LOC103044992 (kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965)


Basic Information

Item Value
gene id LOC103044992
gene name kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 15443821 ~ 15476215 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236099.3
CATGAATTAAGAGGTACTGAGGCGGAGAAACAGAGAGCTGGACACTTATTTACATCTGCCATGAAAGACAGAGCTGAGGACAGAGGAGCAGGACTGCTCTCAAACTTACTGAAAACTTCCACCacctgaggagagagagagagagagagagagagagagagagaaaaagagagagagaactgctCTCATCCTTACATAATAACCCATCAGAGCGAGACTGGTACTGACACTCTGCTCACACTTCTGTAAAGTTAGTCTGAAACTCTTTGGGGGGCTGAACTTTTTCCCTGCTTTCCTGCTTTTCGATAAGAAACAATGTACAGAGTGGTGCTCAGAGCTGAGCGGAGAGACTGTAGCCCCCCGCGGACATGAGGACAGGGTCCCAGCTCGCTGATCGGACACTCTTCTCGGCCTGACTTCTCCTCTATGCTTCCCCAGCTTCACTGCTCGGAGTAGAAGTCGAAAAATCACGCTCTCAAACAAGCCACACTGAAGTCCTGATCAGAAGCCATGACTTCGGCCACTCCCCCCTCCTCACGCAGCCCCTCCCCCCAAAAGGTGTGCCACTCCCAGACGCAGACAGAGGTCCTGAAGCCGCTGCTGGGTGGAGGAGGCGGAGCTGCAGCAGGGGGCGGTCCTGCAGCACTGAGGAGGCGTCGGCGTGTGCTCTCAAAGGATGGGCGGAGCAACGTACGAATCGAACATGTCAGTGGCCGAGGTGCTCTCTACCTGCGTGACCTCTGGACGACCTTTCTGGACATGCAGTGGCGCTACAAGCTCTTCCTGTTCTCTGCCACCTTCGCTGGCACCTGGTTCGTCTTCGGAGTGCTGTGGTACCTGGTGGCACTGGTGCACGGAGACCTGCTGGAGTTTGACCCACCTTCCAACCACACCCCCTGTGTGATGCAGGTCCAGACACTAACGGGGGCTTTCCTCTTCTCACTGGAGTCACAGACCACCATTGGCTACGGCTTCCGTTGCATCACTGAAGAATGTCCGGCCGCCATCATCCTCCTCATTGTGCAGCTAGTCATCACTATGGTGATGGAGATCTTCATCACAGGGACATTTCTGGCTAAGGTGGCTCGGCCGAAGAAGCGTGGTGAGACAGTGAAGTTCAGTCAGCATGCTGTCGTAGCGAATCATGAAGGACGGCCATGTCTGATGATCCGTGTGGCCAACATGCGCAAGAGCCTGCTTTTGGGCTGTcagGTAACGGGTAAGCTGCTGCAGACGTCTCTAACTAAAGAGGGGGAGACTGTACGTCTGGACCAGAGGAATGTGGCATTCCAGGTGGACACATCCAGCGACAGCCCCTTCCTCATCCTTCCTCTCACATTCTACCACATCATCGACGACAGCAGTCCACTCCGTGCCTGGGCCGCCAAGGGTGGTGGATGGACAGATCCAGATCTGGCGGATTTTGAGCTGCTGGTAATAATGAGCGCCACGGTGGAGCCCACCTCAGCTACCTGCCAGGTGCGCACCTCCTACCTGCCTGATGAGATCCTGTGGGGCTACGAGTTCCCCCCTGTCGTCTCACTCTCGCCCTCGGGGAAATACGTGGCCGATTTCGCCTTCTTCGACAAAGTCGCCAAGACTAAGAccccgcctctttttaaacaggCCCCGCCTCCAAGCCCCCAGTCACCCCGTTATAAAGGTAGCGGTGGAGGGGGTGGAACTGGGGGGTCGGACCCGGAGAAGATGAGGCTGGAGGAGAGCTATCGAGAGGAAAAGGGGCGGGACAGGGGCCGAATTCGAGATAGCAGCCCACTTAGTGTTCGCATTAGCAATGTGTAgcgagagacagatagagagatacagacaaagaaagagagagagaaagagagagagaggtgggagTACAGATTCAGATCTCAgccatgtttttatttgatgagTAAAACTTATCTGTTTATACTAGAAAGTGTGCCAGTAAAACTGTATGGAGAACACTGTATGTCCAAAGgttatatatcgtcgctgtccaatgaaaaacatttatctccaaaacagcaactttacagtagagagaaaaaaaccttgt

Function

symbol description
kcnj10 Predicted to enable inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within several processes, including adult walking behavior; ion transmembrane transport; and regulation of resting membrane potential. Predicted to be integral component of plasma membrane. Predicted to be part of astrocyte projection and cell body. Predicted to be active in ciliary base and plasma membrane. Implicated in EAST syndrome and autosomal recessive nonsyndromic deafness 4.

NR:

description
PREDICTED: ATP-sensitive inward rectifier potassium channel 10-like

GO: NA

KEGG:

id description
K05003 KCNJ10, KIR4.1; potassium inwardly-rectifying channel subfamily J member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236099.3 True 2050 mRNA 0.54 6 15443821 15476215

Neighbor

gene id symbol gene type direction distance location
trnae-uuc_20 NA coding upstream 29974 15413776 ~ 15413847 (+)
LOC103043450 LOC103043450 coding upstream 58915 15379678 ~ 15384906 (+)
LOC103043145 LOC108440275 coding upstream 65286 15375965 ~ 15378535 (+)
LOC111194243 NA coding upstream 68417 15367518 ~ 15375404 (+)
LOC103042634 capn1,LOC108440273,LOC106608991,LOC107728026,LOC106578020 coding upstream 77490 15322011 ~ 15366331 (+)
LOC103044680 NA coding downstream 5572 15481787 ~ 15499505 (+)
efcab14 efcab14,LOC106569140 coding downstream 1451213 16927428 ~ 16940368 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding downstream 1518124 16994339 ~ 17004804 (+)
LOC111194332 NA coding downstream 1758984 17235199 ~ 17304091 (+)
LOC103034870 NA coding downstream 3277592 18753807 ~ 18785358 (+)
G141814 NA non-coding upstream 38701 15400974 ~ 15405120 (+)
G141795 NA non-coding upstream 180141 15262792 ~ 15263680 (+)
G141790 LOC108440271,LOC101884025,LOC107692834,LOC103376102 non-coding upstream 205635 15223590 ~ 15238186 (+)
G141788 NA non-coding upstream 220511 15218508 ~ 15223310 (+)
G141771 NA non-coding upstream 234203 15154345 ~ 15209618 (+)
G141840 NA non-coding downstream 31135 15507350 ~ 15538748 (+)
G141845 NA non-coding downstream 38590 15514805 ~ 15532685 (+)
G141978 NA non-coding downstream 95363 15571578 ~ 15571813 (+)
G141981 NA non-coding downstream 1005264 16481479 ~ 16481682 (+)
G142040 NA non-coding downstream 1310863 16787078 ~ 16787609 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 41917 15385616 ~ 15401904 (+)
G141791 NA other upstream 158364 15228710 ~ 15285457 (+)
G141740 LOC108440267 other upstream 386848 15054657 ~ 15056973 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other upstream 659009 14779181 ~ 14784812 (+)
G141495 NA other upstream 913525 14528140 ~ 14530296 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other downstream 1472167 16948382 ~ 16967950 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other downstream 1495987 16972202 ~ 16985295 (+)
G142093 abcf3 other downstream 1582079 17058294 ~ 17073484 (+)
G142166 LOC108436878 other downstream 1727007 17203222 ~ 17204493 (+)
G142378 gpaa1 other downstream 3380021 18856236 ~ 18893509 (+)

Expression


Co-expression Network