chmp5 (chmp5,chmp5b,LOC108436133)


Basic Information

Item Value
gene id chmp5
gene name chmp5,chmp5b,LOC108436133
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21850265 ~ 21856543 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243414.3
GACATGTGATAGAGGTGTGACGTCAGGACGGGGCTGTTTCCGGGTGTTTTGTAGTTAGGGTTAGCTGGTCTCTGTGCGGCTCTTTCTGTGGTTCAGGAGATAAACACGCTCAAAATGAACCGAATTTTCGGTCGAGGGAAGCCCAAAGGACCCCCACCCAACCTTTCGGACTGTATAGGAACGGTTGATTCACGAGCAGAGTCTGTCGATAAGAAAATATCCAGGCTTGATGCAGAACTGATGAAATACAAAGAGCAGATGAAAAAAATGAGGGATGGGCCATCAAAGAACATGGTGAAGCAGAAAGCCATGCGAGTTCTTAAACAGAAGAGAATGTATGAAGGGCAGAGAGATCAGCTGATGCAGCAGTCCTTTAACATGGAGCAAGCCAACTACACCATTCAGACCCTTAAAGACACTAAAACAACTGTGGATGCAATGAAGATCGGagccaaagaaatgaagaaggCATACAAGAACGTGAAGATAGATCAGATTGAAGATCTGCAAGACCAGTTGGAGGACATGATGGAGGATGCAAATGAGATCCAGGAGGCGCTGAGCCGCAGCTATGGAACACCAGATATCGATGAGGATGATCTGGAAGCAGAGCTGGATGCACTCGGGGATGAGCTCCTTATGGATGAAGACACATCTTACCTTGATGAGGCTTCCACAGCTCCATCCATACCAGAAGGCGTGCCAGGAGAGAAAAGCACCAATCGGGACGGAGTGCTCGTGGATGAATTTGGCCTTCCTCAGATTCCAGCAACATAAGAAGAGAACTTTGGCAGCACTCACTCCTGCTTCATTGCGtttattgtacaaaaaaaacagggacATTTTGCATTTACACCTGTACCTTATTATGAAACCGGATCACCTACCTTAAAAGCTCTGGGGTGAAGAGAAATGCCTGTAAACACAGCCAGTTTCTAGGTCTTGATCTCATCCCAGATTATTATCTCTTTCTGCTTTATAAGGAATGTATGTAATCGACAGGAACTGTTAGGCTCTCTTATAATgattgttttgtttgatttaattttgaccaggtaaaaaaaaa

Function

symbol description
chmp5b Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and vesicle budding from membrane. Predicted to act upstream of or within protein transport and vacuolar transport. Predicted to be located in cytosol and endosome membrane. Predicted to be active in multivesicular body. Is expressed in peripheral olfactory organ; solid lens vesicle; and ventral mesoderm. Orthologous to human CHMP5 (charged multivesicular body protein 5).
chmp5 Enables cadherin binding activity. Involved in several processes, including cellular response to muramyl dipeptide; midbody abscission; and regulation of cell cycle process. Located in cytosol.

NR:

description
PREDICTED: charged multivesicular body protein 5

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0010008 endosome membrane cellular_component

KEGG:

id description
K12198 CHMP5, VPS60; charged multivesicular body protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243414.3 True 1066 mRNA 0.45 8 21850265 21856543

Neighbor

gene id symbol gene type direction distance location
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding upstream 10927 21819528 ~ 21839338 (+)
LOC111194247 NA coding upstream 102780 21740241 ~ 21747485 (+)
lypla1 lypla1,lypa1 coding upstream 126140 21718321 ~ 21724125 (+)
LOC103047292 tmem68,LOC107584594 coding upstream 217692 21624393 ~ 21632573 (+)
rps20 rps20 coding upstream 251825 21592040 ~ 21598440 (+)
LOC103040396 myom1 coding downstream 23567 21880110 ~ 21938486 (+)
malrd1 NA coding downstream 101477 21958020 ~ 22107652 (+)
LOC103046886 plxdc2,LOC107724400,LOC107684879,LOC107659453,LOC107598695 coding downstream 266363 22122906 ~ 22356385 (+)
nfx1 nfx1,LOC107742139,LOC108268165 coding downstream 504094 22360637 ~ 22392511 (+)
smarcd3 smarcd3,smarcd3b,LOC103047704,LOC108442951,LOC108268163,LOC106578675 coding downstream 541586 22398129 ~ 22477982 (+)
G143172 mrpl15 non-coding upstream 135090 21711366 ~ 21715175 (+)
G143127 NA non-coding upstream 148320 21700822 ~ 21701945 (+)
LOC111194179 NA non-coding upstream 191645 21655779 ~ 21658620 (+)
G143114 NA non-coding upstream 207407 21634242 ~ 21642858 (+)
G143112 NA non-coding upstream 267599 21581424 ~ 21582666 (+)
G143282 NA non-coding downstream 528794 22385337 ~ 22385673 (+)
G143283 NA non-coding downstream 622123 22478666 ~ 22566331 (+)
G143334 NA non-coding downstream 713481 22570024 ~ 22576268 (+)
G143336 NA non-coding downstream 715170 22571713 ~ 22572857 (+)
G143325 NA non-coding downstream 726131 22582674 ~ 22586315 (+)
G143122 LOC108436138 other upstream 203560 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 238583 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 270541 21569082 ~ 21579724 (+)
G142820 NA other upstream 1060143 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1630116 20202648 ~ 20220149 (+)
G143324 NA other downstream 679142 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1528625 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 1547145 23403688 ~ 23406894 (+)
G143836 NA other downstream 1971405 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 2579836 24436379 ~ 24602402 (+)

Expression


Co-expression Network