LOC103039256 (LOC103039256,LOC108436134,LOC108267332)


Basic Information

Item Value
gene id LOC103039256
gene name LOC103039256,LOC108436134,LOC108267332
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21819528 ~ 21839338 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240031.3
CGCTCTGCAGGCTCCACGCTCCCATCCAGTCCTGCTCGCTCGCGCTCACACACAGACTCGCTCTCTCAGCAccgcggcggcggcggcggagaAGTTTCCCGCGCAAACAACTGGCACGCGCGAGCAGCGCCTGTTGCTACAGCACAGAGGAGCGACACTGAAAACTTGAACTCTCAGAACCGTCCTCCATCCTTGagtttctcctcctctctcacacTCCTGGATTCAAACATGGATTCCAACCTGGTGGAAATACTTAAAGGAGACAAGTGCCTTTCCACAAACGACTGTGAGTTTAACTCTTCCCTACCTGGAGACCCTGAGCTCAGGAACCTGACCCCCAGCCCTGGCTGGAACCAAGAGTCCGAGCCCCTGTCCTTCCTCAGCCCAGCCATCACAGCCGTCTACTCTGTGGTGTTTGTGGTTGGACTGGTGGGAAACTGTCTCGTCATGTATGTCATTATCAGATACACCAAAATGAAGACTGCAACCAACATCTACATCTTCAACTTGGCCTTGGCTGATGCTCTGGTTACCACCACAATGCCGTTTCAAAGTGCAGACTATCTGCTGAACACCTGGCCATTTGGTGAAGTTGTATGCAAGGTCTTCATCTCTATCGACTACTACAACATGTTCACCAGTATTTTCACACTAACCATGATGAGTGTCGATCGTTATGTGGCCGTGTGTCATCCAGTCAAAGCGCTGGACTTCCGTACTCCACTCATGGCAAAATGCATTAACGTGGGTATCTGGGTGCTCTCTTCAGCTGCGGGAGTGCCAGCCATGGTGCTGGGAAGCACACAGACCAATAATGGCACCACAGAGTGTGCCCTGCAGTTCCCTGAACCGTACGAGTACTGGGACACCCTGATGAAGATCTGTGTCTTCGTCTTTGGTTTTGTCATCCCTGTCCTCATCATCAGCGTCTGCTACTCCCTCATGCTCCTGCGCCTCCGCAGTGTCCGCTTGCTTTCTGGTTCCAGAGAGAAAGACCGCAACCTTCGCCGCATCACGCGCTTGGTGCTGGTGGTTGTGGCAGCTTTCATCATCTGCTGGACTCCCATTCATATCTTCATTTTGCTCAAAGCTATAGTGTCCATTCCTGAGACCACGGCCGTGATGGCTGCATACTTTCTCTGTGTTGCTCTTGGATACACCAACAGCAGCCTCAACCCCATTCTCTACGCATTTCTGGACGAGAATTTTAAGCGTTGCTTTAAGGACTTCTGCCTGCCGACGAGGGGAAGGGGGGATAGGGGTCTGGTTGGGAACAGGGGAGGGAGGAGTGCGTGCAGGCAGCTCCCACAGGCTGCAGAGAGCCCCCCAAGGACAGCAAAGCCAGCATGACTAGGCATGGAACTGTCCTCCATCACACAGACTGGGAAGGAGGACTCAAACACTCTTGGACTGACGCAGGTGTCGTCAGCCCTCTGACCACAGTGCAGCCGCCAGACGATATTGGTGTGACTGACTAGGAAAACCTTCCGTCTCTCATGAGAATTGTGCGAGACATGTTACCTAACATTAGATTCAGACTAGTGTAATGGTGTCAGAAGGAGATGAAGTCTGGTGAGAATTCTATCTGGGGCTGTCAGTATTGGTTTCGCTTTTTTTGTAAACGTACTGCATATTTACATGTCTTTTGTCACTGTTATATAAAATCTGAAAACATCATTATTTTTTGCTCCATTTGATAACAGAAGCTCCCTTTTTTACACTGTGTGAAAAATTTCATGATTACAGACCACTAGAGCAAACTTGTGAAGAATCAGGAGATAAAAGATTTTCGTATGACAGTGACAATGTAAATCTCTGATCTCACAACACAATTATATTTCCTtagataataaatgaaatctcaaatgtttataaatgaaatCTCAAATGGCAACATATTCAGAATGTTTTAAATCCTATATAATggagtttaattatttatgttttattttatatttttttacccacTTTTCCCAGCAAAATCTTTTGAGTTTGTTGATTTTCTTAGTCCATCTTGCATCTAGTCTGTTTTAAGATGTACCCAGAGATTTTAATGATGTCTAAGCCAGGAGAATGCCAGGagcagtgattaaaaaaaaatatggatagGTCTAGGCCTCTTCTGGCTGGTAACAGTATGATGTGAAGCTTTGTCCCCATCCCCATATGTTTTAATAACAAAACATCTCTTTTATCTACTCTAAACTCCTTTAAACAAATCTTCAGCATCTAATTCCAGCAGTTATATCTTCCTAGGATTTCCCTATGTATATTTTGTCccttaaaaaatagattttaaagttATTCTGTTGTATTGTAGATATAGTTTAATAACACACTTGTCAGCACTTCATTTCCAGTTCTACTTAGGAATTAAGTGATTCATAGCCTTGGCTGGAAAAGACCACCTTCAGAACCTGTATTGTGCACTTCTTAGCTGAGTTGTAGTGGAACTTACATCAGCTgcacttttactgttaaaaacaaaaaaacacacaaaaatgacCCTTACCAGACCTGGTGTAAAAATCCACTATGAGTAGGTGAGTCTGTCTCCACATCTGGTCTCCACTGCTTGGGTGGCACATTTGACAACAAAGTAGACAACAAAGATATGTTGGGCTTGGAACTACAATGTCCATTGTTTTACAGTCATTTCAGCTTGTTATTTTGCTGATTGTTTGGTTACTTGTTGATTTGCTTCCAGaattgattattatttaatgaaatCCATTTTATCATCTACCTGTGAAGTGTATTTTGGTGCCTCTAGATGTCACACAAGCACAAAGCAGAATACATTACATCCACTCCCAAGATTAACGTGATAGTGAATTTTGTCAAAAATACCAGATCTACAGCCAACTGCTTAGAGAAGCACATGGTTGTTGAGTTTTAGCACAAGGTTTAATATCAGCTGACAATTGTTGATCAACAAGTCAACTAAGCACTAATGTGAGTTATTTCAGCTCTGAGACTTGTCCATATTTTGTGTACTATTCTGAGGTCTTCTTaagttcaaaacaaaaaaatgagcacATATTTTATTGAATAATATTTTCCATTTGATCCTTATTGATTCCGGAATCTCTGTggttaaatcacttttttacaccattaatttCTTTTAATTGTGTCTGCGTTGCTGTTTCTGGAGACCTTGACCTTGAGTTACCTCTAAACATAAAAGTCAATCCAGCCCTTTGGCTTCTCATTTATTTCCATTCAGAGACTCACTGAAGCATACGTGTATCATTAGGTGATTTATTGATGTGGTTTGGGGGAAAGGGTTTTGCATTCTGAACACCTATACGTTTTACCCTTTACATATTTTCCAATAAATTGATGAGTCTGGTGTAAGTTTCGTTTAAAGTGTTGAACTGTTATAATGTATTTCTCAGGGATTGTAAGTTGTTTTCTAATCAACATAAATGCCTTTGTGTATTGTCTTTCTGTTAGCTGTGGTGGATTCTATTGTTAATTGATTTTCTCCTATAACTGTAACTCTTACTATAAGGGTCGCCAAGTCGCTTTCAGAATCCTGGCAATCATATAAGTTGAATGTCTTGTGTTTTGTTTGGGGTTTACTGATGTACTCATCGGCATATATCTATAATCTCCCTTTGTTTTTACATCTGTTTTTAAGCAGGAATTTCTGTCTATCAGTTTTCTGATATATGAAGAATTCATTTGCAAAACAGATATGTGTTATCCTTTAAACAttcatttatctgtttttgtaaattaacTCTTCATGTATAACTGTAGGTGTATTagcaatgtgtgtgtatgtggttatATTGCAGTCCTGCactgtttctgtctttctgtattATATACAGATATAAGTGCACTTTAAAGGCCAGGATCTATGACCCCTCCAGCATAGTTTTGCCGATAACAGAAAGCACAACATGCATCAAAGCACATACTggacattaatattttttaacagtaaactGGTAATCACTGA

Function

NR:

description
delta-type opioid receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0042277 peptide binding molecular_function
GO:0004985 opioid receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240031.3 True 3976 mRNA 0.41 4 21819528 21839338

Neighbor

gene id symbol gene type direction distance location
LOC111194247 NA coding upstream 72043 21740241 ~ 21747485 (+)
lypla1 lypla1,lypa1 coding upstream 95403 21718321 ~ 21724125 (+)
LOC103047292 tmem68,LOC107584594 coding upstream 186955 21624393 ~ 21632573 (+)
rps20 rps20 coding upstream 221088 21592040 ~ 21598440 (+)
LOC103045570 sdr16c5,LOC108436143 coding upstream 257478 21530341 ~ 21562050 (+)
chmp5 chmp5,chmp5b,LOC108436133 coding downstream 10927 21850265 ~ 21856543 (+)
LOC103040396 myom1 coding downstream 40772 21880110 ~ 21938486 (+)
malrd1 NA coding downstream 118682 21958020 ~ 22107652 (+)
LOC103046886 plxdc2,LOC107724400,LOC107684879,LOC107659453,LOC107598695 coding downstream 283568 22122906 ~ 22356385 (+)
nfx1 nfx1,LOC107742139,LOC108268165 coding downstream 521299 22360637 ~ 22392511 (+)
G143172 mrpl15 non-coding upstream 104353 21711366 ~ 21715175 (+)
G143127 NA non-coding upstream 117583 21700822 ~ 21701945 (+)
LOC111194179 NA non-coding upstream 160908 21655779 ~ 21658620 (+)
G143114 NA non-coding upstream 176670 21634242 ~ 21642858 (+)
G143112 NA non-coding upstream 236862 21581424 ~ 21582666 (+)
G143189 NA non-coding downstream 15789 21855127 ~ 21956720 (+)
G143282 NA non-coding downstream 545999 22385337 ~ 22385673 (+)
G143283 NA non-coding downstream 639328 22478666 ~ 22566331 (+)
G143334 NA non-coding downstream 730686 22570024 ~ 22576268 (+)
G143336 NA non-coding downstream 732375 22571713 ~ 22572857 (+)
G143122 LOC108436138 other upstream 172823 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 207846 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 239804 21569082 ~ 21579724 (+)
G142820 NA other upstream 1029406 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1599379 20202648 ~ 20220149 (+)
G143324 NA other downstream 696347 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1545830 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 1564350 23403688 ~ 23406894 (+)
G143836 NA other downstream 1988610 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 2597041 24436379 ~ 24602402 (+)

Expression


Co-expression Network