LOC103032972 (LOC103032972)


Basic Information

Item Value
gene id LOC103032972
gene name LOC103032972
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31666799 ~ 31670129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248008.3
GTGACTGGGCGTCTTCCTGTCTCAGAATCCTGCCTAAGTAGGCAGCATGGTGTACAATTCGGACACGGCCTCAGCCTCTAGtttgttagttaggttagcggGCTTAACGAAGTTAACTAGGTCTTTGTTAGCTGTTTGGTTTTACCTGAACGTTGTTTGTCGGAGTTGTAGCTTAGTAAACCACCGTTCTACCTCCACAAACCCGAAGAGACAGCAAAAAATGGAGTCCAAGAAATTAAAGCAGCCCAAGGCACCAAAATCTGAGGTGAAAGCCCCTCTTCGTCGATGGGAAGAAGCGGAAGACGAGGATTTCTGTAACCCCGACAAACTGCTTGTGTGTCCCTACGACCCAAACCACCAGATCCGCGCCTGTCGCTTCCCTTACCATCTCCTCAAGTGCAAGAAGAACCATCCTGAATTGGCCAATCAACTGTGGACGTGCCCATTCAATGCCCGTCACCTCATGCCCAAGCATGAGTTATCCCATCACATGTCGAACTGTGTGGACAGGTGCTCTGTGAGTGCTGACTATGtggaAAGTGCTGAGACACAGCGCAAATTTCAGGTACCTGTCAATAACTGGACAACCCCGGAGTGTGATGAAGATTGGGACCAAGAGGAAGAGGAGACAGTAGTCCCGGCAACACCATTTGTCTGGGGATTGTCAACCTCGCAACTTGGACAAGAAAGGTCTGAACCAACTGTGACCAACAGTTTGTCCTCCAGTCTCAGAGCACCAAGAGTTTTTCCTTGGAAACTGGACAAGTGAAGAATGTTATTTCCTCTAAAGCACTGTTGGTGAACATGTTCatcttattttgagtttaatttACAACACACTGAATCTTTTATTGACGACCCAAGTCCAAGAGAATCACTCAGAATGACTCAGAATAGCTTTCAGACTGGGTTTCAGAATGTTTAAAGGTGTGTCAGTTAAGTTAGTTTTTGGTTTGGCCTGTGAGATTGTGTCAAACAAAAGAGAAGGATGCAAGCAGGATCTAAGAGCAGTTAACTGTGACCTCTAGTACATTGTCATGGGTTGCTTTTGTGTTTCAAGTGCCAGGATGTTTTCATACTTCTCAGTTTTCAATTGATGacgtttacaaaaaaaactgtatgatTCTGAAGCCTTACTGACATTTTACGTGCACTTACTGATGCTAGCCTTTGGTTAATGTTTTGTGGCCTGGACTTCTATGTACCGTTAGTTTAACTTAAATTAAGAACATATTTAGGCTGCATAAAAATTGTGACAACTTACCAAGTTTGTAGACAGTAGCAGCATCACTTTGGCATGTCTTCTTCAGAAAAGCAATTGTTTCCTCCTTGATCTTTTCTTGGTTCAGGTTAAAGATTGTTCTATCCTCGTCTTTCAAAAAAATTTCCTCTGatctgttataaaaaaaaaaaaaacagag

Function

NR:

description
gametocyte-specific factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248008.3 True 1421 mRNA 0.43 6 31666799 31670129

Neighbor

gene id symbol gene type direction distance location
acox3 acox3 coding upstream 47267 31597346 ~ 31619532 (+)
man2b2 man2b2 coding upstream 81826 31572241 ~ 31584973 (+)
ccnb1ip1 ccnb1ip1 coding upstream 100061 31563778 ~ 31566738 (+)
oxa1l NA coding upstream 138892 31522021 ~ 31527907 (+)
LOC103022147 NA coding upstream 156123 31506176 ~ 31510676 (+)
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding downstream 14099 31684228 ~ 31707955 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding downstream 103375 31773504 ~ 31859657 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding downstream 264594 31934723 ~ 32002483 (+)
dthd1 NA coding downstream 2342353 34012482 ~ 34025373 (+)
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding downstream 2358321 34028450 ~ 34061967 (+)
G145875 NA non-coding upstream 16914 31648526 ~ 31649885 (+)
LOC111194381 NA non-coding upstream 33874 31627040 ~ 31632925 (+)
G145868 NA non-coding upstream 39837 31624722 ~ 31626962 (+)
G145859 ttc5,LOC107738047 non-coding upstream 98917 31566937 ~ 31567882 (+)
G145854 NA non-coding upstream 114690 31550533 ~ 31552109 (+)
G145966 NA non-coding downstream 66667 31736796 ~ 31739792 (+)
G145968 NA non-coding downstream 68653 31738782 ~ 31739107 (+)
G145969 NA non-coding downstream 86968 31757097 ~ 31757667 (+)
G145974 NA non-coding downstream 118816 31788945 ~ 31848894 (+)
G146034 NA non-coding downstream 337597 32007726 ~ 32012637 (+)
G145748 mus81 other upstream 312355 31352296 ~ 31354444 (+)
G145711 chd3 other upstream 444465 31197218 ~ 31222334 (+)
LOC103044823 NA other upstream 536776 31063439 ~ 31130023 (+)
LOC103022860 LOC103022860 other upstream 751962 30911831 ~ 30914837 (+)
G145543 NA other upstream 994612 30668799 ~ 30672187 (+)
smim20 NA other downstream 47013 31717142 ~ 31719051 (+)
tbc1d19 tbc1d19,LOC107660707 other downstream 222397 31892526 ~ 31926550 (+)
trnae-uuc_22 NA other downstream 401185 32071314 ~ 32071563 (+)
G146104 NA other downstream 941996 32612125 ~ 32612562 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other downstream 1209561 32879690 ~ 33104229 (+)

Expression


Co-expression Network