LOC103034112 (LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292)


Basic Information

Item Value
gene id LOC103034112
gene name LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18794903 ~ 18816397 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240015.2
TACTGTAGCCGGAGCAAGATATCAGCTTTACTGTAATCAGGGACAGCtgggggcagagagagagagaaagagagatagagagagagacaagcagggaaagaggagagagaggggaacaGGGGGCTGTAGTCCAAATAACACATCCCACCCCTCCCTGTCTCGGTCCGCTTTCTGCGGGGCAGGTTAATCTGCAGCAGCAGTCTGTGATACTGACGGCTGGAGGGGAGAGTTACAGAGCTACCTACCCGAACAAGCGCGGAGGGACCACGGCAGAGGATCCAGAGAGTGGACGGCTGGACGGCTGACTCGTCTTCTTGGTTCTTGTCAGCTTCtccgtgcgtgtgtgtgtgagagagtgagtgtgtgtgtatgagtgagtgagagaaaaagagtgtgtttgtgtgtttgttgctcACGATGGGAAACGCTGCGGCCGCCAAAAAGGGCAACGAGCTGGAGAGCGAGACTTTTGtaAAAGAGTTTTTAGCCAAAGCCAAAGAAGATTTCCTCAGAAAATGGGAATGTCCACCACAGAGCACCACTACTCTAGATGACTTTGAGAGACTGAAGACTCTCGGCACAGGCTCTTTCGGCAGGGTCATGTTGGTAAAACACAAAGGAACAGAGCAGTTCTTCGCCATGAAAGTCCTGGATAAACAAAAGGTGGTAAAATTGAAGCAAATAGAACACACACTAAACGAGAAGAGAATACTACAGGCAGTATCGTTCCCCTTCCTCGTCAGACTGGAATATTCCTTCAAGGATAATTCCAATTTGTATATGGTGATGGAGTATGTACCGGGTGGTGAGATGTTTTCACATCTAAGAAGAATCGGCAGGTTCAGTGAACCACATGCGCGGTTTTACGCAGCACAGATAGTCCTGACCTTTGAGTACCTCCACTCGCTAGACCTCATCTACAGAGACTTGAAGCCTGAGAACCTGCTGATCGATCAGCACGGATACATCCAGGTCACTGACTTTGGGTTTGCAAAAAGAGTGAAGGGCAGAACCTGGACGTTGTGTGGAACCCCAGAGTACCTGGCACCAGAAATCATTCTTAGCAAGGGGTACAACAAAGCTGTGGACTGGTGGGCACTGGGGGTGCTCATATATGAAATGGCTGCTGGGTATCCTCCATTCTTCGCAGACCAGCCCATTCAGATCTATGAGAAGATTGTGTCTGGAAAGGTACGATTTCCATCCCACTTTAGTTCCGATTTGAAAGACCTGCTGAGGAATTTGCTTCAGGTCGATCTGACGAAGCGGTACGGCAACCTCAAGAACGGCGTCAATGACATTAAAAACCACAAATGGTTTGCTACAACAGACTGGATTGCCATCTACGAGAGGAAGGTGGAAGCTCCATTCATACCAAAGTGCAGAGGCCCCGGAGATACGAGCAACTTCGACGACTACGAGGAGGAGGACATCCGCGTATCTGTTACAGAAAAATGCGCGAAAGAATTCACAGAGTTTTAGTAGTGTGGACATATCAGAGCTATacgtatacgtatatatacgtatatatacgtatatatatatatatatatataatacgaGTGTGGGACTGTGTGCGTGTGGATgcgtgtgtgggtgtgagtgtgtgggtgtgggtgtgtgtgtgtatatatcacACAACAGACAAAATAAGGAGGGGATCTTTGCACTCTGAAGACACAGAGACGGAGCAGAGACCACATCACCAAACAAAGTTCCTGCATAGTTCCTTCATTCCATCTGCTCAACCGGGCCCTCGTGCTTCGACAGCGCTTTTCTCGTTACGCCACGCAACACTCGTCCTGCATTTTACTCGTTTTCTCTTCTGTTGTTTTACTTTGACAACGTTGGGCATTTGTTGTCTCGGATGTCATTTCCCGTGTTTTTGTtaaggtcaaaaaaaaaaaaaaaaagggaacgTTTTTGGACGGTGTTTTTAAGCATAGAATTTAAGCAAGAAATTCAAAGGC
>XM_007240016.3
CTGTAGCCGGAGCAAGATATCAGCTTTACTGTAATCAGGGACAGCtgggggcagagagagagagaaagagagatagagagagagacaagcagggaaagaggagagagaggggaacaGGGGGCTGTAGTCCAAATAACACATCCCACCCCTCCCTGTCTCGGTCCGCTTTCTGCGGGGCAGGTTAATCTGCAGCAGCAGTCTGTGATACTGACGGCTGGAGGGGAGAGTTACAGAGCTACCTACCCGAACAAGCGCGGAGGGACCACGGCAGAGGATCCAGAGAGTGGACGGCTGGACGGCTGACTCGTCTTCTTGGTTCTTGTCAGCTTCtccgtgcgtgtgtgtgtgagagagtgagtgtgtgtgtatgagtgagtgagagaaaaagagtgtgtttgtgtgtttgttgctcACGATGGGAAACGCTGCGGCCGCCAAAAAGGGCAACGAGCTGGAGAGCGtaAAAGAGTTTTTAGCCAAAGCCAAAGAAGATTTCCTCAGAAAATGGGAATGTCCACCACAGAGCACCACTACTCTAGATGACTTTGAGAGACTGAAGACTCTCGGCACAGGCTCTTTCGGCAGGGTCATGTTGGTAAAACACAAAGGAACAGAGCAGTTCTTCGCCATGAAAGTCCTGGATAAACAAAAGGTGGTAAAATTGAAGCAAATAGAACACACACTAAACGAGAAGAGAATACTACAGGCAGTATCGTTCCCCTTCCTCGTCAGACTGGAATATTCCTTCAAGGATAATTCCAATTTGTATATGGTGATGGAGTATGTACCGGGTGGTGAGATGTTTTCACATCTAAGAAGAATCGGCAGGTTCAGTGAACCACATGCGCGGTTTTACGCAGCACAGATAGTCCTGACCTTTGAGTACCTCCACTCGCTAGACCTCATCTACAGAGACTTGAAGCCTGAGAACCTGCTGATCGATCAGCACGGATACATCCAGGTCACTGACTTTGGGTTTGCAAAAAGAGTGAAGGGCAGAACCTGGACGTTGTGTGGAACCCCAGAGTACCTGGCACCAGAAATCATTCTTAGCAAGGGGTACAACAAAGCTGTGGACTGGTGGGCACTGGGGGTGCTCATATATGAAATGGCTGCTGGGTATCCTCCATTCTTCGCAGACCAGCCCATTCAGATCTATGAGAAGATTGTGTCTGGAAAGGTACGATTTCCATCCCACTTTAGTTCCGATTTGAAAGACCTGCTGAGGAATTTGCTTCAGGTCGATCTGACGAAGCGGTACGGCAACCTCAAGAACGGCGTCAATGACATTAAAAACCACAAATGGTTTGCTACAACAGACTGGATTGCCATCTACGAGAGGAAGGTGGAAGCTCCATTCATACCAAAGTGCAGAGGCCCCGGAGATACGAGCAACTTCGACGACTACGAGGAGGAGGACATCCGCGTATCTGTTACAGAAAAATGCGCGAAAGAATTCACAGAGTTTTAGTAGTGTGGACATATCAGAGCTATacgtatacgtatatatacgtatatatacgtatatatatatatatatatataatacgaGTGTGGGACTGTGTGCGTGTGGATgcgtgtgtgggtgtgagtgtgtgggtgtgggtgtgtgtgtgtatatatcacACAACAGACAAAATAAGGAGGGGATCTTTGCACTCTGAAGACACAGAGACGGAGCAGAGACCACATCACCAAACAAAGTTCCTGCATAGTTCCTTCATTCCATCTGCTCAACCGGGCCCTCGTGCTTCGACAGCGCTTTTCTCGTTACGCCACGCAACACTCGTCCTGCATTTTACTCGTTTTCTCTTCTGTTGTTTTACTTTGACAACGTTGGGCATTTGTTGTCTCGGATGTCATTTCCCGTGTTTTTGTtaaggtcaaaaaaaaaaaaaaaaagggaacgTTTTTGGACGGTGTTTTTAAGCATAGAATTTAAGCAAGAAATTCAAAGGC

Function

NR:

description
cAMP-dependent protein kinase catalytic subunit beta isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04345 PKA; protein kinase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240015.2 True 1970 mRNA 0.47 11 18794903 18816397
XM_007240016.3 False 1959 mRNA 0.47 10 18794905 18816397

Neighbor

gene id symbol gene type direction distance location
LOC103034870 NA coding upstream 9545 18753807 ~ 18785358 (+)
LOC111194332 NA coding upstream 1490812 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1790099 16994339 ~ 17004804 (+)
efcab14 efcab14,LOC106569140 coding upstream 1854535 16927428 ~ 16940368 (+)
LOC103044680 NA coding upstream 3295398 15481787 ~ 15499505 (+)
exosc4 exosc4,exos4 coding downstream 5021 18821418 ~ 18826143 (+)
LOC111188235 NA coding downstream 114482 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 153489 18969886 ~ 18987441 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding downstream 278369 19094766 ~ 19119530 (+)
LOC111194335 NA coding downstream 609597 19425994 ~ 19431174 (+)
G142365 NA non-coding upstream 29200 18764058 ~ 18765703 (+)
G142360 NA non-coding upstream 79107 18715579 ~ 18715796 (+)
G142359 NA non-coding upstream 82488 18709438 ~ 18712415 (+)
G142344 NA non-coding upstream 103944 18615188 ~ 18690959 (+)
G142348 NA non-coding upstream 160493 18633047 ~ 18634410 (+)
G142372 NA non-coding downstream 10731 18827128 ~ 18827985 (+)
G142371 NA non-coding downstream 11950 18828347 ~ 18831508 (+)
G142377 NA non-coding downstream 37003 18853400 ~ 18854020 (+)
G142380 NA non-coding downstream 43954 18860351 ~ 18860741 (+)
G142382 NA non-coding downstream 47794 18864191 ~ 18870899 (+)
G142166 LOC108436878 other upstream 1590410 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 1721419 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1809608 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1826953 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 3392999 15385616 ~ 15401904 (+)
G142378 gpaa1 other downstream 39839 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 49053 18865450 ~ 18870317 (+)
G142620 NA other downstream 919909 19736306 ~ 19868292 (+)
rnf138 NA other downstream 1386251 20202648 ~ 20220149 (+)
G142820 NA other downstream 1966186 20782583 ~ 20790122 (+)

Expression


Co-expression Network