCCATCAGCTCTGAAACACTGGAAATCAAGATATCAGCAGCACAGTCATTTGACGTGGGTCATGCACAGGAAGTCCCTGTGAAAAGACCTCCAGGAAGATCTCTCTCAGAAGGAGGCACTCGTAAGAAAGCAGCTGCAAGGAATCTGATTCAGTGTGATGCCTGCGACAAGACCTTCACTTACCTCAACAACCTGAAAAGACACCAGAAGATGTTCCACAGCGGGGAGACTCCTCACGCCTGCCAGGACTGTGGAGAACGTTTTGGCAGCAAGCGGCTCCTCCGCGTGCACCTCAGAGAGCACAGGGTGGAGAAGCCTCACGCCTGTAAGCTTTGTGAGAAGGTCTTCCGCCTTCCCAATCACTTGAAGAAACACATGACCAGCCACACCAATGAGAGACCGTTCATCTGCAGCACCTGTGGCAAGACCTTCGCCTTGGTGAGCACCCTTAGAGCTCATGAGAAGACTCACAGCGATGAAAAAACCTTCGTATGCACAGAGTGTGGCATGAGTTTCCTCACCAAGTCTTACCTGGACTACCATCAGCgagttcacactggagaaaagcCCTACACCTGCATGCACTGCGGCAAAACCTTCGCCCAAAAGAGCAACCTCCGAGTGCACGAGAGGCTCCACACTGGAGAAAAGCCGTTCCACTGCGAAGACTGCGGCGAAAGCTTCATACACGCCAACAGCTTCAAATCCCACAAGCAGCTGCACACAGGCATGAAGGCCTTCTGCTGCGAACACTGCGGCAAGGGCTTCCGTCGTGGAACCCACCTCAAAACTCATctgctgacccacactggcgtTAAACCCTTCCAGTGTGACTTATGTCCAAAGACTTTCGCCCTCAAAGGCTCACTAAAGGCCCACAGGCTcactcacactggagagaagagCTTTGTGTGTAACATTTGTAACAAGACATTCACTCAAGCCAGTTCTCTCGGAAAGCACAAGCGAACACACACTGGAGAGAAGCCTTATCTCTGCACCTTCTGCAGCAAGTCCTTCTGCCAAAGCAGCCACCTGCATTACCATTACCGAGCATTTCATCCAGGACAAACATCCTAGCTATAAAATGCTACCGGTACACATTATTGCCTTACATTATCTGTACgctgcacttttaaaaataGAGATGCTacagatatttagatattagttatttggtgaaataaagaAGAAccaattttggtttcataatGAATGAGTTTGTAACAAATATGTGTGAagtctacaatgtagaaaataaatgaaataaagaaaaacactgaatgagaagtggtgtgtccaaactttagacCTATGATACTGTGTGCATGCACTTGCTGTCATCAACCAGCACCAGCACTGTGCCAAATTCTGACTCCCAGCCACAATCTGATTCTTCTTAGAGGAATTCCTGTTTCTGAATAATTGTTATAGTTTTATCTtcacaacaaacaaaagaatGTTACTTTGGAGGAGTCAGATTTTGGCAGGGAAACAGAATAGGCACAGTACTGGTAATACAGCTGAACCACAACAGAGGCAGTGTGCATAAACATACCAGTTTAAAACATTCTGAATCTGATGTGGATGTTTATTATGCCATTTTCAATTTATTGTTAAGAAAAGTCctatacattttgtttaaagtaGGCTCATTGGTATTAATAGAACCAAAAGTGTTTCTACTGTGGCATTTTTTGTAACCCCTTTATTTTAGAACcaaaagtgtattaaaatgcttttacaCTATA
>XM_007236095.3
AGCAGGAAGTGAGTGTTGCTTGGAGGCAGCAGCGCACTGTGTAGCAGTAAACAGTGAAACGCTGTTACAGAGTTTGTACTTTATATTAATGAGTTTTTCTGAACGGTGTTTAGTATGAGGAGCATGGCGCGCTTGAGCTCTGTACAGAAGCAGCTGCTGCGGGTGGTAGAGGCTTTAGTCAGGGCTGTAGTTGAAGAACTGTGTGAACTAGAAgatgtttctgttttaaaagtGAAGCCTGGAGCAGGAGCTGGACTACAGCAGGACAGTACAGCGataaAAGTCAATGCTGCTGTGGAAAAACTGACAAAAGACACAGTAGACCAACTTAGCCAGCTTTTCTGTCGACTATCCCAGGCCAAAGCTCCTCTATCCTACCTAAAGAGACAGAAATTGAGGAGAAAGAGGGTTTTGGTGGAGGCACAGCTGGCTAAGAGAAGAAGTTCAGTCCAGCTCAGGTTATCAGGAGTGCACATTCAGACTACTGCAACAGATACAACCAATGGAGACGAAGGAAAGGGTGCGATAGACCTCCTTTCTCAGACAGAGAGTCTCAGTGGAGAAATGGATCCTTTACTAGAAGACACAGCAGAGAACATATCTGAAGAAGTTCTTCCTCAGGAAGTGGAGGTTCAGCAGGAGACAATATTAAAGGTTGAACTGGAGCATGAACAGGAACAAGTGGAATGTTCTATGCAGCACTGTGATCAACAAGAAGCGATACATAATCAAGGAAAGTCTGCGGTGAAGCCCATCAGCAAAGAGGAGGACGGCACTCAGAATACCTGCTCTCAGGCCATCAGCTCTGAAACACTGGAAATCAAGATATCAGCAGCACAGTCATTTGACGTGGGTCATGCACAGGAAGTCCCTGTGAAAAGACCTCCAGGAAGATCTCTCTCAGAAGGAGGCACTCGTAAGAAAGCAGCTGCAAGGAATCTGATTCAGTGTGATGCCTGCGACAAGACCTTCACTTACCTCAACAACCTGAAAAGACACCAGAAGATGTTCCACAGCGGGGAGACTCCTCACGCCTGCCAGGACTGTGGAGAACGTTTTGGCAGCAAGCGGCTCCTCCGCGTGCACCTCAGAGAGCACAGGGTGGAGAAGCCTCACGCCTGTAAGCTTTGTGAGAAGGTCTTCCGCCTTCCCAATCACTTGAAGAAACACATGACCAGCCACACCAATGAGAGACCGTTCATCTGCAGCACCTGTGGCAAGACCTTCGCCTTGGTGAGCACCCTTAGAGCTCATGAGAAGACTCACAGCGATGAAAAAACCTTCGTATGCACAGAGTGTGGCATGAGTTTCCTCACCAAGTCTTACCTGGACTACCATCAGCgagttcacactggagaaaagcCCTACACCTGCATGCACTGCGGCAAAACCTTCGCCCAAAAGAGCAACCTCCGAGTGCACGAGAGGCTCCACACTGGAGAAAAGCCGTTCCACTGCGAAGACTGCGGCGAAAGCTTCATACACGCCAACAGCTTCAAATCCCACAAGCAGCTGCACACAGGCATGAAGGCCTTCTGCTGCGAACACTGCGGCAAGGGCTTCCGTCGTGGAACCCACCTCAAAACTCATctgctgacccacactggcgtTAAACCCTTCCAGTGTGACTTATGTCCAAAGACTTTCGCCCTCAAAGGCTCACTAAAGGCCCACAGGCTcactcacactggagagaagagCTTTGTGTGTAACATTTGTAACAAGACATTCACTCAAGCCAGTTCTCTCGGAAAGCACAAGCGAACACACACTGGAGAGAAGCCTTATCTCTGCACCTTCTGCAGCAAGTCCTTCTGCCAAAGCAGCCACCTGCATTACCATTACCGAGCATTTCATCCAGGACAAACATCCTAGCTATAAAATGCTACCGGTACACATTATTGCCTTACATTATCTGTACgctgcacttttaaaaataGAGATGCTacagatatttagatattagttatttggtgaaataaagaAGAAccaattttggtttcataatGAATGAGTTTGTAACAAATATGTGTGAagtctacaatgtagaaaataaatgaaataaagaaaaacactgaatgagaagtggtgtgtccaaactttagacCTATGATACTGTGTGCATGCACTTGCTGTCATCAACCAGCACCAGCACTGTGCCAAATTCTGACTCCCAGCCACAATCTGATTCTTCTTAGAGGAATTCCTGTTTCTGAATAATTGTTATAGTTTTATCTtcacaacaaacaaaagaatGTTACTTTGGAGGAGTCAGATTTTGGCAGGGAAACAGAATAGGCACAGTACTGGTAATACAGCTGAACCACAACAGAGGCAGTGTGCATAAACATACCAGTTTAAAACATTCTGAATCTGATGTGGATGTTTATTATGCCATTTTCAATTTATTGTTAAGAAAAGTCctatacattttgtttaaagtaGGCTCATTGGTATTAATAGAACCAAAAGTGTTTCTACTGTGGCATTTTTTGTAACCCCTTTATTTTAGAACcaaaagtgtattaaaatgcttttacaCTATA
>XM_015602108.2
AGCAGGAAGTGAGTGTTGCTTGGAGGCAGCAGCGCACTGTGTAGCAGTAAACAGTGAAACGCTGTTACAGAGTTTGTACTTTATATTAATGAGTTTTTCTGAACGGTGTTTAGTATGAGGAGCATGGCGCGCTTGAGCTCTGTACAGAAGCAGCTGCTGCGGGTGGTAGAGGCTTTAGTCAGGGCTGTAGTTGAAGAACTGTGTGAACTAGAAgatgtttctgttttaaaagtGAAGCCTGGAGCAGGAGCTGGACTACAGCAGGACAGTACAGCGataaAAGTCAATGCTGCTGTGGAAAAACTGACAAAAGACACAGTAGACCAACTTAGCCAGCTTTTCTGTCGACTATCCCAGGCCAAAGCTCCTCTATCCTACCTAAAGAGACAGAAATTGAGGAGAAAGAGGGTTTTGGTGGAGGCACAGCTGGCTAAGAGAAGAAGTTCAGTCCAGCTCAGGTTATCAGGAGTGCACATTCAGACTACTGCAACAGATACAACCAATGGTAGGAAGGAGACGAAGGAAAGGGTGCGATAGACCTCCTTTCTCAGACAGAGAGTCTCAGTGGAGAAATGGATCCTTTACTAGAAGACACAGCAGAGAACATATCTGAAGAAGTTCTTCCTCAGGAAGTGGAGGTTCAGCAGGAGACAATATTAAAGGTTGAACTGGAGCATGAACAGGAACAAGTGGAATGTTCTATGCAGCACTGTGATCAACAAGAAGAAGCGATACATAATCAAGGAAAGTCTGCGGTGAAGCCCATCAGCAAAGAGGAGGACGGCACTCAGAATACCTGCTCTCAGGCCATCAGCTCTGAAACACTGGAAATCAAGATATCAGCAGCACAGTCATTTGACGTGGGTCATGCACAGGAAGTCCCTGTGAAAAGACCTCCAGGAAGATCTCTCTCAGAAGGAGGCACTCGTAAGAAAGCAGCTGCAAGGAATCTGATTCAGTGTGATGCCTGCGACAAGACCTTCACTTACCTCAACAACCTGAAAAGACACCAGAAGATGTTCCACAGCGGGGAGACTCCTCACGCCTGCCAGGACTGTGGAGAACGTTTTGGCAGCAAGCGGCTCCTCCGCGTGCACCTCAGAGAGCACAGGGTGGAGAAGCCTCACGCCTGTAAGCTTTGTGAGAAGGTCTTCCGCCTTCCCAATCACTTGAAGAAACACATGACCAGCCACACCAATGAGAGACCGTTCATCTGCAGCACCTGTGGCAAGACCTTCGCCTTGGTGAGCACCCTTAGAGCTCATGAGAAGACTCACAGCGATGAAAAAACCTTCGTATGCACAGAGTGTGGCATGAGTTTCCTCACCAAGTCTTACCTGGACTACCATCAGCgagttcacactggagaaaagcCCTACACCTGCATGCACTGCGGCAAAACCTTCGCCCAAAAGAGCAACCTCCGAGTGCACGAGAGGCTCCACACTGGAGAAAAGCCGTTCCACTGCGAAGACTGCGGCGAAAGCTTCATACACGCCAACAGCTTCAAATCCCACAAGCAGCTGCACACAGGCATGAAGGCCTTCTGCTGCGAACACTGCGGCAAGGGCTTCCGTCGTGGAACCCACCTCAAAACTCATctgctgacccacactggcgtTAAACCCTTCCAGTGTGACTTATGTCCAAAGACTTTCGCCCTCAAAGGCTCACTAAAGGCCCACAGGCTcactcacactggagagaagagCTTTGTGTGTAACATTTGTAACAAGACATTCACTCAAGCCAGTTCTCTCGGAAAGCACAAGCGAACACACACTGGAGAGAAGCCTTATCTCTGCACCTTCTGCAGCAAGTCCTTCTGCCAAAGCAGCCACCTGCATTACCATTACCGAGCATTTCATCCAGGACAAACATCCTAGCTATAAAATGCTACCGGTACACATTATTGCCTTACATTATCTGTACgctgcacttttaaaaataGAGATGCTacagatatttagatattagttatttggtgaaataaagaAGAAccaattttggtttcataatGAATGAGTTTGTAACAAATATGTGTGAagtctacaatgtagaaaataaatgaaataaagaaaaacactgaatgagaagtggtgtgtccaaactttagacCTATGATACTGTGTGCATGCACTTGCTGTCATCAACCAGCACCAGCACTGTGCCAAATTCTGACTCCCAGCCACAATCTGATTCTTCTTAGAGGAATTCCTGTTTCTGAATAATTGTTATAGTTTTATCTtcacaacaaacaaaagaatGTTACTTTGGAGGAGTCAGATTTTGGCAGGGAAACAGAATAGGCACAGTACTGGTAATACAGCTGAACCACAACAGAGGCAGTGTGCATAAACATACCAGTTTAAAACATTCTGAATCTGATGTGGATGTTTATTATGCCATTTTCAATTTATTGTTAAGAAAAGTCctatacattttgtttaaagtaGGCTCATTGGTATTAATAGAACCAAAAGTGTTTCTACTGTGGCATTTTTTGTAACCCCTTTATTTTAGAACcaaaagtgtattaaaatgcttttacaCTATA

Function

NR:

description
gastrula zinc finger protein XlCGF57.1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236094.3 False 2549 mRNA 0.45 5 15379678 15384906
XM_007236095.3 False 2546 mRNA 0.45 5 15379678 15384906
XM_015602108.2 True 2557 mRNA 0.45 5 15379678 15384906

Neighbor

gene id symbol gene type direction distance location
LOC103043145 LOC108440275 coding upstream 1143 15375965 ~ 15378535 (+)
LOC111194243 NA coding upstream 4274 15367518 ~ 15375404 (+)
LOC103042634 capn1,LOC108440273,LOC106608991,LOC107728026,LOC106578020 coding upstream 13347 15322011 ~ 15366331 (+)
LOC103038739 zgc:101810,LOC103038739,LOC108440263,LOC108267909,LOC107747924,LOC107692827,LOC105026763 coding upstream 552615 14818945 ~ 14827063 (+)
LOC103038426 LOC108440264,LOC100711751,LOC102308987,LOC104932298,LOC105026762,LOC106577861,LOC101481621 coding upstream 562282 14812279 ~ 14817396 (+)
trnae-uuc_20 NA coding downstream 28870 15413776 ~ 15413847 (+)
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding downstream 58915 15443821 ~ 15476215 (+)
LOC103044680 NA coding downstream 96881 15481787 ~ 15499505 (+)
efcab14 efcab14,LOC106569140 coding downstream 1542522 16927428 ~ 16940368 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding downstream 1609433 16994339 ~ 17004804 (+)
G141795 NA non-coding upstream 115998 15262792 ~ 15263680 (+)
G141790 LOC108440271,LOC101884025,LOC107692834,LOC103376102 non-coding upstream 141492 15223590 ~ 15238186 (+)
G141788 NA non-coding upstream 156368 15218508 ~ 15223310 (+)
G141771 NA non-coding upstream 170060 15154345 ~ 15209618 (+)
G141779 NA non-coding upstream 195628 15181633 ~ 15184050 (+)
G141814 NA non-coding downstream 16068 15400974 ~ 15405120 (+)
G141840 NA non-coding downstream 122444 15507350 ~ 15538748 (+)
G141845 NA non-coding downstream 129899 15514805 ~ 15532685 (+)
G141978 NA non-coding downstream 186672 15571578 ~ 15571813 (+)
G141981 NA non-coding downstream 1096573 16481479 ~ 16481682 (+)
G141791 NA other upstream 94221 15228710 ~ 15285457 (+)
G141740 LOC108440267 other upstream 322705 15054657 ~ 15056973 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other upstream 594866 14779181 ~ 14784812 (+)
G141495 NA other upstream 849382 14528140 ~ 14530296 (+)
G141410 NA other upstream 1178680 14180665 ~ 14200998 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 710 15385616 ~ 15401904 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other downstream 1563476 16948382 ~ 16967950 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other downstream 1587296 16972202 ~ 16985295 (+)
G142093 abcf3 other downstream 1673388 17058294 ~ 17073484 (+)
G142166 LOC108436878 other downstream 1818316 17203222 ~ 17204493 (+)

Expression


Co-expression Network