G41548


Basic Information

Item Value
gene id G41548
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3740194 ~ 3742496 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU47168
GTAATGCAATATTGTGATGCATTTCTTTTAAAAGTATCTTTTCCCTCTGTAAAAACCTTCTGAATATAGAATACAGAACTGGAAGTTTTGGTGTATGTAAGTGCTATTGAAGTGGATATTTCTGGTTCAGTGCAGGTGAAAAAACTCATTTTGAGAAAACGGCCTTTGAAGATGCATTGTAAATTGGAATCTACAGACACAAATAAAGTTTATTAAAATAAATGCTTAAATGTGTATTATGGATGTTTTCTTTCCACTGTAGTCTGAAAGAAGACATGTTATGGAAGCAAAATATAGCCCAAAATCTCAGACCAGTGTATGAAAAAACAATGGTTTTGACCGCAGTGCCTTGCCTTAAGTAAGCTAAACATCTTTATTTTAAATTTTGATGATGAATAACTATTTAATACTTTAATAAATACACTTGACCTTCATTTCTCAGGTAAAACAGAACATTGTATGAGTGAAATGCAAGGTTGAGGTCAATGCTTAAAGACTGTTGAATGCTTCAAATTGTACTTGTAGGACACACTTTACCAGGGGGATTGTGGAAATAGGTCATACCTATTAACCTGATTCTAGATCTTTGATCACATCTGATACAAATTAGTCTGTTACGTACATGCTGGTATAATAAGGCGCATTTATAGGCATGCAGGATTACCACTGATCTGATTCTTGCTTGCCACATTTTCAACCCTCACCTTGATTCGACAAAAACTGGCTTCAATCTTCAGCTGTTCCACCAGCTTCCTAGCCTGACCGACGCTCATGGTGCTGTTCACAGGGGTGTCTCCTTTCATCCTGCCACCCTTGCTGAATTCCTCTTGTGGTGATATCTCGCCCTCCTCTTCTTTCTTATTCCTTCTCTCTCTCTTTCTCTATCTGCCTGTGTTGTTGCTTTCAGTGCAGCCGGACCGCACCCTCATAGACAGTGTGGATGCTACCCAGTTCTGTACAGTCCAGTGCACTGCAATTCTGCTACAATGAACACCAGTCTCTTGGTACATACATAAAACACCCCTCTGCAGTGAGTGGAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47168 True 1042 lncRNA 0.45 2 3740194 3742496

Neighbor

gene id symbol gene type direction distance location
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L coding upstream 4456 3734554 ~ 3736035 (+)
CI01000006_03607868_03614573 LRFN4A coding upstream 125259 3607255 ~ 3614935 (+)
CI01000006_03548703_03554763 PPP1R14BA, PPP1R14B coding upstream 185431 3548703 ~ 3554763 (+)
CI01000006_03483581_03526564 SLC8A4A coding upstream 212992 3483581 ~ 3527202 (+)
CI01000006_03446979_03447865 NA coding upstream 292278 3446979 ~ 3447916 (+)
CI01000006_03744756_03759381 NA coding downstream 1828 3744324 ~ 3759825 (+)
CI01000006_03760594_03770397 NXF1 coding downstream 17779 3760275 ~ 3770797 (+)
CI01000006_03808166_03810807 NA coding downstream 65589 3808085 ~ 3810807 (+)
CI01000006_03837017_03839129 NA coding downstream 94521 3837017 ~ 3839251 (+)
CI01000006_03858455_03862082 RCE1B coding downstream 115959 3858455 ~ 3862368 (+)
G41523 NA non-coding upstream 13695 3725866 ~ 3726499 (+)
G41498 NA non-coding upstream 18525 3703620 ~ 3721669 (+)
G41672 NA non-coding upstream 95955 3642819 ~ 3644239 (+)
G41637 NA non-coding upstream 172219 3567598 ~ 3567975 (+)
G41716 NA non-coding downstream 34109 3776605 ~ 3776903 (+)
G41729 NA non-coding downstream 88408 3830904 ~ 3831126 (+)
G41732 NA non-coding downstream 97255 3839751 ~ 3840006 (+)
G41743 NA non-coding downstream 107297 3849793 ~ 3850026 (+)
G41499 NA non-coding downstream 107973 3850469 ~ 3853876 (+)
G41591 NA other upstream 900773 2836167 ~ 2839421 (+)
G41424 NA other upstream 1079624 2645662 ~ 2660570 (+)
G41170 NA other upstream 2044373 1692065 ~ 1695821 (+)
G40768 NA other upstream 3247168 488407 ~ 493026 (+)
G41996 NA other downstream 1374710 5117206 ~ 5124149 (+)
G43896 NA other downstream 2027593 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2365988 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2379539 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 3424293 7166778 ~ 7168925 (+)

Expression


Co-expression Network