LOC103027072 (t185a,tmem185a,t185l,LOC103027072,LOC108428587,LOC108429425)


Basic Information

Item Value
gene id LOC103027072
gene name t185a,tmem185a,t185l,LOC103027072,LOC108428587,LOC108429425
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 35720786 ~ 35727200 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007242034.3
GTAGGTAGTCTCCTCTGTTGCAGACTCTGTGTGGTAATGTAGCTTTTACGCACAgataggctaagctaggctaacTGGAGGTAGATGGGTTTGGTGGTGTTTAGGAGTTGAGGGGATGTTTGTTGAGCAGTGATgtggtttatttctttatcaTGAATCTGAGAGGACTGTTTCAGGATTTTAATGTCAGCAAATTCATCATCTACGCCTCCTTGTTGCTGTTCTCTGTTCTGCTGGCGCTGAGGCTGGATGGAGTTGTCGAGTGGAGCAGCTGGGCTGTTTTCACACCCATCTGGCTGTGGAAGCTCATGGTTGTCATCGGAGCATCTGTTGGTACTGGTGTGTGGGCTCACAATCCACGCTACAGagcGGAGGGCGAGACATGTGTGGAGTTCAAAGCCATGCTGATAGCAGTGGGCATCCACATTCTCCTGCTGATGTTTGAAGTATTGGTGTGTGACAGAATTGAGAGGACCTCATCTGGCCATGTCTGGCTTCTCGTCTTCATGCCCCTTTTTTTCGTCTCCCCGCTGTCAGTGGCTGCTTGTGTGTGGGGATTTCGCCATGACCGGTCGCTGGAGCTGGAGATTATGTGTTCTGTCAATATTCTTCAGTTCATTTTCATTGCCTTGCGGCTGGACAATATCATCAAATGGTCCTGGCTGGTAGTGTGTGTGCCGCTGTGGATCCTCATGTCATTCCTGTGCCTGGTGGTGCTCTACTATATTGTCTGGTCTATGCTCTTCCTCCGCTCCATGGACATCATTGCAGAGCAGCGTCGCAATTATGTCACCATGGCTGTTAGCTGGATGACTATCGTAGTGCCACTCCTCACATTTGAGATCTTGCTGGTGCATAGGCTGGATGGCCTTAACAAATTGAGTTATGTGTCTGTTTTTGTGCCTTTGTGGGTCTCATTGATCACTCTCATGACCACCACTTTCAGACAAAAGGGCGGGAATCACTGGTGGTTTGGCATCCGTAAAGACTTCTGTCTCTTCCTACTTGAGCTCTTCCCATTCCTTCGAGAGTATGGCAACATTTCCTACAACCTGCAGCATGATGACTCTGAGGTTTTCGAGGAGATACCAGTTGCACCCGAACCTTTGAAAAGTGGCCCCAAGTTTCTCTGCAAAGAAGTGGAAATCATGCCGAGTCCTGGGAGATATTTTGACCCGCCTCCTAAACTGTGCATAGACATACCTGACTGAACAATCTTTGGTGCTGTGACTGAACTCATCAGGAGAAGGAAGATTGCAGGAGAAGACTGAAAACAAAAGACTGCTTTTCTCCTGATATTTCTGCGTGTTTGGTGTACTTGATGAACTTTTTAATGCTAAAGGGATGAAGAAGACATTATAAAGAGCCTATAAAAGCAGTGAAGTTACTTTACCACTACTACAGTTCCAGTGGTCAGAACTTTTTCTTGACTTTGTGGAAGACTTAGCAGCTGAATGCCAAATATCTGTGAAAGACTGATTCCACAGACATGCTGACGATAGTACACCCTGCAGCAGCACAGGTTTAACCCCCTGTTTCATCAGACAGTGTGGATGGTGTacttttatctctttattaattctaaaaagGCTGTTACTGCACTTTATATTGTTCATAATCCGTTTTAATTCTGTTGACCATATAGACAGCAGTTCTGTTATGCAGAAGCTTTTATGTTAGCTTATATAAAGCTTTGACTCTAGAGCAGGGATGGGCAGATCCATTTTTGGAGGGCCAAATTCCTGCACAAGtctgtaatattttttatttctcttttaatgGCATGTGGGCAATTAACTGTGGGTAATTGAGGGCCATGAAAGATACATCAGTTGCATCCTTAAATGTTTGAATGCCTGCTGCATTTCTCTGTTGTATACAAAGCGACCTTCACTTTGGAACAGCCTTCTTTGTCATAGTGGCCGAGAAAATGTAGATTACCTCTGCTGCAGCCTAGGTttggagggaggggggggggtgggtgcTGCAGTGGTGGCTGAAGAATTTGCTGGAGAGCAGTGACATACATTTGTTAGCATAGCAATGCCTTATCACTGCCTATTAATACAAAACAGgttagtatattaatattttgtgtactgACCCACCAATCCCACACTATTAATATTGGTATATAGTATTTTCCTTCTAGTATTAGTGTGTGGTTCACTGTTTGGGTGCAGTCTATTTCTGTTTGAGCAGGGAAATCAGCAAACAATGCTGGATTCTGGTCTCCATTGCCCACCCTTGCTCTAGAGTCACCACACTGCTTAAACATTGAAgagagtttttaattttgtggtACCAATTTCCCCccaaaatatattgtaaatgttttcAACTGTAtcaagttgtttttattttctgttgattttactttaaatctaattttttaTGCAGTGTTGCCTTAATCAGTCTGTCCAGGGAGCGGTTTTCCAAATGCATTGTggaatgtgtgtatagtgtcGTCAGTGTGAGAACTCTGGCTGGCAGCGTGGATTTAGTTTAACATTTTGCAGGATGGACTGATGGTGCCCGTGCTCAGCAGGTCTGAGCTTTATCATAATAGTGCTGCTGTCTTTAATTGGACCAATTTTATAAGGTTCTGTCCACTCTGATCCGTTTGATTCTTAGtgaggccttttttttttacccattaaaatttgtttattttatatcagtATGTGTTTATAATCtgttaataaatattgtt

Function

symbol description
tmem185a Predicted to be integral component of membrane. Predicted to be active in dendrite.

NR:

description
transmembrane protein 185A-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007242034.3 True 2713 mRNA 0.43 7 35720786 35727200

Neighbor

gene id symbol gene type direction distance location
m1ap m1ap coding downstream 162644 35520728 ~ 35558142 (-)
nagk nagk,LOC107697250 coding downstream 230428 35485919 ~ 35490358 (-)
LOC103029051 slc8a4b,LOC108428577,LOC108267603,LOC107721660,LOC107583282,LOC107661969 coding downstream 330235 35291168 ~ 35390551 (-)
LOC103029676 LOC108428539,LOC108268191,LOC107661966,LOC107744268,LOC107721670,LOC107661087,LOC105894187 coding downstream 608673 35095250 ~ 35112113 (-)
LOC103030319 LOC108428574,LOC108267639,LOC107583288,LOC107661089,LOC107721658,LOC101077706 coding downstream 777129 34898804 ~ 34943657 (-)
LOC103025974 ankrd46,LOC108428588 coding upstream 1512 35728712 ~ 35732299 (-)
col4a6 col4a6 coding upstream 7972 35735172 ~ 35865931 (-)
LOC103025363 LOC108412586 coding upstream 217155 35944355 ~ 35964411 (-)
LOC103025043 LOC108412585 coding upstream 244143 35971343 ~ 35988863 (-)
LOC103024731 rasl11a,LOC108412587,LOC107596470,LOC107707904,LOC107684967 coding upstream 285580 36012780 ~ 36017524 (-)
G146654 NA non-coding downstream 7473 35709442 ~ 35713313 (-)
G146585 NA non-coding downstream 259956 35459003 ~ 35460830 (-)
G146583 NA non-coding downstream 271293 35449189 ~ 35449493 (-)
G146559 NA non-coding downstream 432377 35269786 ~ 35288409 (-)
G146561 LOC108428576,LOC107721661,LOC107661090,LOC108267602,LOC107583283,LOC107744270 non-coding downstream 459509 35253731 ~ 35261277 (-)
G146665 NA non-coding upstream 5560 35732760 ~ 35734303 (-)
G146666 NA non-coding upstream 14131 35741331 ~ 35747114 (-)
G146703 NA non-coding upstream 199643 35926843 ~ 35927528 (-)
G146743 NA non-coding upstream 303939 36031139 ~ 36035502 (-)
G146753 NA non-coding upstream 432556 36159756 ~ 36163324 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other downstream 241592 35463197 ~ 35479194 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other downstream 285079 35404898 ~ 35435707 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other downstream 1344116 34229920 ~ 34376670 (-)
LOC107197333 NA other downstream 1935365 33785095 ~ 33785421 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 2615199 33100297 ~ 33105587 (-)
G146686 NA other upstream 156409 35883609 ~ 35884321 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 571439 36298639 ~ 36338664 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other upstream 938999 36666199 ~ 36706281 (-)
poln poln,haus3 other upstream 1357796 37084996 ~ 37246025 (-)
G147092 NA other upstream 1624878 37352078 ~ 37391735 (-)

Expression


Co-expression Network