LOC103025043 (LOC108412585)


Basic Information

Item Value
gene id LOC103025043
gene name LOC108412585
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 35971343 ~ 35988863 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007242027.2
TACAAATGTAACCCAATGCTGACCGGAGCCCTGTCAGGGCCCTCTGCACAACCAATGGCGCTCATTTGGACACCTCACTTTTCTTATAGTAAAGATTTGGATTTATttcacagcaaaaaaacaatgcaatttTTGTGAGTATCTGTAGCATCTTGTGAATGTGGAGCCTAGTTCGCAATGATGGTGGCCTACAATTTTTTTCTGCATGGATGAGGATAACAAGCAGCTAATCCAAATGTACTGTATTCACTTTTGAAACGaGCTATGTGAGGACTGAAATGAAGACACCTCTGATGTGACAGTGAGTGGGATCCAGACTGTGCCAACCCACCCACTGCGCAGGCGAGTTGTGGCCTTGAGATGCAACGGAAGTTCCATGCCTTTTACAGCTTACCGCCAGAATGGACCAGCAGAAGACTCCACACCCCTAATCGATGTGTATCTTTTCCCCTCCAGTACAGCCATGTCTCAGTTTGCAGCAATAGGCCCCTCTGGGCCTCCCTGATCCTGCTTTACCTCCTTGTTTCCTTACCAACGGCTGCTTCATTCCGGGTTGGGGTGGTGGGACCGTGGTCTTGTGACCCCCTCTTTGCCAAGGCCTATCCCAGTGTGGCAGCACAACTGGCCGTCAGCCGTATTAACAGGGACCCCTCCCTCTGGCCTGGGGCCACGTTTGATTATGTGATCCTGGAGGAGGACTGTGAGACATCACATGCTCTTTCACGTTTCGTCGGGTACTACACCCGTGCATCCAGCTTCATCGGTCCCGTCAACCCTGGCTACTGTGACATGGTGTCCCTGCTGGGGAAGAACTGGAATAAAGCAGTGTTCAGCTGGTCGTGTCTTAGCTATGAACTGGACAACCTCCGTAGGCACCCCACTTTTGCCCGCACCATGCCCCTGCCCTCACTGGTGCTGCTGCATTTCATGCgccacttccgctgggctcacGTGGGCATCATTTCTTCAAACGAGGACATTTGGATAGAGACCGGCCATGAGCTGGCCAGGGCTTTATGCAGCCACGGCATGCCTGTTGGGATAGTGGTGTCCACTGGAAAGGACTCGGTCAGCATGTTAGATGCCCTGACCAAGGTCAAGAAAGTTAAGGACCTTCGATTGGTCATCCTCTGCATGCACTCAGTCTTAATAGGGGGTAAGGTTCAGAAGCTGCTCCTAGAGATGGCCCATGACATGCAGATGACATACGGCTCCCTAGTGTTTGTGCCCTATGATACCCTCCTCTACAGCCTGCCCTACCACCACCTGCACCAGCCTGATCTACTACACAACAACAGCAAACTGCTGAAGGCCTATGATGCTGTGCTCACCATCACTGTGGAGTCTCCAGAACAGCACTCTTTCTACCATGCCTTCACTGCGGCACAAAAGACTGGAGAACTTCCTTTCAGCCTCCAACCACAGCAGGTCTCTCCACTGTTTGGCACCATCTACTCCTCCATACTGCTTGTGGCCCATGCCATGCGGGGTGTGCAGACCTCAGGAAAGTGGATGTATGGGGGGAGCCTGGCCCAGCATGCCCGAAATCTGTCTTTCAAAGGCTTTAGCCACCCCATTCGCACTTCACCCACTGGCTCAGGTCTGCTGGATTATGTTGTGCTGGACACAGATGGAGTTTCATCTGAACTGAGGCCTTCCTACCGCATAGAGATGGAGACAGATACGGTGCACTTTCTTGGCCGCTCAATTCACTTTCCAGCATGGGTTCTGCCCAAGACGGACTCCAGCTGCTGGTTCACAGAGGGGGAGATTTGTAGTGGAGGTATGGATCTTTTCCAATTGGTTATTATCTCTCTTTGTATCATTCTTCTGGTCTTCTTCTGTTCTGCATGTATATACTTAATAAGGCGACGGATCATTCAGATCCGAGTAGTTCGGAATGCAGATAAAATCTTACTAACCTTAGAAGATATTGTCTTCATCATCCCATCATTAAGTAACAAGAAGATGAGTTTCGATGACAGCAGGACCAGTGAAACCAGAAAAAGCTCCTCAGAGCGCAGCCTTATTTCTCCAATCTCAAGTCAGTCGCCAGCTACCCATGAAAACACGAATGTCGCTGTTTATGAGGGTGATTGGGCTTGGCTGAAAAGATTTCCCGATGGAACCTTTCAGGGCATCAACCCCAGCACCACTGAACTATTTGAACTGATGAGGGATATAAGGCACGAGAATGTGAACCCCTTCATGGGTCTCTTCCATGACTGTGGAGTCTTCGCCATTGTGACGGAGTTCTGCTCCCGAGGGAGCCTGGAAGACCTGCTGCTAAATGATGATGTGAAGCTGGACTGGATGTTTAAGTCTTCACTGCTGCTGGACCTCATTAAGGGTATGAAGTACCTCCACCACAGGAATGTTTGTCATGGAAGGCTGAAATCCAGGAACTGCTTGGTTGATGGACGTTTTGTACTCAAAGTGACCGACTATGCTTACAATAAATTGTTGGAAGCCCAGAAGTTCCAGTATGTTGAGCCATCGGCtgaggAGCTGCTGTGGACAGCTCCTGAGCTCTTACGAGGTTCATTCCCAGGGCAGAATGGCACTTTCCCAGGGGACGTGTACAGCTTCTCTATCGTCATGCAGGAAGTGGTGGCTCGAGGGCCTCCTTTCTGCATGTTAGATTTATCTGCTGAGGAAATACTCCAGAAAATCCGGAAGCCTCCTCCGTTATGTCGTCCCACAGTATATCCAGATCATGCTCCAGTAGAGTGCATCCAGCTGATGAAGCAATGCTGGAATGAGCAGCCTGAGAATAGACCCACCTTTGAGGAAATTTTTGATCAGTTTAAGAACATAAATAAAGGGAAGAAAACCAACATAATCGACTCCATGCTGCGAATGCTGGAGCAGTACTCCTCTAACCTGGAGGAGCTGATTAGGGAGAGGACAGAGGAGCTGGAGGttgagaaacagaagacagagaaGCTGCTCACACAGATGCTGCCACCGTCAGTAGCTGAGGCCTTGAAACTGGGAACCACAGTGGAACCCGAGTACTATGAGTGCGTCACCATCTACTTCAGTGATATTGTTGGCTTCACAACCATTTCAGCCAACAGTGAGCCCATCGAGGTGGTTGACCTTCTAAATGACCTCTACTCAACTTTTGATGAAATCATCGCGAACCACGATGTGTATAAGGTTGAGACCATAGGTGATGCCTACATGGTAGCATCAGGTTTACCAGTGCCCAATGGGAACCGGCATGCAGCTGAGATTGCCAACATGGCACTGGACATCCTCAGTGCAGTGGGAACATTTAAGATGCGACACATGCCTGACGTCCCAGTCCGAATCCGAATAGGAATTCATACAGGTTCTTGTGTAGCTGGTGTCGTGGGCTTGACTATGCCAAGATACTGCCTGTTTGGAGATACAGTGAACACAGCCTCTAGAATGGAAGCTACAGGGACGCCACACAGGATACATATTCACTCCAGTACTGTCCAAATTCTGCGAGAGATGAAAGCTGGTTACAAGGTGCAGTTATGTGGCAGGACTGAAATAAAGGGAAAAGGCACAGAAGAGACATACTGGCTCATTGGACGGGATGGCTTCACCAAACCTTTACCCATCCCACCTGAGCTCAAGTCAGGGCGTGAGTCCAAGGACTTTAAAATGATGCTTCACAAGGCTGTGAGGAAGCTCTCGGCTGTGCGCCAGGTGACCCAGCTCACCATGGCCGATGAAGGCAACGTCATGATACACCATCACTGACGACCCTTCACCTGTGCCTTTTTGACTCGTGCACTGGGGACAGACATCAAGTGAAAGGAGTTTAATGAATTGTCCTTCCTTCGAACATGGAATGAGGACCTAATGAGCCTTCGTAAAGGTCTCGTCTGTAAAGTCTtcttcttattctctctctggaTGAACACCAGTCTCTCATGCTGGGATGGTCTATTTTCTTGCTGGATGCTCACAGATTCTGCTTGAAATTAATGGTAGAAGACACGCATTGGATGCCATGGTCTGTCCTCCTGGAATTCCTCCTTAAACTGTAATAAGCAGCAAGCTCATCACACGTCTAATCAAACCCCCTTAATAGTATATTCCAGAACTACCTCTCAGAAGCTTTGGGCTCAGTCTCAGGAAGTGCAGGGCTTAACCCTGTTCTCTGCACGGAAGGACTTCAGGCCTACACTGAATTTGAAGCACCTTTGTGACACCGAGTCATAGTCACATGAGCAACTAAAATTATCCCCTGGGAATCCATTACTCAGCAAGAGAGGGATTGGATCTaagggagagagaaggaagagagaagaagaggctGGAGGAAGGAAAGAATGGTTAAATATTATGGTGTATGTGATAACATGTCCATATAGCTACATGTGTTGTGATGTTTTAGTGCTTAATGTTTAAGAGAAATTGTTTGTTTCAGTGAACCGTTTCTCATTCATCTCTTCCTTGAACTGCAGTTCCCAACATCTATGAGGAGAAAACTTCATAATGGAAAATTCAACTCTCTGACCTCTTTGGTCTGATGTCTTTGGACATAAGGGTGCAATATTTCAATGGTTTACATACTGAATAAGTAAGTAAGATAAGAGGTCTGTTAAGTATGGACTCCAGTGGATGTCACTGATGCATAAACTTTTCAGTTGTGTTGTCATTCTCACTGTACATCATTCAGTTGTATCTGTTGTAATGTTTATGAAtaagaaattatgttttaaaaaagacagTAAAAATATCAGAGTTTATGTTACAATCAAATTATCCAGATTGAATCCAGATTTAGCCTGTTAGAAGTTCAGCTGCAGAATTGTTTCTGCTGTTATACTGCAGTACTTATTTGTGTTGTAGTATCCAAGTCCAGTCAGTATTGGTCTCAAGACATGTGTTGTAGTCAAGACTGATAGAGCCAAATTCatgtcaagaccaagacttttattagttaAGTCTGAGGCAAGACCAAGACTggattcatataaaaaaaaaaaaaatgaaatgaaaaaaagaaattaaata

Function

NR:

description
PREDICTED: retinal guanylyl cyclase 2-like isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004383 guanylate cyclase activity molecular_function

KEGG:

id description
K12322 GUCY2F; guanylate cyclase 2F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007242027.2 True 5001 mRNA 0.47 19 35971343 35988863

Neighbor

gene id symbol gene type direction distance location
LOC103025363 LOC108412586 coding downstream 6932 35944355 ~ 35964411 (-)
col4a6 col4a6 coding downstream 105412 35735172 ~ 35865931 (-)
LOC103025974 ankrd46,LOC108428588 coding downstream 239044 35728712 ~ 35732299 (-)
LOC103027072 t185a,tmem185a,t185l,LOC103027072,LOC108428587,LOC108429425 coding downstream 244143 35720786 ~ 35727200 (-)
m1ap m1ap coding downstream 413201 35520728 ~ 35558142 (-)
LOC103024731 rasl11a,LOC108412587,LOC107596470,LOC107707904,LOC107684967 coding upstream 23917 36012780 ~ 36017524 (-)
LOC103023665 LOC108412584,LOC108267422,LOC107702308,LOC107596505 coding upstream 48145 36037008 ~ 36106859 (-)
nhsl2 nhsl2 coding upstream 126794 36115657 ~ 36273884 (-)
rps4x rps4x,LOC103480264,LOC107695327 coding upstream 291635 36280498 ~ 36285048 (-)
cited1 cited1,LOC107695332 coding upstream 299143 36288006 ~ 36292660 (-)
G146703 NA non-coding downstream 43815 35926843 ~ 35927528 (-)
G146666 NA non-coding downstream 224229 35741331 ~ 35747114 (-)
G146665 NA non-coding downstream 237040 35732760 ~ 35734303 (-)
G146654 NA non-coding downstream 258030 35709442 ~ 35713313 (-)
G146585 NA non-coding downstream 510513 35459003 ~ 35460830 (-)
G146743 NA non-coding upstream 42276 36031139 ~ 36035502 (-)
G146753 NA non-coding upstream 170893 36159756 ~ 36163324 (-)
G146754 NA non-coding upstream 172737 36161600 ~ 36165981 (-)
G146875 NA non-coding upstream 327801 36316664 ~ 36318207 (-)
G146892 NA non-coding upstream 451892 36440755 ~ 36444051 (-)
G146686 NA other downstream 87022 35883609 ~ 35884321 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other downstream 492149 35463197 ~ 35479194 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other downstream 535636 35404898 ~ 35435707 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other downstream 1594673 34229920 ~ 34376670 (-)
LOC107197333 NA other downstream 2185922 33785095 ~ 33785421 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 309776 36298639 ~ 36338664 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other upstream 677336 36666199 ~ 36706281 (-)
poln poln,haus3 other upstream 1096133 37084996 ~ 37246025 (-)
G147092 NA other upstream 1363215 37352078 ~ 37391735 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other upstream 1519798 37508661 ~ 37514452 (-)

Expression


Co-expression Network