trmt10b (trmt10b)


Basic Information

Item Value
gene id trmt10b
gene name trmt10b
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14548108 ~ 14551573 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238407.3
TTTGGTCGCGGTGTGTCACGGTGAGCTCACAGGACCCGAGTTTATGAGTTTCTCCGTTTAACTGAACTGTTTTCCTCCTGTTTATCTGCGCCTCGTCGCTGTCTTGGAGATGAATGTAGACATACAGCTCTCAGAGAAGAGCTCCAGCTGTGAAGAGCAGCCGCAGAAGCTCCAGCATGTGGACTCTGTGTCTGATATGATGGAGCTGCTCAATATTGATGTGGAATTGGACTCCAGTTCCGCTAACCGAGAGGAATCTGCCCTGATCTGCTCTAAGAATGTCATGAGAAAGCAGCGGAACTGGGAGAGAAGGCTGGAGGCTAAGAAAAGCAAAAGGAAAGAGGAAAAACTCAGGAGGAGGCAGAACCAGCAAGAAAAAGACGTGGACCCACAGTTTAGTAAACGTGTCATCAAGGCGATCACCAGGGAGCGACTAGAGGAGGCCAGAACAAGTGGACCAAGACTATGTGTTGATCTGAGCATGACTGACTGTATGTCACACAAAGAGATCAGTCGTCTTGCCGGTCAAATAAGAAGACTCTATGGGTCCAACAAAAAAGCCTTGCAGCCTTTCcatctctttctgtctgacCTAAAAAAGGATGGTCTGCTTTACAGGGAATGCATCAGAATGAATGATGGCTTTCTCAACTACATGATAGATGTCACTGAAGAGAGCTGGATAGATTTATTTCCCTCCCAAGACATTGTTTACTTATCTCCAGATGCAAGTGAAGCTTTAGAGCGAGTTGATGAAGACAAAGTCTACATTCTTGGAGGTCTTGTTGATGAGAGCATTCAAAAGAAAATAAGCTACACAAGAGCGAAAGAGCTTGGTGTTTACATGGCGAGGCTGCCCATTGATGAGTACATGGTGAAGAAACCCAACCCCAAGAACTTTCACTCGAAAATTCTAGCCATCAATCAAGtgTTTGAAATCCTGCTGAAGTTTCGTGACACTGGAAATTGGATCACAGCCCTTGGTGCGGGGATTCCAGCAGGGAAAGGATATGTGGTGTCTTCTGAAGCTGTACAACGATGACAATTGATGTGCACTagtcacatacagtacaggccaaaataaggtgtgtttggacacaccttatctttttcaatgcgttttctttatttttt

Function

symbol description
trmt10b Predicted to enable tRNA (guanine-N1-)-methyltransferase activity and tRNA binding activity. Predicted to be involved in mitochondrial tRNA processing. Predicted to act upstream of or within methylation. Predicted to be active in nucleoplasm. Orthologous to human TRMT10B (tRNA methyltransferase 10B).

NR:

description
PREDICTED: tRNA methyltransferase 10 homolog B isoform X1

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K15445 TRMT10, TRM10, RG9MTD; tRNA (guanine9-N1)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238407.3 True 1134 mRNA 0.45 8 14548108 14551573

Neighbor

gene id symbol gene type direction distance location
LOC111194241 NA coding upstream 31034 14515470 ~ 14517074 (+)
LOC111194240 NA coding upstream 35169 14511793 ~ 14512939 (+)
LOC103041924 NA coding upstream 47918 14488431 ~ 14500190 (+)
LOC111194238 NA coding upstream 59687 14477554 ~ 14488421 (+)
LOC103039460 LOC108268156 coding upstream 75588 14461990 ~ 14472520 (+)
intu intu coding downstream 18796 14570369 ~ 14598691 (+)
aadat aadat,LOC102781018 coding downstream 48953 14600526 ~ 14617363 (+)
mfap3l mfap3l,LOC107553514,LOC107735698,LOC107696726 coding downstream 70584 14622157 ~ 14628563 (+)
LOC103039980 NA coding downstream 81505 14633078 ~ 14647184 (+)
pfdn2 pfdn2,LOC107745204 coding downstream 154279 14705852 ~ 14708676 (+)
G141514 NA non-coding upstream 1069 14545797 ~ 14547039 (+)
LOC111194203 NA non-coding upstream 29664 14517346 ~ 14518444 (+)
G141501 NA non-coding upstream 61491 14485020 ~ 14486617 (+)
LOC111194202 NA non-coding upstream 105776 14440905 ~ 14442332 (+)
G141467 NA non-coding upstream 311456 14222563 ~ 14236652 (+)
G141516 NA non-coding downstream 1060 14552633 ~ 14553089 (+)
G141525 NA non-coding downstream 13811 14565384 ~ 14567961 (+)
G141548 NA non-coding downstream 90907 14642480 ~ 14642690 (+)
G141543 NA non-coding downstream 233377 14784950 ~ 14786374 (+)
G141711 NA non-coding downstream 275708 14827281 ~ 14829927 (+)
G141495 NA other upstream 17812 14528140 ~ 14530296 (+)
G141410 NA other upstream 347110 14180665 ~ 14200998 (+)
G141361 tcea1 other upstream 689503 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1687781 12842798 ~ 12860327 (+)
G141086 NA other upstream 1804655 12741473 ~ 12743453 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 227608 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 503084 15054657 ~ 15056973 (+)
G141791 NA other downstream 677137 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 834043 15385616 ~ 15401904 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other downstream 2396809 16948382 ~ 16967950 (+)

Expression


Co-expression Network