sh3tc1 (sh3tc1)


Basic Information

Item Value
gene id sh3tc1
gene name sh3tc1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31656834 ~ 31678546 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248009.3
GGAAGGAAAGCAACTTTTGACAAGATGTCAACCGCTGATGAAAGCAACACTGTGAACACAGTGGATTCCGAGCTTTCCACAGAGAACTCCAGCAATGATTCAGATATGAATAAAGACGAACCTGAAGTGATGGAAATGGAATGCAAGCCATCGAGAGGAAGAGACAGTATCAAGAGGACCTCAGCAGCATCTGAAGACAATGTTCCCACAGTGTTGGCTCTCCAGCTGGCTGTGGCAGAAGGACCGGACCGACTTCCTGCTGACAAGAACACACAGGAAGTCCTCTGCGGGAAGCTACGCATGCTGGAGGCTGACCTCACCAAAATCACAACCCTGATTGATGAATTTTCAGCTCATTTGGTGTCTGTCAACAGCGAGGAAAGGactatatatatcacttttaaaacatttgaggaAATATGGAAGTTCACCTCCTACCACAAGATGGGTTTTGTGGGTCAGTCTTTGGAGAATCTTCTTTTGGAACAGGAGTTCTGGTTGACCACTTTAGACCAAGAGCATTCAGGAATTGAGGTGTCGTTTAAAGAGGAGACACTAAATCTAATGTACAAAGGCTTTTTAATGCAAGAAGgctCTTTTTTTGGGAGCTGTACGGTTAATCAGATGTTCGACAGCTCCACATCAGGCAGTGACCTTTACCTGGAGCAGGGGGACATCGCTCTGTTTGAGCCTCCTTTCCTAGGCTCAGGATGGACTGTGCTGTCCTTGGCAGATGGATCAAGAGGAACTAAACCGAGGCCAGCCCTGGAACCAGTCATTCCTTTTCATGAGTGGTTTCTGAAATCCTGTCCTGAGAGTGTTTTGGTTGGCAGTGGAAAGACAGGCTGCAATCTCCCATTCCAAATGGCTGTAGGGATCTGCGAGGCAACAGAACTGTATGATGGTAACGGACCAGACGAGCTGAGTTTTGAGGCTGGTGATCGCATCATCATCCTAGGCCTACTAGTGACCTGCTTTGAGTGGTTTATGGGCAAGCTGGAGCGGACTGGTGATACAGGACTTGTCAGGACGACCCTGGTGAAAGCAACAGATTCTCTTTGTGAatCAGAGGAAATTTTTTTGAAAGACGAGGATAGAACAATCTTTAACCTGAACCAAGAAAAGATCAAGGAGGAAACAATTGCTTTTCTGAAGAAGACATGCCAAAGTGATGCTGCTACTGTCTACAAACTTGATTTGGCAAAGCCAGAATCATTTCAAAATAATTCCAATGCAGACATTGTTGATCATGTTGAAATGTACGCAGACCTGAGAAGAAAAATCACCAGCGTTTTGATTGAGACAAAGGAGCCAAATAGAAGTGAGAGCTTGCTGGGCAGTGCTGGTCTCCAGACTGATTCAAAGTCCACCGAGAAAGAGTCATCCCAGGAAATCCCTCATTTCACTGTGTGTTTAGAGCAGGGTGGTTCCAGCCCAGATGGACACCATTCCCTCCTGTCCTTCCTCAGCAGCTGTGACCACCGGCCAGAGTACCAGCTCCTCTACAGTGCCTACCCGGAGTTCCTCCTGCTGCACTTTGAGGGCTATTCTGATGAGGAGGAGCTGGTGGCATACATAAGTGATGCTCGGGAAACAGCAAGAAAAAAACGCATGTCTTGGGCACAAAGTAGACTCTGCTTTCTTCTGGGACAGCTCTGTGCGGGCAGGTCCAAATTCTCCCAAGCTCGGGTCTATTATGAAGAAGCCTTGAGTGTACCCAGAGACTATTTCACAGACATGCACCTTCTCTCTGCTCTCTATTCCAACCTGGCCCTCATCTATCTCactcagaaaaacacagagaagtaTTTCGCCCTGTCTGAACGCTACACTGCTGTATTGATGGCAGTCTGTGACTGTTTATCTGGCTCAGAAGACCCTGATGTTGTAAAGTTTGCATTAAAAAAGGCGATTCTGTCTGGGAACAAGCCAGCAGAAGCCCGGCTCTGCCTCCTGTTAGCCAAGCTCCATTTGAAGCTTGGAGAGGGCATGAACGCCTTGCCTTTCCTTGAACGGCTGCAGATTTTAGCTGATGAGATACCAGGAGCCTGTGAGAAGATAAGGAGCCATGGTTTCTTACTCTTAGCGAGGCTTTTTAGTGACCATCATCTTACTCACCTGGCTGAGAGCTCAGCAAGACAAGCATGTATACAGGTGTCATCCTCTGTCACTGACTGTTTCTGTAGCATCTCTCTGCTGTTGGAGAACGCTCAGGAGTTGTATGGAGTTGACATCCCGACACAAGTGGCCCCGTGTTTGATGCGAGCTGCTGCTATGTCTGATAGTTTGGAAACCAGTATGGAAGCCAGCCTGGCTCATGCTCATGCGCTGTGCCTGTCATGGCTTTTTCAGGATCATGGCATGCCTGACAGAGCTATTCACTACATGTGCAGCCTCTTCATCCACGCATCTGCTTCCAGCCTCAGCCAGCATGACACCAGCAGTTCTCTCATATGGCTGGCCTGGCTGCATATCTGTGGCCTGCAGCACCGTGCTGCACTGGAAATACTGGATGCAGTGCTGTCCACTCTCCCTGAGCACTGCACCACCCAGCTGGAAGGGGTGGTCTACAACATGCGGGCCATCGCCCTGAGGCATTCCGGCAATGTGAAAGAGGCTGCTGAGGGTTTCCAGGCTGCGGCTGAAGTCTCCGAGGAGTTTGAAGACAGGAGCAACTGGGCCATAGCCCTGGCCAACTTTGGCTTCTTGTGTCTACAAGTGAACGCCAAGAGGCTGGCTGAAGAGCACCTCACACAGGCAGTGGAGCTGTTCTCTGAGTTAGAGGATGATGAAGGCCATGCACTGAGCTTTGGTGCTGTGCTTCTGGAGCTGGGAAAGTTCTACGTGTCACAGGGTTTCTGTGAGAAAGGGAAAATCTGCTATGAGTGGGCCTTGCTGATTGCCATCCTCAATGATAGCTCAGAGAGTCAGCTGCAAGCCACCCGTCAACTGTGTCACCTGTATGGAgaagtttgcccagatgaagcACAATGCATCATATATAATGAGCACCAGCTGAACCTGCTGCACCAGAGAGGAGACAGAACCCTGGAGGGGGAGATACTGGAGAAGATCAGTCAGCTGTATCTGAGCCTGGGCACAGAGAGGGCAAACAGAACTGCACTGGACTACACCAAGAGAAGTCTGGGGATCTTCATTGACCTGGggaagaagaggaaggaggCTCATGGTTGGCTACAGGCAGGAAAAATCTACCATATCCTCCAGCAGAGTGAGCTGGTGGACCTTTATGTACAGGTTGCACAGGACATTGCTCTGAGCACAGGAGATACACTCTTCATCCTGGAGCTGCTAGAAGCAGCAGGTGATGTGTTCTTCAACAGTAcacaggaaagagagaaagccaTCTGCTTTTACAGGGATCGTGCTCTCCCCATCGCGGTAAAGTCGAGCAGTGTGCGTTCTCAGCTCAGGCTGTGTAATAAGCTAGCCGAGTTGCTGCTACAGTTGGGACAGTATGTGGAGGCTGTGGAATATGCACAGACCGCACTGGACATGAGCATAAATCTTGCTGACCGTTTAAATGAGCGAGTGGCGTTTCATCGCCTGGCTACACTGTATCACTGTCTGAGTCGGTTTGAGATGGCAGAGCATCACTTCCTGAAGGCCCTCTCCCTGTGTCCTTCACCCCTGCAGTTTGATGAAGAAGCTCTTTACTACGTCAGGGTGTATCAGACACTAGGGGATATCATCTTCTATGATTTGAAGGATCCATTCGATGCAGCTGGTTACTACCACTTAGCCCTGGCAGCTGCTGTGGACCTGGGCAATAAGAAATCCCAACTGGAGCTCTGCACTCGCCTGGCCACTATTTACCACAACTTCCTGATGGACCGTGATCTGTCCCTTCAGTTTTACCAGCGCGCACGAGCCTTCGCCTCTGACCTCAACATCCGCCGCATCAACCTGGCTCCAGATCAGAGCTTCAGCACTACATCCCAGTACAAAATCCCAGCCTTGCAGGCATCGAAAGAGACCTGAACTGTTCTTCACGGCTTCTTTAAACTGACTTGTATTTGAGAGTCTGTGTTTACTTTCTTCTAGCAAATTTTGCGTACTGCTTGATTTTctaatgtctgtgtttttgtaaTCAACATACCCCAGTAGTGAGAAAATCTACTGTCATTGCATTGATGAGCATCAAACCTGTGTTTTTTCCCCAGTCAGTTTTAGTTGGAGCGTTATCCAGATGATAAACTGTAAATGTATGGCACAAATCACAGAATGactttttacaaatatattaaaaaaaaagaattaattaaaaatatatggaatttttatttaaatgctattttctaGTTCAGAGCCTAATGACATAGTggttttatttagaaataaattaacattttatttattttaaaatgtgaactCAATGGCACAcatacattaacacacacacaaacaattgctttattgtgtttaatgcaACACTCTCCgtaaaacctttatttagcaAATAAAGAGTTTGTAAAAATCTTATAACCATTGACTAAATTATgatattgtaataaaatgtttgcGAGCCCAGTAGAACACATAAAAATGCATTGGGTCATATGCAATGTGCAAGGTGTTTATTAAATTCCAGTTCCGAttgcaaaaaaaa
>XM_015605541.2
GCTGACAAGAACACACAGGAAGTCCTCTGCGGGAAGCTACGCATGCTGGAGGCTGACCTCACCAAAATCACAACCCTGATTGATgctCTTTTTTTGGGAGCTGTACGGTTAATCAGATGTTCGACAGCTCCACATCAGGCAGTGACCTTTACCTGGAGCAGGGGGACATCGCTCTGTTTGAGCCTCCTTTCCTAGGCTCAGGATGGACTGTGCTGTCCTTGGCAGATGGATCAAGAGGAACTAAACCGAGGCCAGCCCTGGAACCAGTCATTCCTTTTCATGAGTGGTTTCTGAAATCCTGTCCTGAGAGTGTTTTGGTTGGCAGTGGAAAGACAGGCTGCAATCTCCCATTCCAAATGGCTGTAGGGATCTGCGAGGCAACAGAACTGTATGATGGTAACGGACCAGACGAGCTGAGTTTTGAGGCTGGTGATCGCATCATCATCCTAGGCCTACTAGTGACCTGCTTTGAGTGGTTTATGGGCAAGCTGGAGCGGACTGGTGATACAGGACTTGTCAGGACGACCCTGGTGAAAGCAACAGATTCTCTTTGTGAatCAGAGGAAATTTTTTTGAAAGACGAGGATAGAACAATCTTTAACCTGAACCAAGAAAAGATCAAGGAGGAAACAATTGCTTTTCTGAAGAAGACATGCCAAAGTGATGCTGCTACTGTCTACAAACTTGATTTGGCAAAGCCAGAATCATTTCAAAATAATTCCAATGCAGACATTGTTGATCATGTTGAAATGTACGCAGACCTGAGAAGAAAAATCACCAGCGTTTTGATTGAGACAAAGGAGCCAAATAGAAGTGAGAGCTTGCTGGGCAGTGCTGGTCTCCAGACTGATTCAAAGTCCACCGAGAAAGAGTCATCCCAGGAAATCCCTCATTTCACTGTGTGTTTAGAGCAGGGTGGTTCCAGCCCAGATGGACACCATTCCCTCCTGTCCTTCCTCAGCAGCTGTGACCACCGGCCAGAGTACCAGCTCCTCTACAGTGCCTACCCGGAGTTCCTCCTGCTGCACTTTGAGGGCTATTCTGATGAGGAGGAGCTGGTGGCATACATAAGTGATGCTCGGGAAACAGCAAGAAAAAAACGCATGTCTTGGGCACAAAGTAGACTCTGCTTTCTTCTGGGACAGCTCTGTGCGGGCAGGTCCAAATTCTCCCAAGCTCGGGTCTATTATGAAGAAGCCTTGAGTGTACCCAGAGACTATTTCACAGACATGCACCTTCTCTCTGCTCTCTATTCCAACCTGGCCCTCATCTATCTCactcagaaaaacacagagaagtaTTTCGCCCTGTCTGAACGCTACACTGCTGTATTGATGGCAGTCTGTGACTGTTTATCTGGCTCAGAAGACCCTGATGTTGTAAAGTTTGCATTAAAAAAGGCGATTCTGTCTGGGAACAAGCCAGCAGAAGCCCGGCTCTGCCTCCTGTTAGCCAAGCTCCATTTGAAGCTTGGAGAGGGCATGAACGCCTTGCCTTTCCTTGAACGGCTGCAGATTTTAGCTGATGAGATACCAGGAGCCTGTGAGAAGATAAGGAGCCATGGTTTCTTACTCTTAGCGAGGCTTTTTAGTGACCATCATCTTACTCACCTGGCTGAGAGCTCAGCAAGACAAGCATGTATACAGGTGTCATCCTCTGTCACTGACTGTTTCTGTAGCATCTCTCTGCTGTTGGAGAACGCTCAGGAGTTGTATGGAGTTGACATCCCGACACAAGTGGCCCCGTGTTTGATGCGAGCTGCTGCTATGTCTGATAGTTTGGAAACCAGTATGGAAGCCAGCCTGGCTCATGCTCATGCGCTGTGCCTGTCATGGCTTTTTCAGGATCATGGCATGCCTGACAGAGCTATTCACTACATGTGCAGCCTCTTCATCCACGCATCTGCTTCCAGCCTCAGCCAGCATGACACCAGCAGTTCTCTCATATGGCTGGCCTGGCTGCATATCTGTGGCCTGCAGCACCGTGCTGCACTGGAAATACTGGATGCAGTGCTGTCCACTCTCCCTGAGCACTGCACCACCCAGCTGGAAGGGGTGGTCTACAACATGCGGGCCATCGCCCTGAGGCATTCCGGCAATGTGAAAGAGGCTGCTGAGGGTTTCCAGGCTGCGGCTGAAGTCTCCGAGGAGTTTGAAGACAGGAGCAACTGGGCCATAGCCCTGGCCAACTTTGGCTTCTTGTGTCTACAAGTGAACGCCAAGAGGCTGGCTGAAGAGCACCTCACACAGGCAGTGGAGCTGTTCTCTGAGTTAGAGGATGATGAAGGCCATGCACTGAGCTTTGGTGCTGTGCTTCTGGAGCTGGGAAAGTTCTACGTGTCACAGGGTTTCTGTGAGAAAGGGAAAATCTGCTATGAGTGGGCCTTGCTGATTGCCATCCTCAATGATAGCTCAGAGAGTCAGCTGCAAGCCACCCGTCAACTGTGTCACCTGTATGGAgaagtttgcccagatgaagcACAATGCATCATATATAATGAGCACCAGCTGAACCTGCTGCACCAGAGAGGAGACAGAACCCTGGAGGGGGAGATACTGGAGAAGATCAGTCAGCTGTATCTGAGCCTGGGCACAGAGAGGGCAAACAGAACTGCACTGGACTACACCAAGAGAAGTCTGGGGATCTTCATTGACCTGGggaagaagaggaaggaggCTCATGGTTGGCTACAGGCAGGAAAAATCTACCATATCCTCCAGCAGAGTGAGCTGGTGGACCTTTATGTACAGGTTGCACAGGACATTGCTCTGAGCACAGGAGATACACTCTTCATCCTGGAGCTGCTAGAAGCAGCAGGTGATGTGTTCTTCAACAGTAcacaggaaagagagaaagccaTCTGCTTTTACAGGGATCGTGCTCTCCCCATCGCGGTAAAGTCGAGCAGTGTGCGTTCTCAGCTCAGGCTGTGTAATAAGCTAGCCGAGTTGCTGCTACAGTTGGGACAGTATGTGGAGGCTGTGGAATATGCACAGACCGCACTGGACATGAGCATAAATCTTGCTGACCGTTTAAATGAGCGAGTGGCGTTTCATCGCCTGGCTACACTGTATCACTGTCTGAGTCGGTTTGAGATGGCAGAGCATCACTTCCTGAAGGCCCTCTCCCTGTGTCCTTCACCCCTGCAGTTTGATGAAGAAGCTCTTTACTACGTCAGGGTGTATCAGACACTAGGGGATATCATCTTCTATGATTTGAAGGATCCATTCGATGCAGCTGGTTACTACCACTTAGCCCTGGCAGCTGCTGTGGACCTGGGCAATAAGAAATCCCAACTGGAGCTCTGCACTCGCCTGGCCACTATTTACCACAACTTCCTGATGGACCGTGATCTGTCCCTTCAGTTTTACCAGCGCGCACGAGCCTTCGCCTCTGACCTCAACATCCGCCGCATCAACCTGGCTCCAGATCAGAGCTTCAGCACTACATCCCAGTACAAAATCCCAGCCTTGCAGGCATCGAAAGAGACCTGAACTGTTCTTCACGGCTTCTTTAAACTGACTTGTATTTGAGAGTCTGTGTTTACTTTCTTCTAGCAAATTTTGCGTACTGCTTGATTTTctaatgtctgtgtttttgtaaTCAACATACCCCAGTAGTGAGAAAATCTACTGTCATTGCATTGATGAGCATCAAACCTGTGTTTTTTCCCCAGTCAGTTTTAGTTGGAGCGTTATCCAGATGATAAACTGTAAATGTATGGCACAAATCACAGAATGactttttacaaatatattaaaaaaaaagaattaattaaaaatatatggaatttttatttaaatgctattttctaGTTCAGAGCCTAATGACATAGTggttttatttagaaataaattaacattttatttattttaaaatgtgaactCAATGGCACAcatacattaacacacacacaaacaattgctttattgtgtttaatgcaACACTCTCCgtaaaacctttatttagcaAATAAAGAGTTTGTAAAAATCTTATAACCATTGACTAAATTATgatattgtaataaaatgtttgcGAGCCCAGTAGAACACATAAAAATGCATTGGGTCATATGCAATGTGCAAGGTGTTTATTAAATTCCAGTTCCGAttgcaaaaaaaa

Function

symbol description
sh3tc1 Orthologous to human SH3TC1 (SH3 domain and tetratricopeptide repeats 1).

NR:

description
PREDICTED: SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

GO: NA

KEGG:

id description
K24313 SH3TC; SH3 domain and tetratricopeptide repeat-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248009.3 True 4630 mRNA 0.47 18 31656834 31678546
XM_015605541.2 False 4122 mRNA 0.47 14 31656834 31676371

Neighbor

gene id symbol gene type direction distance location
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding downstream 1725 31642324 ~ 31655109 (-)
LOC111194360 NA coding downstream 62447 31592291 ~ 31594387 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding downstream 84009 31566918 ~ 31572825 (-)
slc7a7 slc7a7,LOC107738042,LOC107683525,LOC107558406,LOC107731885 coding downstream 110574 31528602 ~ 31546260 (-)
LOC103021832 NA coding downstream 138849 31512315 ~ 31517985 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding upstream 30657 31709203 ~ 31716725 (-)
trnae-uuc_21 NA coding upstream 378251 32056797 ~ 32056868 (-)
arap2 NA coding upstream 2154788 33833334 ~ 34001620 (-)
paqr9 paqr9 coding upstream 2401708 34080254 ~ 34088604 (-)
LOC111194385 NA coding upstream 2424213 34102759 ~ 34109347 (-)
G145956 NA non-coding downstream 573 31655855 ~ 31656261 (-)
G145937 NA non-coding downstream 29882 31624728 ~ 31626952 (-)
G145929 acox3 non-coding downstream 51384 31599496 ~ 31605450 (-)
LOC111194380 NA non-coding downstream 65858 31585072 ~ 31590976 (-)
G145917 NA non-coding downstream 95551 31560978 ~ 31561283 (-)
G145998 LOC108428553,LOC106608959,LOC103364796 non-coding upstream 24748 31703294 ~ 31704834 (-)
G146002 NA non-coding upstream 40058 31718604 ~ 31783241 (-)
G146004 NA non-coding upstream 58251 31736797 ~ 31739846 (-)
G146003 NA non-coding upstream 59150 31737696 ~ 31739112 (-)
G146005 NA non-coding upstream 78554 31757100 ~ 31757658 (-)
LOC103035326 sall2 other downstream 98373 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 154173 31499916 ~ 31502661 (-)
G145899 NA other downstream 170764 31483943 ~ 31486070 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 429256 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 1006528 30644395 ~ 30650306 (-)
cckar cckar,LOC106608554 other upstream 192511 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1421751 33100297 ~ 33105587 (-)
LOC107197333 NA other upstream 2106549 33785095 ~ 33785421 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 2551374 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 3726352 35404898 ~ 35435707 (-)

Expression


Co-expression Network