plaa (plaa,LOC107549730,LOC107661955,LOC107660709)


Basic Information

Item Value
gene id plaa
gene name plaa,LOC107549730,LOC107661955,LOC107660709
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31709203 ~ 31716725 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248005.3
ATTTTGtagtgtctctccctctctgctgGACGGGGCCGCTCGTGCTCTCTCAGTTCCGGGGCTGAatgagttttgttttttatcgtGCTGATTTAGCGGAGCTCTGAATTTACACCATGGCCTCTCCCAGCACCTACCGGCTCAGCTGCTCCATCCCGGGCCATGAGATGGATGTTAGGGGCCTTGCCGCCGCGGTTTTCCCTGAGGGAGGTTTCGTCTCCGTGTCGCGGGACCGAAGCGCCAGAGTCTGGGCTCCAAATTTAAGTGAAACTAGAGGTTACACGGAGATGCACTGTATGAACGGCCACACGAACTTCGTTTCCTGTGTCTGCATCATCGCCCCCAATGAAACCTACCCCAGGGGCCTTATTGCAACAGGAGGCAATGACAACATTATCTGCGTCTTCTCCTTAGACAGACCGGACCCTATGTTTACTCTGACAGGACACAAAAACACAGTGTGCACACTCTCAGCTGGGAAGTTTGGGACGTTATTGAGTGGATCATGGGACACCACAGCTAAAGTCTGGCTCAGTGACAAGTGTATGATGACTTTACAGGGGCATACAGCAGCAGTATGGGCTGTGGTGATTCTGCCAGAGCAGGGTCTTATGCTCACAGGATCGGCTGACAAGACTGTTAAACTCTGGAAAGCTGGACGCTGTGAGAGAACATATTCAGGTCATGAGGACTGTGTTCGAGGACTAGCTGTAGTGAGCGATGTTGAATTCCTGTCCTGTAGTAATGACGCCAGCATCAGGCGATGGATGGTGACAGGAGAATGTGTTCAAGTATACTACAGTCACACTAACTATATCtacagtctgtctgtctttccaaATGGACAAGacttcgTAAGCACAGGAGAGGACCGCACAGTAAGGATCTGGAAAAATGGTGAATGTGCTCAGACAATCCGTCTACCTACCCAGTCAGTctggtgttgctgtgttttacCTAATGGAGACATCGCTGTAGGAGCCAGTGATGGCATCATCCGTGTGTTCACTGAGAAAGATGAGCGTGTAGCGAGTGCTCAAGACCTGCAGGCTTTCGAAGATGAACTTTCTAAAGCTACTATTGATCCCAAGACTGGAGATTTGGGAGATATCAAGCCTGAGGAACTACCTGGAAGAGAACACTTAGATGAACCAGGCAATAGAGATGGTCAAACACGACTCATAAAGGAAGGTAATAACGTGGAGGCGTACCAGTGGAGCATGAGTGAGGGACGCTGGATGAAGATTGGAGACGTGGTGGGAGGGTCATCCAAGGACAGCTCTAAAAGAGTAATGTATGAGGGCAAGGAATACGATTTTGTTTTTACCATCGATGTGAATGAGGGTGGGCCCTCAATGAAACTCCCGTATAATGTGGCTGATGACCCCTGGCTGGCAGCACACAACTTCCTACAAAAGAATGATCTGAACCCCATGTTTCTGGACCAAGTGGCTAATTTCATCATTGAGAACACCAAAGGCCACACCCTAGGGCCAGCTCCTGCCTCTGCTGTAGATCCTTTTACAGGTTCAGGAAGGTATATCCCTGGGGCAGCAGATGAAAGACCAGGCTTTGGTGCTGACCCCTTTACTGGTGCTGGGCGATACATACCTGGATCAGGATCCACAGGAACAACACCTGCAGGTGTAGCTGATCCCTTTACAGGTAGAAACGCCTACTCTTCTGCTGCTCTCCAGAAGTCTGTCACAAATATTTACTTCCCCAAGATGGATGGCGTTTTTTTTGAGCAGGCCAATCCTACACAGATTTTCGCTAAGCTGCGTGAGCTGAATGGCAGTGCTCCAGAGGACCACAGACTAAACGACACGGTGCTGAGCAACCTGGAAAAGCTACTGCTCTCCATTTCAGACTGTAAGAGCCCAGATCAGCCCACAGCAGATCAGATCAGCATACTCTGGAGGACCAGCCACTGGCCTGAAGATATTGTTTTCCCTGTGCTGGACATCCTCCGCCTAGCAGTGCGGCACCCTGAGGTCAACGCTCAGCTTTGTGGAGGTACAGAGGGAGCCAGTCTATGCAACCTCCTGCTGGGCCTCATGTCACCTCAGGGCCGACCAGCTAACCAAATGCTGGCCCTCCGCACCTTCTGCAACTGCTTCTCTGGATCCCACGGTCGCTCTCTCCTCCTGAGCCAACGTGAAGCCGTGCTGTCCCGGGCAGCCGACCTCCGTTCTGTCTGCAACAAAAACATCCACGTAGCTCTCGCCACGCTGGTGCTCAACTACGCGGGTATACTGCACGGCCGACCGTCCGAGATCGAAGCCAAAGCCCAGTGCTTGTCTGTTGCTAGTAGTGCTCTAGAGGTGGTGCAGGACAAGGAGGCTGTCTTCAGGCTGCTGGTTGCACTCGGGACTACAGTGGCTGGAGACAGCACAGCCAAAGACCTGGCACGCTCGCTGGGcgtcaactctcagatcacaaAGTACGCCGGCGTGTCTGACCCGGCTAAAGTAGGCGAGTGCTGTCGACTAGTGATGGATGAACTGCAGTGATTATTACTCTAAAGAACTGAGCTGAGCGCTTTCAAAGACCTCACAAAAGTCGGCAAACATCTCCCTTACATGGTCATGGTCTTCTGTTCCCACCACCCACCAAACCCCCAAATACATAGTTTCTATTTAACTTGGTCTGATTTTTGGTGATGAAGGAGTTTGAATGTGGATGTGCATGATGTGaataataaacactgatgtATTAAAttgtttcctaaaaaaaa

Function

symbol description
plaa Predicted to enable ubiquitin binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and ubiquitin recycling. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including eye; ovary; pectoral fin musculature; solid lens vesicle; and trigeminal placode. Orthologous to human PLAA (phospholipase A2 activating protein).

NR:

description
PREDICTED: phospholipase A-2-activating protein

GO: NA

KEGG:

id description
K14018 PLAA, DOA1, UFD3; phospholipase A-2-activating protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248005.3 True 2737 mRNA 0.51 14 31709203 31716725

Neighbor

gene id symbol gene type direction distance location
sh3tc1 sh3tc1 coding downstream 30657 31656834 ~ 31678546 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding downstream 54094 31642324 ~ 31655109 (-)
LOC111194360 NA coding downstream 114816 31592291 ~ 31594387 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding downstream 136378 31566918 ~ 31572825 (-)
slc7a7 slc7a7,LOC107738042,LOC107683525,LOC107558406,LOC107731885 coding downstream 162943 31528602 ~ 31546260 (-)
trnae-uuc_21 NA coding upstream 340072 32056797 ~ 32056868 (-)
arap2 NA coding upstream 2116609 33833334 ~ 34001620 (-)
paqr9 paqr9 coding upstream 2363529 34080254 ~ 34088604 (-)
LOC111194385 NA coding upstream 2386034 34102759 ~ 34109347 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 2716106 34432831 ~ 34458413 (-)
G145998 LOC108428553,LOC106608959,LOC103364796 non-coding downstream 4369 31703294 ~ 31704834 (-)
G145956 NA non-coding downstream 52942 31655855 ~ 31656261 (-)
G145937 NA non-coding downstream 82251 31624728 ~ 31626952 (-)
G145929 acox3 non-coding downstream 103753 31599496 ~ 31605450 (-)
LOC111194380 NA non-coding downstream 118227 31585072 ~ 31590976 (-)
G146002 NA non-coding upstream 1879 31718604 ~ 31783241 (-)
G146004 NA non-coding upstream 20072 31736797 ~ 31739846 (-)
G146003 NA non-coding upstream 20971 31737696 ~ 31739112 (-)
G146005 NA non-coding upstream 40375 31757100 ~ 31757658 (-)
LOC111194382 NA non-coding upstream 130158 31846883 ~ 31849305 (-)
LOC103035326 sall2 other downstream 150742 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 206542 31499916 ~ 31502661 (-)
G145899 NA other downstream 223133 31483943 ~ 31486070 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 481625 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 1058897 30644395 ~ 30650306 (-)
cckar cckar,LOC106608554 other upstream 154332 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1383572 33100297 ~ 33105587 (-)
LOC107197333 NA other upstream 2068370 33785095 ~ 33785421 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 2513195 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 3688173 35404898 ~ 35435707 (-)

Expression


Co-expression Network