LOC103032728 (lrch4,LOC108428567,LOC107661958)


Basic Information

Item Value
gene id LOC103032728
gene name lrch4,LOC108428567,LOC107661958
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34115141 ~ 34170245 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007242053.3
GATTGACAGTTAAGCTAAGTAACTCCGGGCGGaccgctgccgctgctgctgctcctcggCTAACTTTACCAAACCCTACACGCTGGATTTAACATCGTTTCCGGATTACTCCGCACCTTCCTTATGAGCGCTCGCCCTGCTGAAGTAGCAGCGCGGGGGAAATGAAAGTTTGAGAGCGGCTTTTTATCGGTATAAAGAGGAAAATCGGGGGATTATTTGTGTTTCATGGCTGCTGGGGATGGGTCCCAGCTGCCGGCGACAATAGCGGCCAGCAGGAGCGTGGAGAAGTCCCTGGAGGAGGCGGCGGCCAGCGGAGCTTTAGTATTATCCAACCGAAAACTGAAGGAATTTCCGCGGACAGCTAAAAACTATGATTTGTCCGACATTACACACGCAGACTTGACGAAGAACCGGCTGTGTGAGCTGCCAGAGGAGCTGTGCCAATTCATCTCTCTGGAGACGCTCAGCATCTACCACAACTGTGTGCGTTCTTTGCCCTCCTCGCTGTGTCATCTACAGGCCCTCACCTACCTCAACCTCAGtcgAAATCAGCTGTCCAGCTTGCCCCCGTCAGTATGTCAGCTCCCTCTGCTGCGAGTCCTTATCGTCAGCAACAACAAGTTATCAGTCTTGCCCGCTTCCATGCACACTCTGACACATCTCCGACAACTGGATGTGAGCTGTAATGAGCTGCAGTGTTTGCCAGCGGAGCTGGGTCAGCTGGAGTATTTACGGGATTTGAACTTGAGGAGAAACCAGCTCACGACTCTGCCAGAGGAATTGTCTGAGCTGCCACTTGTACGTCTAGACGTATCATGCAACCGCATTTCCCATATTCCTGTGTGCTATCGGCACCTGAGACACTTGCAGACCATCATTCTGGACAACAACCCTCTACAGATGCCTCCAGCCCAGATATGCTCCAAAGGGAAGTACCACATCTTCAAGTACCTGAACATGGAAGCCTGCAAGAGGAGCCAGGACCCACTGGAGAGAGTTCTGCGGCCCACTTGCCTTTCAGACCAGGAGCTGTTCCCTGGTCCCTATGGTGGTCTGGACTCAGGCTTTAACAGCGTGGACAGTGGTAGCAAGAGATGGTCAGGAAATGAGTCTGCAGATGATTTCTCTGAGCGATCTCTGAGGTTAGCTGAAATTTCTCGTGAGCACACAAATCTACAAGAAGAGGAGGAGCGAGATACGCTGCTGAGTACCCCCAGAGTAGTAAATGGTGATTTGGAGCAGGTGGACTTTATTGACAGCAGCGTcacagaagaggaagaagagagcTGCAAGCCAGAGCCTCCCAGTCCTCCGCAAACATCACCCCCACAGGAAAAGGCAGAAAGTCGAAAAACCACGCCCTCCCAGAGCCCAGACTCCGTAGGCAGCAGAAAAAGTGTGAGCAGTGACTCAGCAGAAGGCTCTCCATCCAGTCCCACACTGGAGGAGAAGAGAAGGCCTGGCACGCTGCAACTGTGGCAGGAGAGAGAGCgggcacagcagcagcagagagatcgGGCCAGGGACACTGCTTTGCAGAAGACGGCAGTGAAAACAGGAAGTCACGCGGCGGCGACAGCCAAACAGGCAGGAACAGGAAGTGTCTCAGGTGTTGAGTCTATAGACAGCATCATCAGTTCTGTTAATGGACTTGGGCAGAGATGTGCGAGTGCGGATCAGATGAGCTCTACTATTCACTCAGTATCTCTTCAGCGTTCAACAAGCCGAACAGatGTGCCCTACAATAAACCCTGCTCTCCCACTGGCTCTGCCCCCAAACCCAACAGCTTTCTCTTCCGTACCTCTTCCCGCTGTAACGTCAAGCCGTCAGgcTCAGTGCAGTGTTTGGCTGAGGCAGGTCGGAGTGAGTCTCGCTCTGTGATTAAATCCCCTCGAGAGGACAAGGCAGAGGTTTCTCAGTTACGCAAGtctctagaatCTCGTTTGAAGATCACTCTTCCTGAAGATCTAGGAGAAGCTTTGTCTAACGGCACAGTCCTTTGCCAGCTTGCCAATCACGTACGCCCTCGATCAGTGTCCATCATCCACATTCCGTCTCCAGCAGTGCCTAAACTGAGTGCTGCGAAGTGTCGTCTCAATGTTGAAAACTTCATCGCTGCCTGCCGCAAGTTGGGTGTTCCCGAGGCGGACATTTGTTTAGCGTCTGATGTCCTGTGCAGTAAGATGCGTGCAGTGCAGCGCTGTGTGGAGGCTGTGTTGCTGatgggaggagaggaggagctgaaggagaagaagaaagcgctctcttcctctttctctcccttcccAATCGTTCCCAACGGCTTCCTGCTCTTCTACTGCCTCGCCATGGCGCTGCTCTACCTGCTCTACCAATACCTGATTGCATAGACTGTGCGTTTGTGTacgtttgtgtgcgtgtgtgtacgCAAGAGTGTGCATTGGGTCTTTCGTCCTAATCAGTGCCAGCGTGTTGAGTTCACACACATTAGCAAAGCTTCCCAGCAGTGCACTTCCACAGCGCTGGCACAGGCTGAGAGACGAGGCATATTGCTGCTCACTGCAGGACAGAGCAGGATGGAGATGCAAATCTACATGCACTGCCATCCAGACAGCCTGGCAATGGCACAGTATGCACACTTAAAGCCAATACTGTACTGTTAGACTATAAACTGCAATGCATTGGCATGCAATACACAGTGACTGatttatactgtatctatattaaCAGATTGTTCGTAAAAAAAAGGTAGAATACTGTTACAAAACTGGCTGCAGAATGACTATTCAAATGAtatactcttaaaaatgatggtgCAAGAAAGGGTTCTTTGGAGCATGAATAAGAGGAACCACTGTTACATAGTACCAGTAATATGCTTCAaggcataatattttaaaaagtgcaaaaacagCCCATTTTTGAATTACTGTGCAAACATTTTGGTAGCTGTGGATTGGATCTGAATTAAAATGTTCCTTATCTGGGCAtttagtgtttgtttatttaggcagagaataaaaaatattctaataaataCCAGTAACAATAGTATAATAATTAATGATGGccgtatttatttttctggttgTTTAATAATTTCCAGAGCTCTTCTCCTCAGAGTCTAATCTTATTTAGAGCTATCAACTATCAAaagctggtttggtaaatcagtgcTTAATGGTGTTGAATTAAGTGagctggaaaaaatatataaaattaaactgaTCTACAAATCTGCACAAAGCTTTGTTCATTAGACTAGCTTACAAGAACAACTACTTTCATTAAAATGTATCACAAAATTTGTGTTACTTCgtacattatttatgtttatagatatatagattttttctaTACTGTCTATTCATAGTACCACAGTTTTGCTTCAGTCATTTATATAGCACTTCCCATGGCACAATTATAACAGatacaaatttacaaatttaatTGATCAAATGACTTCTGTAGGTGATCTGAGGTGCCTCTAAGCCACTTGTTACATTTCGTTTCATAGCAGTCAGATTTTAGTCAAATGCATCTCTGGTTATATGGAGTAACAAGTATAAGTGCTTGTcgttaaaatatttatcaggACACAATCCAGAAACTAGTTTAAATCTAGACACACTTTAAGTCATCAGGTGTAAATATGAATAGGTACCATGAAGGTTCCTTGATTATTAAGAGAGCAAAGAAAATATTCtataaatattgaatatttggGGACGGTTGATCCTTGATGGTTCTTTGCTTGGCAGCGTAGTTCTAAGAACAAGCTGGTGTTATAGGTGTACTGGGAGTACTGGGTCGTCATTTCCTGTCCCGGATCAATCCGAAACCCAGCACAGCTTAAAACTTTGCTCTGTAAAACCTACTCAGTAAATAAGCTAAATTCACTTGTTAAAAACCGAATACATTAAGAACATGATAAAAGTTCTATTCTTTACTTCATAGAGCACCTTTTCTAGcaccttcatttttaagtgatgtcATTCTGAGTGATGtccacagattttattttatttttctggatCCCCTTCTAGTTTTACAGACACTACAAAAAAGCATCTTTAACACATCCCTCACTTTTGAGCGCTCACTTTTGAAATGATCTTGTAATCTTGTTCTTACTGTTCAGTTCCCAAAGGGCTTCTCCACCGCTTTGCCTTAGCATACACGCCCAGTCAGTTTTCCAGGATGGTGTAGTATTTTATATGTGTCCCTTGGGCAGAGCGTGTTTTTTTCCTAAATGCTGCTTTTGGTGTTTCAGCCCCTGTTTTGTACTTTACTGGCACAAAGAGTAAAAGCTCCTCACAGCTTGTTTAAAGGGCTTTAAAGTTTCAACCACTTTCTCCTCTCGGTtctcgcaaaaaaaaaaaaaaagtgcctcCAGTGCCTCCAGACTAAACCTGAACCACTTCAGGCTGGTTAGCCGAGCCCCAGTCCCTGTTACTATCCCTAGTATCTGTTTATTATATCCAGTTTTTTTTGGAACAATGTGTACATAGTTAGTTATTTAAATACAGCATTATGATTGATTCCCACttcactgtttcttttttttttaattggctggGGTTTATTAGGACCTGGaattaaatgttctaaatgtttGCAGCTCTTTTCTATGTTGTCCTTATAACTGTGACCACAAGGGAGCAGTGGTGTTGTACAACTGCACTCAAAGCTATATTCATGTCTTATGGTACAGAAACAAATGTCTCAAAGCTGTGTTATGTtctgttattgttttatttttttttgtatgtatgttcCTGCCAGCTTACTGTATTACATGTGACTaagttattatttgtttatttatttatgcattccTGTGTTGAGCAGCAGTATTGGGTGAAACGAGGACTCACAGCATGAATCCTGATTGGCTCTGGTGGCGCTGTGACCAAAAATGTGAGGCACTTAACACTTAATTGCATAATAAGACACTTAAGATACTTCTGATTTGAGATAAGTGCCTGTTTTggtcaggaaaataaaataatgactgAAATTCACTGAGCTTATCTCAGGGTTCTGATGCAGGACACAAATGACTTGTAGAGTACgttatgttatatatgtgtatatacacagtaaTATAGGCTTGCATTTAAGCATGCAAATGACCAAATAGACACCACAGATTTTAATAAATCATGCAAAAGACTTCCTCAAATTGATCCCTGTTGAAATCCTACTCCACTAAACCCTTGTTAAGCTCCTTTGGCCGCATTCTAAATGTGTCAGAAGTGTTGTTTTTAGGCTGGTAATGTGTTGTGAGCACCCATGTTCCCCCAGTACTGTATGCTGCTGTTGCTTTTGTGTTCCCTGCATACTTAATGTGATTTAGCAGCTTTGCAGACAGTTGACTAACGAGCAGACGCTCATCTGGAGGGAGTGATAAGGGCACataggagaagagagagaaagagcgcgaGAAAAGGCaaggagaaacagaaggacGCTTGAATGAAAGGATAGGAATGTGAGTGGAGAAATGGAATGTTTAGAAATGGGTTAATTTTCACTTATCCAAATTATTGCTGAATCCTTTTCACAGAGGTGTTTTCTTCTTGTACAcgcaatttaaaaaaagcttgtTCAAACACGTAATACGTGGAAAGCggatgtaaaataaatatttctggAGCATTCAGCAGATCTCACTTTAGTAATGTCACACACTGCTCAAATAGCACATTTCTAATctaacattaattaacagtgtaGAGAAATGAAACGACTGAATTAAAGAGCTCATCTCAGCAGACTGCTGCAAGCTACTATAGATCAGCCATGTAACCAATCAGAATAGGGACTGTTTAATTAGTACACAGTACACGTAGCATATTGTCACAGTCATgcaaaaatcttgaatcttcaAATCATCTGCTTTACATTAACTTGAACTGAAGCCCAATACAATACAATCCCAGTACCACTGAAAACACCATTAATTTTTCATGTGCAATGAtaaaatttgcatatttcatcCCACACTAATTAGAAACACTTTTAACTACAAATAAGTATGTACATATGTAAATGCATGTGGCTAAAATCTTATCAGGATACCTAGGATAGAATCTAAATACTCATATGCTAGTCACATAAAGTGACCAGGTCTAAACAGAGTTTTAATATCACCCACTTTACATGCGCACGCCTGTTTTTGTTAAATGAGATTATTGTGACAATAATGTTTCAACCAAAACTTTGTCTAATGTATTGGAGCAAACTGGTTTAGAGTTGAATTTCCATCTTAAAAGCAATTGTTAAAGAAACAAGAtgtgtattttgtaatatttatatcCTGCTTATGTATTTAATGAACTTAATTCTAAGTTTATATAGattaagacatttttttgttgtaaagaaattattaaaaaagcagaaaagatCA
>XM_007242054.3
GATTGACAGTTAAGCTAAGTAACTCCGGGCGGaccgctgccgctgctgctgctcctcggCTAACTTTACCAAACCCTACACGCTGGATTTAACATCGTTTCCGGATTACTCCGCACCTTCCTTATGAGCGCTCGCCCTGCTGAAGTAGCAGCGCGGGGGAAATGAAAGTTTGAGAGCGGCTTTTTATCGGTATAAAGAGGAAAATCGGGGGATTATTTGTGTTTCATGGCTGCTGGGGATGGGTCCCAGCTGCCGGCGACAATAGCGGCCAGCAGGAGCGTGGAGAAGTCCCTGGAGGAGGCGGCGGCCAGCGGAGCTTTAGTATTATCCAACCGAAAACTGAAGGAATTTCCGCGGACAGCTAAAAACTATGATTTGTCCGACATTACACACGCAGACTTGACGAAGAACCGGCTGTGTGAGCTGCCAGAGGAGCTGTGCCAATTCATCTCTCTGGAGACGCTCAGCATCTACCACAACTGTGTGCGTTCTTTGCCCTCCTCGCTGTGTCATCTACAGGCCCTCACCTACCTCAACCTCAGtcgAAATCAGCTGTCCAGCTTGCCCCCGTCAGTATGTCAGCTCCCTCTGCTGCGAGTCCTTATCGTCAGCAACAACAAGTTATCAGTCTTGCCCGCTTCCATGCACACTCTGACACATCTCCGACAACTGGATGTGAGCTGTAATGAGCTGCAGTGTTTGCCAGCGGAGCTGGGTCAGCTGGAGTATTTACGGGATTTGAACTTGAGGAGAAACCAGCTCACGACTCTGCCAGAGGAATTGTCTGAGCTGCCACTTGTACGTCTAGACGTATCATGCAACCGCATTTCCCATATTCCTGTGTGCTATCGGCACCTGAGACACTTGCAGACCATCATTCTGGACAACAACCCTCTACAGATGCCTCCAGCCCAGATATGCTCCAAAGGGAAGTACCACATCTTCAAGTACCTGAACATGGAAGCCTGCAAGAGGAGCCAGGACCCACTGGAGAGAGTTCTGCGGCCCACTTGCCTTTCAGACCAGGAGCTGTTCCCTGGTCCCTATGGTGGTCTGGACTCAGGCTTTAACAGCGTGGACAGTGGTAGCAAGAGATGGTCAGGAAATGAGTCTGCAGATGATTTCTCTGAGCGATCTCTGAGGTTAGCTGAAATTTCTCGTGAGCACACAAATCTACAAGAAGAGGAGGAGCGAGATACGCTGCTGAGTACCCCCAGAGTAGTAAATGGTGATTTGGAGCAGGTGGACTTTATTGACAGCAGCGTcacagaagaggaagaagagagcTGCAAGCCAGAGCCTCCCAGTCCTCCGCAAACATCACCCCCACAGGAAAAGGCAGAAAGTCGAAAAACCACGCCCTCCCAGAGCCCAGACTCCGTAGGCAGCAGAAAAAGTGTGAGCAGTGACTCAGCAGAAGGCTCTCCATCCAGTCCCACACTGGAGGAGAAGAGAAGGCCTGGCACGCTGCAACTGTGGCAGGAGAGAGAGCgggcacagcagcagcagagagatcgGGCCAGGGACACTGCTTTGCAGAAGACGGCAGTGAAAACAGGAAGTCACGCGGCGGCGACAGCCAAACAGGCAGGAACAGGAAGTGTCTCAGGTGTTGAGTCTATAGACAGCATCATCAGTTCTGTTAATGGACTTGGGCAGAGATGTGCGAGTGCGGATCAGATGAGCTCTACTATTCACTCAGTATCTCTTCAGCGTTCAACAAGCCGAACAGatGTGCCCTACAATAAACCCTGCTCTCCCACTGGCTCTGCCCCCAAACCCAACAGCTTTCTCTTCCGTACCTCTTCCCGCTGTAACGTCAAGCCGTCAGgcTCAGTGCAGTGTTTGGCTGAGGCAGGTCGGAGTGAGTCTCGCTCTGTGATTAAATCCCCTCGAGAGGACAAGGCAGAGGTTTCTCAGTTACGCAAGtctctagaatCTCGTTTGAAGATCACTCTTCCTGAAGATCTAGGAGAAGCTTTGTCTAACGGCACAGTCCTTTGCCAGCTTGCCAATCACGTACGCCCTCGATCAGTGTCCATCATCCACATTCCGTCTCCAGCAGTGCCTAAACTGAGTGCTGCGAAGTGTCGTCTCAATGTTGAAAACTTCATCGCTGCCTGCCGCAAGTTGGGTGTTCCCGAGGACTCTCTGTGTCCGTCTCAGCTGATCCTGGAGGAAGAAGGTTTGACTCGCATCGCCACCACCGTCCAGACCCTGCTGGAGCTGCCGCCGCCCGGCCCACGCCGTGGCTCTCGCCAGGAACTTGGAGGCCTAGTCATGCATTGTCCTCCTCAAAACGCCAACAACCCATAGACTAGCGACTCGTAACTTATATACCAGATAACATACCCGTGTTGGCCCTGTATGAGTTGTCTAACTGGGACTCAAGGGTTTCCATGGGGTTTCATGTTAGCTCTGCATAtagtactagtgcatctcaaataattagaatatcattgaaaagttactttatttcagtaattctgttgaaaatgtaaaactcatatattatatagatgtattacacagagtgatctattttaagtgtttatttcttttattgttgatgattatggcttacagccaatgaaaacccaaaaatcaggcagtgtgccaagtcgtgctggaaaataaaatctgcatctacataaaagtttGGACTTTGGACTaaacagtggaccaacacccgcagatgacatggctcttcAAAGCATtattgaccatcagtaaatttttaaTTTCGTTTGGAAATGAAAGGTCTAGTGTacagtttctacaatcagtcaTGGAACTATTGCAGTACTTTATGCTTctttctgctgacaacttttatggagatgttgatttcattttccagcaggacttggtgcACTGCCCATACTGCAGTCAAATTttatgagacactgatttttggttttcattggctgtacgtcataatcatcagcaataaaagaaataaacatttaaaatagagcaatcattgtttaaaacatctacataatattcattttcaactaaattacttaaataaagtaactttggACTATATAATAAAGCGCATGGACTTGGAGCACTTTGAGCCCATGCTGCAACCATATGAGACCCACATGATCATGCCATCTGGGATGTTTGACGTGTTTAAGTGAACCAGCTCATGATGATACAGGCTTCCAAaagtttttattacaatttcatGTACAGATTTTTGGATGTATAGTTCATTTTGTGTTAGCAAATAGTTATTGGGCGAATACAAGCATTGAACAAAggaaataatgaaagaaaattaAACATAAGTGTAAACCTGACAAA

Function

symbol description
lrch4 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in PML body. Orthologous to human LRCH4 (leucine rich repeats and calponin homology domain containing 4).

NR:

description
PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007242053.3 True 6395 mRNA 0.42 18 34115141 34164392
XM_007242054.3 False 3315 mRNA 0.48 18 34115141 34170245

Neighbor

gene id symbol gene type direction distance location
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding upstream 53174 34028450 ~ 34061967 (+)
dthd1 NA coding upstream 89768 34012482 ~ 34025373 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding upstream 2112658 31934723 ~ 32002483 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding upstream 2255484 31773504 ~ 31859657 (+)
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding upstream 2407186 31684228 ~ 31707955 (+)
LOC103039994 NA coding downstream 19389 34189634 ~ 34191960 (+)
rwdd4 rwdd4 coding downstream 206477 34376722 ~ 34383744 (+)
LOC103032224 LOC107583291 coding downstream 215085 34385330 ~ 34423139 (+)
LOC103039377 pcxb,LOC108428573,LOC108267638,LOC108412801,LOC107661088,LOC107721657,LOC107583287 coding downstream 511053 34681298 ~ 35048688 (+)
LOC103029357 plcb3,LOC108428576,LOC108267602 coding downstream 1026011 35196256 ~ 35273019 (+)
G146265 NA non-coding upstream 49632 34029326 ~ 34065509 (+)
G146243 NA non-coding upstream 210852 33882808 ~ 33904289 (+)
G146241 arap2 non-coding upstream 256833 33851013 ~ 33858308 (+)
G146237 NA non-coding upstream 291940 33821431 ~ 33823201 (+)
G146231 NA non-coding upstream 381339 33733540 ~ 33733802 (+)
G146284 NA non-coding downstream 10013 34180258 ~ 34212243 (+)
G146296 NA non-coding downstream 38897 34209142 ~ 34211321 (+)
G146424 NA non-coding downstream 418722 34588967 ~ 34589166 (+)
G146441 NA non-coding downstream 583677 34753922 ~ 34754396 (+)
G146457 ppp1r14b,LOC108268202 non-coding downstream 924116 35094361 ~ 35226268 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other upstream 37166 34067581 ~ 34077975 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other upstream 1010912 32879690 ~ 33104229 (+)
G146104 NA other upstream 1502579 32612125 ~ 32612562 (+)
trnae-uuc_22 NA other upstream 2043578 32071314 ~ 32071563 (+)
tbc1d19 tbc1d19,LOC107660707 other upstream 2188591 31892526 ~ 31926550 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other downstream 1229533 35399778 ~ 35406330 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 2321267 36491512 ~ 36494457 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other downstream 2520448 36690693 ~ 36719287 (+)
c16h4orf48 cunh4orf48 other downstream 2868690 37038935 ~ 37042227 (+)
G147496 NA other downstream 4444633 38614878 ~ 38615355 (+)

Expression


Co-expression Network