ripk1


Basic Information

Item Value
gene id ripk1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20088296 ~ 20115213 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240883.3
GGTTTTGGTACTGGTGCTggttgttgagtgtgtgttagtaagTGTTTTGTGAAGGTTTGGTTGTGTCAAAGGTGTTAGGATATTACTATTAAGTTGATTACGAAGGTGTTTGGTTTGTGTTAGTAGGTGTTTGGTGGAGGTTTGATTGTGTCAAGAAGTGTTCAGATATTGttcatgtttgtgttttgtgttttgaagGTTTGTTCAGTGTCAGAAGTGTAAGGACATTCTTAAAGTTGGTTCAGATGGTTTTGGTGTTGAATTTAGGTGTTTGATAGAGGTTTTGGCAGTGTCAAAAGTTTTAGGACATTTCTAAAGTCGATTCAGTTCAAgttttgctgttgtgtttaggtGTTGGAGGATGTGTTAGTTGGTGTTAGGTGGAGTTGTTTGCAGTGTCAGAAGTCTTAGGACATAGCTAAAATTGGTTCAGTAGGTGTTACGTGTTGGTTTTAGGCATTAGGCTGTGGTAATAAGTGTTTGGTGGAAGTAAGGTCTTGTCAGAAATGTTAGGACTGAATGTCTGAAGTTGGTTCCGAAGGTGTTTGTGTTGGTTAAAGAGTCCTTAGTTGTTGTGGCTTGTGTTAGTAGGTGTTTTGTGGAGGCTTGGTCGTGTGATACTGGTCCTGGTTGTTGGATATGTGTTAGTCGGTGTTTGGTGGAGGTATTGATTGTGTCAGAAGTGTTAGTATATTACTAAAGTTGGTTTAGAAGGCGTTTGGTTTATACTGTTGGTGTTTTGTGGAGGTTTGTCTGTGTCAGAAGTGTTAGTATATTACTAAAGTTGGTTTAGAAGGCTTTTGGTGGAGATTTGTTTGTGTCGGAAGTGTTAGGACACTCCTAAAGTTGGTTTAGAGGGTctttgtgctgtgtgtgttagcagtgtAAATCACTTCCTCAGTGGTGTCAGGTTACACAACTCCTCAGCCACAGCATGGCTACAGGATCGAGCTTGGACATTTACATGAAGTCCTCGGACTTGATCAGGAAGAAGCGGCTGGACTATGGAGGCTTTGGAGAGGTTTACCTGTGCTACCACAAAACCCTGGGCCAGGTGGTGCTGAAGACCGTGTACACGGGACCACCTCGAAATGAGCAGAAGCCGTCTCTGCTGGAAGAGGGCAGTCTGATGAGCCGGCTGAACCACGAGCGCGTGGTGAAGCTGCTGGGGGTGATTCTGGAGGATGGAGATTACTCTCTGGTGATGGAGCTGATTCCTCGAGGCAATCTGCTGGCCATGCTGGAGAGGGTCAGTGTTCCCATATCCATCAAAGGAAGGATCATTCTGGAGATCTTGGAGGGAATGGTTTATCTAACCAACAACCAAGTCATTCACAAGGATCTGAAGCCGGAGAACATCTTAGTGGACGAGCATTTCCACGTGAAGattgcAGATCTTGGTCTGGCCACTCATCAGACGTGGAGTAAGCTGACCCGGGACGAGTCCCGCAGACAGAGCCGGCTGGGTGTGAACAGGAAGTCGTCGGTGCGAGCAGCCGGGACGCTGTGCTACATGGCTCCCGAACACCTGGAGAGCGTTCACACTCGCTCTAGTGAAAAATCCGACGTCTACAGCTTCGCCATCGTCGTCTGGGTCGTCCTCACCAGCCAGGAACCGTACGAGAatgcAAGAAGTGAAGATCAGATCTGTCAGTGTGTGCGTCAGGGAGACCGCCCCGATGAGCAGCTCATTCCAGATGATGCACCGCCAGAGATCACCCGCCTCATGAAAGCCTGCTGGGACCAGGACCCTCAGAAACGACCCACCTTTAAAGaAAGCTATAATTCATTCTTGCCAGTCTACAGGGAGAAGCTGGAGACGGATGTGGAGAAGGATCTGCATGGTCTAATGGATTTATATGAAGGACCTTCAGATCTGGTAGAGAAGATGAAGGCCCTGTCAACGGAGCTGCCGCCGGCTAATGCAGGACTGGAGCCCCCATCCTATCCGCAGAGCACCAGAGACTCTCCCACCCCCCTGCGGAGTTCAGATCTGGGGCCGGTGGAGGCCAGCATCGAGGACCTCAGCCTGTTTTCAGCAGAGAGCCTTCAGGTGGACGCAGCTCCGTGCAGCCCGCCCAACCTGGACCAGAAACTAGCCCAGGAGTTCAACTACCACAAGTGGGGCAGCTACACCCGAACGGAGCCGCCCGACCTCAGCCCCTACAGCTACTCCACTCAGTCCTCGCAGGCCGTGGCCAATCACAGGCAGGCTGGAGATCTTCCCCAGCAGGTGTCCTCGGTCCAGTCTTGGACCAAACCCAGCCCTCAGCCGAGCGCTCCGGAGGAAGCCTGGATGCAGCCGTCAGTTCCAGGTCCTTTTGAGGGTCAGCACAGACCTCATTACGAGAATCAGATGTCCGGCCCGTATCCACATCATTACGACCCCTACCAGCGCCAGCACCCGCAGTTCAACCGCCTGCAGTCCTGGCCCGGGGTGGCACCGCACCCGATGTCCGAATCTACCCCTAAGGAATCATGCGCTGGTCTGCGTGTTAGCTCACCTGTAATAAGCCCACAGCCAGAAACAGGGCCATCACTGTACATCACTCAAGCCAGCGGGATCCAAATCGGGAACAACAACATGATGAACTTCCGTAATCCTGAAAGCTCTCTCAACTCCATGGCCAGTTCATCCCCCGTCAACAAGTGTAAAGAGCTGCTGCAGAAGTATGAGGACCACACTGTCACTAAGGATCAACTGGATCTGGTTCAGGAGAACGTGGGTTTGAAGTGGAAGGCCTGTGCCAGGAGACTGGACCTGACGCAGATGGAGATTGACGAAATCGAGCACGATTACGACCGCGACGGCCTGAGCGAGAAGGTCCATCAGATGCTGGAGCGCTGGAAGATGAAGGAGGGGTTTAGCGGCTGCACCGTGGGGAAACTGTGCCGAGCCCTGGAGAAATGTGGCAAAGGTGACGTGATCCTTAAGTTGCTGCTCAAATCTCAGGATAACACCGTTCTTTAAAACTCTACCAGCAGGAAATGTGGTTCATTAGTGCCTTAGGATGGAGATGTGGTcattagttgttgttttttttttttaagaaatatcggGGGTCTTTTGTTTCTGGCTTGTGTTGATCTGTTTTATGTACACTTATTACACAGATGTCCTACTCATTTGGTAAGACCCTTGTCTAAGACCaagccttcattgagtttaaaCATGGCGTAAAAAAGGACCAGAAGCAAAGAAGAAGAATCAGTTCGTCTAGTAAATCCATGTATTTTAATACCAAAGCTTTTACATTGCCATCAAATCACAGTACCGGGGACTTccagtggtccagcagactaagtgcttcagcatcagcagccggagtccgagagagccaAATTGGCCATGCTTCCTTTGAATGGTAGATGGTAGATGGTCCTCTCTTCTCATATAATTTCTTTAATAATGTTGATCAGATCAGAACTGGGATGCTGCACGTTCCTCCAAGCCACTGTTGGCTACCCAATGATGCGgatggaaaagaggcggagtctctGAGACTTCACAATGTATCACAATGTAGGAGGTGTGCGCTGGTGCTCTTTTCCCTTCTAGTGTTGGggtcattactagtgatggggggagttcATATGAATATGGATTGGGTATTAGTTTTTCCTGTACAGCACATCTAACTACACCTTTACACCTAACATTAGCTGGCTGGCTAACAGCTAACTAGATCACATTGGCTATATTATGCTAGCATCAGacttaccaaaaaaaaactgtgatcaaCACAACTTTTAGTTGACTGACGATTTAACTGTGactcagctactccatgtaataATACAGACAACTGGTCTGTTCCAGTCAATGCTGTCAATCACTCCATTCTTAAGTGTAGCTCCGCCTTCTTCCAGTAAAGCAGAATAAGGTTTCTAgcggaaaaaaatatatacagctctggaaacaattaagagaccacttcagtttctgaatcagtttctcatattttgctatttataggtacatgttttactaaaaatga
>XM_007240884.3
acccggaacacacacacacacacagcttcctCAGGAACTCAGAGGAATGTAGATCAGGGTGAGTGAAACACACagtctgattattattattattattattttacactttatgctgATTATATACCGAGATTTTACTACTGAACACCCGGCcggaggagcagcagcaggagaacATGAGCTTCAGCTAGAGTTACTGAAGATCCACAGCTACATTCAGATCTTCAGCCCGCCACAGCATGGCTACAGGATCGAGCTTGGACATTTACATGAAGTCCTCGGACTTGATCAGGAAGAAGCGGCTGGACTATGGAGGCTTTGGAGAGGTTTACCTGTGCTACCACAAAACCCTGGGCCAGGTGGTGCTGAAGACCGTGTACACGGGACCACCTCGAAATGAGCAGAAGCCGTCTCTGCTGGAAGAGGGCAGTCTGATGAGCCGGCTGAACCACGAGCGCGTGGTGAAGCTGCTGGGGGTGATTCTGGAGGATGGAGATTACTCTCTGGTGATGGAGCTGATTCCTCGAGGCAATCTGCTGGCCATGCTGGAGAGGGTCAGTGTTCCCATATCCATCAAAGGAAGGATCATTCTGGAGATCTTGGAGGGAATGGTTTATCTAACCAACAACCAAGTCATTCACAAGGATCTGAAGCCGGAGAACATCTTAGTGGACGAGCATTTCCACGTGAAGattgcAGATCTTGGTCTGGCCACTCATCAGACGTGGAGTAAGCTGACCCGGGACGAGTCCCGCAGACAGAGCCGGCTGGGTGTGAACAGGAAGTCGTCGGTGCGAGCAGCCGGGACGCTGTGCTACATGGCTCCCGAACACCTGGAGAGCGTTCACACTCGCTCTAGTGAAAAATCCGACGTCTACAGCTTCGCCATCGTCGTCTGGGTCGTCCTCACCAGCCAGGAACCGTACGAGAatgcAAGAAGTGAAGATCAGATCTGTCAGTGTGTGCGTCAGGGAGACCGCCCCGATGAGCAGCTCATTCCAGATGATGCACCGCCAGAGATCACCCGCCTCATGAAAGCCTGCTGGGACCAGGACCCTCAGAAACGACCCACCTTTAAAGaAAGCTATAATTCATTCTTGCCAGTCTACAGGGAGAAGCTGGAGACGGATGTGGAGAAGGATCTGCATGGTCTAATGGATTTATATGAAGGACCTTCAGATCTGGTAGAGAAGATGAAGGCCCTGTCAACGGAGCTGCCGCCGGCTAATGCAGGACTGGAGCCCCCATCCTATCCGCAGAGCACCAGAGACTCTCCCACCCCCCTGCGGAGTTCAGATCTGGGGCCGGTGGAGGCCAGCATCGAGGACCTCAGCCTGTTTTCAGCAGAGAGCCTTCAGGTGGACGCAGCTCCGTGCAGCCCGCCCAACCTGGACCAGAAACTAGCCCAGGAGTTCAACTACCACAAGTGGGGCAGCTACACCCGAACGGAGCCGCCCGACCTCAGCCCCTACAGCTACTCCACTCAGTCCTCGCAGGCCGTGGCCAATCACAGGCAGGCTGGAGATCTTCCCCAGCAGGTGTCCTCGGTCCAGTCTTGGACCAAACCCAGCCCTCAGCCGAGCGCTCCGGAGGAAGCCTGGATGCAGCCGTCAGTTCCAGGTCCTTTTGAGGGTCAGCACAGACCTCATTACGAGAATCAGATGTCCGGCCCGTATCCACATCATTACGACCCCTACCAGCGCCAGCACCCGCAGTTCAACCGCCTGCAGTCCTGGCCCGGGGTGGCACCGCACCCGATGTCCGAATCTACCCCTAAGGAATCATGCGCTGGTCTGCGTGTTAGCTCACCTGTAATAAGCCCACAGCCAGAAACAGGGCCATCACTGTACATCACTCAAGCCAGCGGGATCCAAATCGGGAACAACAACATGATGAACTTCCGTAATCCTGAAAGCTCTCTCAACTCCATGGCCAGTTCATCCCCCGTCAACAAGTGTAAAGAGCTGCTGCAGAAGTATGAGGACCACACTGTCACTAAGGATCAACTGGATCTGGTTCAGGAGAACGTGGGTTTGAAGTGGAAGGCCTGTGCCAGGAGACTGGACCTGACGCAGATGGAGATTGACGAAATCGAGCACGATTACGACCGCGACGGCCTGAGCGAGAAGGTCCATCAGATGCTGGAGCGCTGGAAGATGAAGGAGGGGTTTAGCGGCTGCACCGTGGGGAAACTGTGCCGAGCCCTGGAGAAATGTGGCAAAGGTGACGTGATCCTTAAGTTGCTGCTCAAATCTCAGGATAACACCGTTCTTTAAAACTCTACCAGCAGGAAATGTGGTTCATTAGTGCCTTAGGATGGAGATGTGGTcattagttgttgttttttttttttaagaaatatcggGGGTCTTTTGTTTCTGGCTTGTGTTGATCTGTTTTATGTACACTTATTACACAGATGTCCTACTCATTTGGTAAGACCCTTGTCTAAGACCaagccttcattgagtttaaaCATGGCGTAAAAAAGGACCAGAAGCAAAGAAGAAGAATCAGTTCGTCTAGTAAATCCATGTATTTTAATACCAAAGCTTTTACATTGCCATCAAATCACAGTACCGGGGACTTccagtggtccagcagactaagtgcttcagcatcagcagccggagtccgagagagccaAATTGGCCATGCTTCCTTTGAATGGTAGATGGTAGATGGTCCTCTCTTCTCATATAATTTCTTTAATAATGTTGATCAGATCAGAACTGGGATGCTGCACGTTCCTCCAAGCCACTGTTGGCTACCCAATGATGCGgatggaaaagaggcggagtctctGAGACTTCACAATGTATCACAATGTAGGAGGTGTGCGCTGGTGCTCTTTTCCCTTCTAGTGTTGGggtcattactagtgatggggggagttcATATGAATATGGATTGGGTATTAGTTTTTCCTGTACAGCACATCTAACTACACCTTTACACCTAACATTAGCTGGCTGGCTAACAGCTAACTAGATCACATTGGCTATATTATGCTAGCATCAGacttaccaaaaaaaaactgtgatcaaCACAACTTTTAGTTGACTGACGATTTAACTGTGactcagctactccatgtaataATACAGACAACTGGTCTGTTCCAGTCAATGCTGTCAATCACTCCATTCTTAAGTGTAGCTCCGCCTTCTTCCAGTAAAGCAGAATAAGGTTTCTAgcggaaaaaaatatatacagctctggaaacaattaagagaccacttcagtttctgaatcagtttctcatattttgctatttataggtacatgttttactaaaaatga

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0005515 protein binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K02861 RIPK1, RIP1; receptor-interacting serine/threonine-protein kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240883.3 True 3998 mRNA 0.48 11 20092660 20115213
XM_007240884.3 False 3300 mRNA 0.50 11 20088296 20115213

Neighbor

gene id symbol gene type direction distance location
LOC111194335 NA coding upstream 657122 19425994 ~ 19431174 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding upstream 968766 19094766 ~ 19119530 (+)
LOC103047721 NA coding upstream 1100855 18969886 ~ 18987441 (+)
LOC111188235 NA coding upstream 1156151 18930879 ~ 18932145 (+)
exosc4 exosc4,exos4 coding upstream 1262153 18821418 ~ 18826143 (+)
mep1b LOC108439312 coding downstream 108563 20223776 ~ 20245141 (+)
LOC111194338 LOC108440942,LOC108268057 coding downstream 441553 20556766 ~ 20574038 (+)
LOC111194337 adcy1 coding downstream 496282 20611495 ~ 20667477 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding downstream 600331 20715544 ~ 20774155 (+)
LOC111194340 NA coding downstream 688087 20803300 ~ 20812844 (+)
G142619 NA non-coding upstream 359325 19724445 ~ 19728971 (+)
G142614 NA non-coding upstream 392013 19693936 ~ 19696283 (+)
G142603 NA non-coding upstream 566408 19521677 ~ 19521888 (+)
G142458 NA non-coding upstream 655239 19432674 ~ 19433057 (+)
G142455 NA non-coding upstream 656158 19431431 ~ 19432138 (+)
G142610 NA non-coding downstream 1544 20116757 ~ 20117450 (+)
G142726 NA non-coding downstream 22913 20138126 ~ 20140399 (+)
G142765 NA non-coding downstream 283540 20398753 ~ 20414640 (+)
G142769 phactr1,LOC108239648,LOC107383912 non-coding downstream 294410 20409623 ~ 20434382 (+)
G142771 NA non-coding downstream 308209 20423422 ~ 20499753 (+)
G142620 NA other upstream 220004 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 1194787 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 1217979 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 2883803 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 3014812 17058294 ~ 17073484 (+)
rnf138 NA other downstream 87435 20202648 ~ 20220149 (+)
G142820 NA other downstream 667370 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 1453869 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 1483469 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 1530692 21645905 ~ 21646705 (+)

Expression


Co-expression Network