Item | Value |
---|---|
gene id | rbpj |
gene name | rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 |
gene type | coding |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035912.1 |
NCBI id | CM008315.1 |
chromosome length | 41032606 |
location | 31773504 ~ 31859657 (+) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
rbpjb | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including animal organ development; blood vessel development; and somitogenesis. Predicted to be located in nucleus. Predicted to be part of MAML1-RBP-Jkappa- ICN1 complex. Is expressed in eye and head. Human ortholog(s) of this gene implicated in Adams-Oliver syndrome and dilated cardiomyopathy. Orthologous to human RBPJ (recombination signal binding protein for immunoglobulin kappa J region). |
rbpj | Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of transcription from RNA polymerase II promoter in response to hypoxia; and positive regulation of transcription of Notch receptor target. Located in cytoplasm; nucleolus; and nucleoplasm. Part of MAML1-RBP-Jkappa- ICN1 complex and transcription repressor complex. Implicated in Adams-Oliver syndrome and dilated cardiomyopathy. |
description |
---|
recombining binding protein suppressor of hairless isoform X2 |
id | name | namespace |
---|---|---|
GO:0007507 | heart development | biological_process |
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0001756 | somitogenesis | biological_process |
GO:0003140 | determination of left/right asymmetry in lateral mesoderm | biological_process |
GO:0002040 | sprouting angiogenesis | biological_process |
GO:0072149 | glomerular visceral epithelial cell fate commitment | biological_process |
GO:0039021 | pronephric glomerulus development | biological_process |
GO:0039022 | pronephric duct development | biological_process |
GO:0030325 | adrenal gland development | biological_process |
GO:0022008 | neurogenesis | biological_process |
GO:0060840 | artery development | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
id | description |
---|---|
K06053 | RBPSUH, RBPJK; recombining binding protein suppressor of hairless |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_007248002.3 | True | 4769 | mRNA | 0.44 | 10 | 31817747 | 31859657 |
XM_007248003.3 | False | 4591 | mRNA | 0.44 | 11 | 31773504 | 31859657 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC103032447 | LOC108428553,LOC106608959,LOC103364796 | coding | upstream | 65549 | 31684228 ~ 31707955 (+) |
LOC103032972 | LOC103032972 | coding | upstream | 103375 | 31666799 ~ 31670129 (+) |
acox3 | acox3 | coding | upstream | 153972 | 31597346 ~ 31619532 (+) |
man2b2 | man2b2 | coding | upstream | 188531 | 31572241 ~ 31584973 (+) |
ccnb1ip1 | ccnb1ip1 | coding | upstream | 206766 | 31563778 ~ 31566738 (+) |
stim2 | stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 | coding | downstream | 75066 | 31934723 ~ 32002483 (+) |
dthd1 | NA | coding | downstream | 2152825 | 34012482 ~ 34025373 (+) |
LOC103033595 | per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 | coding | downstream | 2168793 | 34028450 ~ 34061967 (+) |
LOC103032728 | lrch4,LOC108428567,LOC107661958 | coding | downstream | 2255484 | 34115141 ~ 34170245 (+) |
LOC103039994 | NA | coding | downstream | 2329977 | 34189634 ~ 34191960 (+) |
G145969 | NA | non-coding | upstream | 15837 | 31757097 ~ 31757667 (+) |
G145966 | NA | non-coding | upstream | 33712 | 31736796 ~ 31739792 (+) |
G145968 | NA | non-coding | upstream | 34397 | 31738782 ~ 31739107 (+) |
G145875 | NA | non-coding | upstream | 123619 | 31648526 ~ 31649885 (+) |
LOC111194381 | NA | non-coding | upstream | 140579 | 31627040 ~ 31632925 (+) |
G146034 | NA | non-coding | downstream | 148069 | 32007726 ~ 32012637 (+) |
G146047 | NA | non-coding | downstream | 210266 | 32069923 ~ 32070179 (+) |
G146053 | NA | non-coding | downstream | 216323 | 32075980 ~ 32076196 (+) |
G146062 | NA | non-coding | downstream | 391551 | 32251208 ~ 32251476 (+) |
G146064 | NA | non-coding | downstream | 419520 | 32279177 ~ 32280251 (+) |
smim20 | NA | other | upstream | 54453 | 31717142 ~ 31719051 (+) |
G145748 | mus81 | other | upstream | 419060 | 31352296 ~ 31354444 (+) |
G145711 | chd3 | other | upstream | 551170 | 31197218 ~ 31222334 (+) |
LOC103044823 | NA | other | upstream | 643481 | 31063439 ~ 31130023 (+) |
LOC103022860 | LOC103022860 | other | upstream | 858667 | 30911831 ~ 30914837 (+) |
tbc1d19 | tbc1d19,LOC107660707 | other | downstream | 32869 | 31892526 ~ 31926550 (+) |
trnae-uuc_22 | NA | other | downstream | 211657 | 32071314 ~ 32071563 (+) |
G146104 | NA | other | downstream | 752468 | 32612125 ~ 32612562 (+) |
pcdh7 | pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 | other | downstream | 1020033 | 32879690 ~ 33104229 (+) |
LOC103033902 | pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 | other | downstream | 2207924 | 34067581 ~ 34077975 (+) |