LOC103033595 (per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837)


Basic Information

Item Value
gene id LOC103033595
gene name per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34028450 ~ 34061967 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007242056.3
CGTGCGTGTTTGGAGGCATGGGGGCGCGGGAGCATAATAACTATTGGGCGGCGAGGCTGAGAAAGCACGACAGAGCTCAGGACAAAGCGGTTGTGTTCGTGCAGCAAAGCGAATATTGCCTTAGTTAGGGTTTATTACCGATTAAAAGCGAGTGTTTTCGTTAAGCGTTTAAGGACTGAGAGCTGTGTTCGTGTGGGAAGCAGTGGATCAAGCCTGTGGATGAAGGGAGAACGCATGGTGGAAAGAAGAAAGAGCAGAGCTGTGGACAGATCCTGAAGACGGAGAGCCTGGGCTTTCAGATGCTGATTTCTCGCTCTGTTCTCATCCATCTGGCTGCATGATTGTGGCCAAGACTGTTTCATAAGCAGGAGCCTTGCTGCATCATGTTTTGCTGCCTCCACCATTTCCAGAGTTAacagtttttgttcattttttctacaaataaatttCTTACAAATTAACTGTTGATATTTGGACATTGTAAGACTCTTTGTCCACTTGCTTCTGAGCCTTAAAAGGACCCTTTGTGTTACccatacatttattatattccaTATTCATGAAATGGACTCATGAAGCATCTTCAAAACAAAATGATTCACCTCTGCAGTACATGCAATCCAACCTAGTTCAGATCCAGATCAGCTCTTATTTAGTATCTTCTCAAGGTATAGGTGAGCTTCATCACCTAGGCAGCTGGTTATTCTGGTCATATTATGAGTGATGACAACTCGGACTCCGCTCCCAGCAATGGCACTCGGGGAGGAGTGGGCAGGGCAGAAGAGGATGAGGAGGCGGGACAACAGAACAGTTCACTTAGAATGAGCAGTGCCTGCCCCTCATCCCAACCAAGCAATGGCAGGACAGGATCGTCGCCAGGGGCCGACTCAGGACCCACAGGTTCGTCAGGGGACAACCGGGGGCCACATTCAGACGATATGGATGCACTGTCCAGCGGCAACGACtctggagagagggagagcgaagGAGGGCTGGAGAGGGAGAACGGTTCCAGAGGAAGACAATCTATGAGGAGTTATCAAAGCTCCTCCAGTCAAAATGGCAAAGACTCGGGAATGATGCTGGAGACCACAGAGAGCAACAAGAGttCAAACTCGCACAGCCCCTCACCCCCGAGCAGCTCTCTGGCGTACAGTCTACTGAGCGCTAGCTCAGAGCAGGACCACCCCTCAACCAGCGGCTGCAGCAGTAATCAGTCAGCTCGAGTGCAGACACAGAAAGAACTGATGCGGGCGCTAAAGGAACTCAAGATCCGCCTGCCTgcagaaagaaagaccaagGGCCGATCCAGTACACTCAACGCCCTCAAATACGCCCTCAGCTGCGTCAAGCAAGTCCGAGCCAATCAGGAATATTATCACCAGTGGAATGTGGAAGAGTGCCATGGCTGCAGTTTAGATCTCTCCACCTTTACCATCGAGGAACTTGATAACATCACCTCTGAGTACACGCTGAAAAACACAGACACGTTCTCCATGGCCGTGTCATTCTTGTCGGGAAAGGTGGTGTACATCTCTCCCCAGGGTTCATCTTTGTTACGCAGCAAACCAGAGAAGCTGCAGGGGACTGTGTTTTCAGAGCTACTCGCCCCTCAGGACGTCAGCACTTTCTACAGCAGCACTGCCCCCTGTAGATTACCATCGTGGGCTTCCTGCATTGGCTCGGCCCCTCCAGTGGACTGTACTCAGGAGAAGTCCATGTTCTGTAGGATCAGTGGAGATAGCTCAACAAGTGGACATATGAGGTATTACCCATTCAGACTGACTCCCTACCTGCTTACTCTGCGAGATTCAGACACAGCAGATGCACAGCCCTGCTGTCTGCTCATCGCAGAGAGAGTTCACTCGGGATATGAagCTCCTCGTATTCCTCCAGATAAGCGGATCTTCACCACCAGTCATACTCCCAGCTGCCTGTTCCAGGAGGTGGATGAGCGGGCAGTGCCACTTCTAGGCTATCTGCCTCAGGACCTGGTGGGAACTCCAGTCTTGCTCTATCTCCACCCTGAGGACAGACCCATAATGGTGGCCATCCACAAGAAAATTCTTCAGTTTGCAGGGCAGCCCTTTGACCACTCTCCGTTGCGGATGTGCGCCCGCAGTGGAGAGTATCTGACCATAGACACTTCTTGGTCCTCCTTCGTCAACCCATGGAGTAGAAAGGTTGCTTTCATTGTGGGACGCCACAAAGTCCGAACTTCTCCACTGAATGAGGATGTGTTCACTCTGCCGCGAGACCTGGAGGAGCGCACTCTGGCTCCAGACATCATTCAGCTAAGCGAGCAGATCCACCGGCTACTGGTGCAGCCTGTTCACAGCGGCAGCTCCCAGGGATACAGCAGCCTGACCAGCAACGGCTCTCATGAACATCAGCCCAGCGCAGCTTCTTCGTCTGAAAGCAATGGCACTGCTCTGGAGGACCCGGCTCAGCTCCACAAACCGATGACCTTCCAGCAGATCTGTAAGGACGTTCATATGGTGAAGACCAGTGGCCAACAAGTGTTTATCGAGTCCCGCAACCGGCCTCCTCCCAGGAAACACACTGCTACAGGTTCTTTACGGGCAATAGGGAACGCTGGACCAGGTGTTGCTCCTCCTTCTAAGAATACAGTGCCCTCCCAGCTTGTGAGAAAGGACTTATCACCTACATACTCTTACCAGCAAATCAACAGCCTGGATAGCATTATACGGTATCTGGAGAGCTGTAACGTTCCTAACACAGTAAAGAGGAAGTGCGGCTCATCTTCCTGCACAGCCTCCTCTACGTCTGATGATGACAAGCAGCAGGATGCTCCTGGCAATGCTAAAGGTCCATCAGTGGCTCTGGTTGGTGAGAGTACAGCATTGCCTGGTCTTACATTGCACAGTAAAGCGGAAAGTGTAGCATCAGTCACTTCCCAGTGCAGTTTTAGCAGCACCATCGTCCATGTGGGAGACAAGAAGCCCCCTGAGTCAGACATAGTAATGGAGGAAGCTCCTATGACTCCTGTTCCTGCTCGTCCGGTCCTTCAGCCCCCTGCTCCACCTCCCATCACTGCTGTCCCATCTCTGCCTCCACCCCCAACTCCACAGAGTCCTGCACCTACAGCTGAGAAGGATGGAGGCAGGAGGGGTGCAGGGGGAGCTGGGGGAAGGCTGGGACTGACGAAGGAGGTGCTTTCAGCACACACTCAGCAGGAGGAGCAGAACTTCTTGTGTCGATTTAAAGACCTGAGTCAGCTTCGAGTCTTCGACCCACCTTCAGCGCTCAAGCGGCATACTACCGCACCGTTTACTAAAGGTGTGCGCTGTTCCCGTGATTACCCTGCAATAGGAAGCACTGGTCGAAGGCGTGGTAGAGGCGGCAAGAGACTGAAACACCAAGAGACCTCAGAGCAGGGAAGCTCTTTAGGTCTTGCAGGTCCATCCAGAGGCCTCTCTACTGGAGCTCCTGCACACGAAGGAGTCCCGAACCCCTCTTTCCCCCTGGGCCCACCAACCACCTCATCCTCCTGGCCTCCTTCAGTGGGCTCCCAGAACAGCCTCCCCTCTGTGCCCTACCCACCAGGCATGCTCCCCCTGTACCCTCTTTACCCACCCCTCTCTCAGCCAGTCGCAGACCCATCCATGCAGCCTGGCCTTCGCTTCCCCATTCAGACTCCACAGATTGCACCTCCAATGGTTCCCCCCATGATGGCACTGGTACTGCCCAACTATATGTTCCCACAAATGGGCACTTCCTTAGCCCAGCCTGGCCCCACACCCATGCCCCAGCCCTTCTACAACCCAAACCTGGCATTTCCATATCCAGCAGCCAGCGCCGCCCTCCCTCCAGCTGTCCCTCAAACAGCCATGCCAGCCCCACCAAACCAATCCCGCTGCAGCAGCCCCCAGTCCTGCagccagagagagggaggggctgATAGAGAAGGGGCAGAGTCGCCCCTCTTCCAGTCCAGATGCTCCTCCCCTCTCAATTTGCTGCAGCTGGAGGAATCACCCACCAATCGATTAGAGGTCGCTTCAGCTCTGGCCTCAGGACAGCAGCCTACGACTCCTGCGGGAGGACAAGGTGGCGGGACTGGAGCCCAGGCCTCAACCAATCAGAGGGGTCCAGCAGAAGACGGCAAAGAGAATGAACATGGGGAAGCCAATGAGTCAAACCAGGATGCCATGTCCACTTCCAGCGACCTGCTGGACCTTCTGCTGCAGGAGGACTCTCGCTCTGGCACCGGCTCAGCTGCTTCAGGCTCTGGCTCCTCTGGAACCAGGTCCTCGGGCTCTGGCTCAGGCTCATCCGGATCTGGCTCCAATGGGTGCAGCTCATCTGGGAGTGGAACTAGAAGCAGTCAGAGCAGCCACACCAGCAAGTACTTCGGCAGCATAGACTCATCAGAGAATGACCACTCTCGGAAGCAGACAGCAGGGGGCGATGGAGAGGCACAGTTTATCAAGTGTGTTCTGCAGGACCCCATCTGGCTGCTCATGGCTGACACAGATGAAAAGGTCATGATGACCTATCAGCTACCGATCAGAGATCGAGAGACTGTGCTGCATGAGGACCGAATAGCTTTGAGGGCCATGCAGAAGCACCAGCCCCGTTTTACTGATGAGCAGAAGCGGGAGCTGAGCCAGGTGCACCCCTGGATCCGCACAGGACGGCTGCCACGTGCCATAAACATATCTACATGTACGGGCTGCAAGTCTCCTCCTTCAGTTCCACCCACCGCCCCCTTCGATGTGGAGATCCATGAGATGGAGCTGTGCAGTGTGCTGGAGGTGACGGATGAGGGCACCATGGCTGATAAACACACCCAGCCCGACACAGCCATGGAGGAGGGAGAGGCGGTGGAGGCGGGGCAGtggagagaggaagaagagaacgagagagagacgGTGGGAATGACGACACAAATCAGCGACCAAGAAATGACAGCAGAGGATCAGGACATTACCTCACAAATGAGGGAGGAGAAAGTGGGCAGTGTGACTGAAATGAGCCACTGAGCTGATGTTACTGAGCAGCCACTGGTGGTGGAGGAACAGAAAAGGCCTCCAGACTCTCACTCACTGAAGATATCAGCAGGTGCTGCTGGGGACAGACGGTACTTTTTTGGAAAGCACACTTCAAATCAAATGTTGACATTCAACAGACTTTTACAATGAT

Function

symbol description
per1b Predicted to enable transcription cis-regulatory region binding activity and transcription corepressor binding activity. Acts upstream of or within several processes, including dopaminergic neuron differentiation; positive regulation of dopaminergic neuron differentiation; and visual perception. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including heart; liver; muscle; ovary; and retina. Used to study attention deficit hyperactivity disorder. Orthologous to human PER1 (period circadian regulator 1).
per1 Enables E-box binding activity; kinase binding activity; and ubiquitin protein ligase binding activity. Involved in circadian regulation of gene expression; histone acetylation; and regulation of hair cycle. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: period circadian protein homolog 1-like

GO:

id name namespace
GO:0009266 response to temperature stimulus biological_process
GO:0009416 response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K21944 PER1; period circadian protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007242056.3 True 5166 mRNA 0.54 19 34028450 34061967

Neighbor

gene id symbol gene type direction distance location
dthd1 NA coding upstream 3077 34012482 ~ 34025373 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding upstream 2025967 31934723 ~ 32002483 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding upstream 2168793 31773504 ~ 31859657 (+)
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding upstream 2320495 31684228 ~ 31707955 (+)
LOC103032972 LOC103032972 coding upstream 2358321 31666799 ~ 31670129 (+)
LOC103032728 lrch4,LOC108428567,LOC107661958 coding downstream 53174 34115141 ~ 34170245 (+)
LOC103039994 NA coding downstream 127667 34189634 ~ 34191960 (+)
rwdd4 rwdd4 coding downstream 314755 34376722 ~ 34383744 (+)
LOC103032224 LOC107583291 coding downstream 323363 34385330 ~ 34423139 (+)
LOC103039377 pcxb,LOC108428573,LOC108267638,LOC108412801,LOC107661088,LOC107721657,LOC107583287 coding downstream 619331 34681298 ~ 35048688 (+)
G146243 NA non-coding upstream 124161 33882808 ~ 33904289 (+)
G146241 arap2 non-coding upstream 170142 33851013 ~ 33858308 (+)
G146237 NA non-coding upstream 205249 33821431 ~ 33823201 (+)
G146231 NA non-coding upstream 294648 33733540 ~ 33733802 (+)
G146226 NA non-coding upstream 331104 33697108 ~ 33697346 (+)
G146269 NA non-coding downstream 14237 34076204 ~ 34201199 (+)
G146284 NA non-coding downstream 118291 34180258 ~ 34212243 (+)
G146296 NA non-coding downstream 147175 34209142 ~ 34211321 (+)
G146424 NA non-coding downstream 527000 34588967 ~ 34589166 (+)
G146441 NA non-coding downstream 691955 34753922 ~ 34754396 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other upstream 924221 32879690 ~ 33104229 (+)
G146104 NA other upstream 1415888 32612125 ~ 32612562 (+)
trnae-uuc_22 NA other upstream 1956887 32071314 ~ 32071563 (+)
tbc1d19 tbc1d19,LOC107660707 other upstream 2101900 31892526 ~ 31926550 (+)
smim20 NA other upstream 2309399 31717142 ~ 31719051 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other downstream 5614 34067581 ~ 34077975 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other downstream 1337811 35399778 ~ 35406330 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 2429545 36491512 ~ 36494457 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other downstream 2628726 36690693 ~ 36719287 (+)
c16h4orf48 cunh4orf48 other downstream 2976968 37038935 ~ 37042227 (+)

Expression


Co-expression Network