exosc4 (exosc4,exos4)


Basic Information

Item Value
gene id exosc4
gene name exosc4,exos4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18821418 ~ 18826143 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240018.2
GTCGGTGTTTTGGGCTGTGCGGGGACCCGTAGTGCGGGAACACGTGTTGTGTGTGCGGGAGTGATCATGGCGGGTCTGGAGCTGCTGTCGGATCAGGGGTACCGGCTGGACGGGCGCAGGGCGGCGGAGCTGCGGAAGCTGCAGGCCCGGATGGGGGTGTTCGCTCAGGCGGACGGGTCGGCCTACCTGGAGCAGGGAAACACCAAGGCGCTGGCGGTGGTGTACGGCCCGCACGAGGTCAGAGGGTCCCGCAGCAGGACCCTGCACGACCGCGCCGTCATCAACTGCCAGTACAGCATGGCCACGTTCAGCACTGCGGAGAGGAAGCGCCGGCCGCACGGCGACCGCAAGTCCAGTGAGATGAGTCTCCATCTGAAACAGACCTTCGAGGCTGCTGTCCTCACCCAGCTCTACCCACGCTCCCAGATCGACATCTACGTTAAAATCCTGCAGTCGGACGGTGGGAACTACAGTGCGTGTGTGAACGCCGCCACTCTGGCCCTGGTGGACGCGGGGATCCCCATGCGGGACTATGTGTGCGCGTGCACCGCGGGCTTCGTGGAGGACACGCCGCTGGCGGACCTGTGCCACGCGGAGGAGAGCGGGGGCGGCACCACGCTGGCCCTGGCTCTGCTGCCCCGCAGCGAGAGCATCGCCCTGGTGCAGATGGACGCTCGGCTCCACCAGGACCATTTGGACCCGCTTATGGAGGCAGCGATGACCGCCTGTAAGGGCCTCAGTAAAGTGCTGGACAGTGTGGTGCGGCAGCATCTGCAAGAAGTGTCTGTGCAGACCAGAGAGTAGAGAGTCTTCCTGAATGCCATCTTAAatacactgtatggacaaaagtattgggacacctcctCGTttatgtttcttctgaaatcaaagatgcggatttcatatttcagcaggacttggcacactacacacactgccaaaagtaccatttgGTCTTACCTACTATtcaaatttacagttttttctttctttttttattgtctgtaagccataattatcaacaataaaagaaataaacgcttaaaatagattactctgtgtgtaatacatctatatagtttgagttttacattttcaaatgaattactgaaataaagtaacttttcaaaaaatattgtatttttttgagatgcactagtaatattaatttgataatgtttttgtgtttttgtgcagtCTCAGACTGTCAACTGTGTGTCTGATACAAACTAGGCTGAGGTTGGATCTTGTACAGGAAAAAAGAACCCCTtcaaatttacagaaaaaacatttacattgtgttaaaaattaatgataattggaaaaaaagaaaagccaaaaactgacttggaataaaatgtACCTACATTGACTTCAATTGAAAGAAGAttcctctctcctgtaaagtttccattttgtagatatattttttcagtaataaatgatgaaacaaa

Function

symbol description
exosc4 Predicted to enable exonuclease activity. Predicted to be involved in RNA metabolic process. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; pectoral fin bud; and segmental plate. Orthologous to human EXOSC4 (exosome component 4).

NR:

description
exosome complex component RRP41

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004527 exonuclease activity molecular_function

KEGG:

id description
K11600 RRP41, EXOSC4, SKI6; exosome complex component RRP41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240018.2 True 1454 mRNA 0.50 3 18821418 18826143

Neighbor

gene id symbol gene type direction distance location
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding upstream 5021 18794903 ~ 18816397 (+)
LOC103034870 NA coding upstream 36060 18753807 ~ 18785358 (+)
LOC111194332 NA coding upstream 1517327 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1816614 16994339 ~ 17004804 (+)
efcab14 efcab14,LOC106569140 coding upstream 1881050 16927428 ~ 16940368 (+)
LOC111188235 NA coding downstream 104736 18930879 ~ 18932145 (+)
LOC103047721 NA coding downstream 143743 18969886 ~ 18987441 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding downstream 268623 19094766 ~ 19119530 (+)
LOC111194335 NA coding downstream 599851 19425994 ~ 19431174 (+)
ripk1 NA coding downstream 1262153 20088296 ~ 20115213 (+)
G142369 NA non-coding upstream 8036 18812978 ~ 18813382 (+)
G142368 NA non-coding upstream 11937 18808877 ~ 18809481 (+)
G142365 NA non-coding upstream 55715 18764058 ~ 18765703 (+)
G142360 NA non-coding upstream 105622 18715579 ~ 18715796 (+)
G142359 NA non-coding upstream 109003 18709438 ~ 18712415 (+)
G142372 NA non-coding downstream 985 18827128 ~ 18827985 (+)
G142371 NA non-coding downstream 2204 18828347 ~ 18831508 (+)
G142377 NA non-coding downstream 27257 18853400 ~ 18854020 (+)
G142380 NA non-coding downstream 34208 18860351 ~ 18860741 (+)
G142382 NA non-coding downstream 38048 18864191 ~ 18870899 (+)
G142166 LOC108436878 other upstream 1616925 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 1747934 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1836123 16972202 ~ 16985295 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other upstream 1853468 16948382 ~ 16967950 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 3419514 15385616 ~ 15401904 (+)
G142378 gpaa1 other downstream 30093 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other downstream 39307 18865450 ~ 18870317 (+)
G142620 NA other downstream 910163 19736306 ~ 19868292 (+)
rnf138 NA other downstream 1376505 20202648 ~ 20220149 (+)
G142820 NA other downstream 1956440 20782583 ~ 20790122 (+)

Expression


Co-expression Network