tkfc (tkfc,LOC107094664)


Basic Information

Item Value
gene id tkfc
gene name tkfc,LOC107094664
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31407362 ~ 31417706 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248023.3
CAGTCTATTGCTCTCATGGTGGGCGGGAGCTGCACCGTCTGGGGCAAAGACCACTCACTCACTTCCCTCACTGTCTTAACTAACTGCTGAACTACCTAGTGGACGGACTGCGGAGGCATGGAGGTGCCCAAAAAGCTGCTGAACTCCGTGGAGAGGTGTGTAGACGAGGCTTTGGAGGGGATTGTCTGCAGCAATGGAGGTCTGGTGCTTCTGAAGGGTCACAGGGTGGTTCTCAGGTCTGACCTCGAGCTCCTAAAGGGGAAGGTGGCACTTCTGTCAGGTGGTGGTTCTGGACATGAACCCGCACATGCAGGCTACGTTGGCAGAGGGATGCTCTCAGGAGCTGTTGCAGGGTCAGTGTTTGCCTCTCCACCTCCAGGCAGCATTCTGGCAGCCATCATGACCCTTTGGCAGAGTGGTGTTTCAGGTGTTCTGCTGCTGGTGAAGAACTACACAGGAGACCGTCTGAATTTCGGGCTAGCTGCTGAACAGGCACGAGCACAGGGAGTCTCTGTGGACATGGTGATTGTGGCAGATGACTGTGCCTTCACCCAACCCAGTAAAGCTGGTAGAAGAGGACTGTGTGGCACAGTGTTCATTCATAAGTTGGCTGGAGCACTGGCTGAAGAAGGCTGTGCACTAGATGTAATCGTTGCCCAGTTGACAAAGGCAAAAAAGAGCGTTGgCACCCTTGGCGTCAGTCTGTCACCATGCAGTGTACCAGGATGCCTACCCTCCTTTCAGCTTCCACCTGGAGACATGGAGCTAGGACTAGGGATACATGGAGAGCCAGGGATTAAAAGGTCCAAGATGGCATCTGCTGATGAAGTTGTGAAAACCATGATTGATCACATGACTGACCcatccagccaatcacatctgCCTCTAAAATCAGgtgACACTGTGATTCTCTGTGTGAATAATCTTGGTGCTCTGTCCAGTTTGGAGATGGCTGTTGTCAGCAGAGCTGCCATTAACTGCTTATCGGGGCGTGGAGTGGTGGTTGCCAGGGTAATGTCAGGCTCATTCATGTCATCACTGGAAATGGCGGGTGTGTCTCTGACTCTGATGAGGGTGGATGAGGAGATACTCCGACTGTTTGATGCTAAAACCACAGCCCCAGCGTGGCCAAACCTCAGCAGTGTGATTCTGAGTGGGAGGACAATGTACGTGGAACCCGCAGAGAGACCAGCTGCTTCTGAGACAAAGCCTAACCAAgGTCCTTTAAGTTTGGTGATACGTCCAGTTTTGGAGTCTGTGTGTAAAGTTCTCCTGCAGCGACAAGAGGAGCTCAATGCACTGGATCGTGCAGCAGGTGATGGAGATTGTGGGAGCACACATGCCCTTGCTGCTAATGCTATTCAGGATTGGATGCAGACAAGCACAGTGCCCGGAAATCCATGCCTTCTGCTAACAGCTCTTGCTCGATTGGTGGAGGAAAAAATGGGCGGCTCTTCAGGAGCGCTGTATAGTCTGTTCCTGACAGCGGCTGCTCCCAAGCTGAGAGAAAGCTGGAGTGGGGCTGACTGGGCCAAAGCATTGCAAGCTGGTACTGAAGCCATGAAAAGATATGGTGGTGCTGAGCCTGGTGACAGGACTATGCTGGATGCATTGTGCCCTGCTGTAGAGGAGCTGATGAAGTTGTTGACTGCACCTGGTGACCATATGGCTGTACTACAGGCTGCAGTGGAGAAAGCAGAATTGGGTGCAGAATCTACCCGTGATCTTACAGCCAAGGCAGGCCGGGCAAGCTACATTGCATCTGAGCGCCTGACCAAGCCGGACCCTGGTGCTGTGGCTGTGGCTGCCATTTTCAGAGCAGTGTTTGAGGCTCTGGGAGGGAAAAGCCACTGATCTTTGATGGTACAACGGAAGcctgaagagagaaaaaactctATATTGTTTTGGAAAAACCACACATATACAATAACTGATATAACAGTAATGGTATATTATACTATTATCGAAATTCATAAACACAAATCATTTATTAATCAGTGATAAGTTTGAGATGTATGAAAAATGACGAATAGTAACCATTCTTTCATAGGTAAAGGAATGTATAATTTCTTCCTTTTAAATCAGCTGCATAATGTTGACTGTTAAACACATGGGCTTTATAGTTCCATTCCCTTCCATTCTCTATACAAGCCCAAATTATCTACCATGTTTTCAAATTTGCAGCCAGTGGAAGAGACTGATTCAGCTACTCATGTAGTAGAGGCTGTAAACCTGCTCCTTTTCCCAAAAGAAGCATCTCTGACTGTGTTCATTGAGTATACAATTCTTGTATCTTATAACAAACCATTTACACTTCAATTTAATGACAGTACCAGAGCTTAACTCTGTTTGCTTTGTTTACTTCTTAGATTAACTGAAGCTACTACAGTCTAGTTGATCCCAGAGCTTCTGCTAAAGATTAAGCGCACACTTCTTATAGAATAAATAAGaatgttttaaactgaatttgGTCCTGGTCCAGATTAGAAAAAACTGGCGAGAGTGTTGTCTAACtaaactaatgttagctaactggctaacaACTAATTTGATCACAATTACCATTTTACACTAACaccagtttagttttttttttcattgtctaTTAATCCAaccaacaacacaacacaaaatgaccAATAATAGCAGGATTATTTAGCTAGTTGCCTACAACTTAGCTACTCCATATAATGAACAGTAAGGATGGGTCTATGGTCTGTTCAATCCAAGGCTGTCAGTTACTTCTTTATAAGTTTTACCCCACCTTTTTATAATATAGCAAAGTCttgttttaaaaactactttctatagtaaaaataaaaagtgccaATAATATCACAGGGAAACCTAACTGTTGGAATTTAACACTGGAGATAagaaagaaatgtattttaagcaaaacatttggggatgagttgagctacacatcatactaCACCTAGTCTGCAGGGGGGTCCCATGGGGTGGTTTCCCTTTAAGAGAAGCATTGTTCATGTTTTTCTACAGTCAGTTATTCCAACTACCGGTATTTGAACTCTGAATCACTCTTCTtgtgaaaatgatacatgatgAACAGAATCATTAATTTTGTTATTCAGATGAGGTAAGAACTGTGCAGACAGTTTATTGACTGAAATAGGACCATGAAAAAGAGATTTGCTTGTGACTTAAATGCACTTTAGGTCAATTAAATTCCGTAATggagaacaaaaaaacatatagaagCTTGAATGTGAAAGTTGTTTAAATGAGTAAATCACTAACATTATTGAACCTAATAAATTAACTCAGCAAATTTAa

Function

symbol description
tkfc Predicted to enable glycerone kinase activity. Predicted to be involved in glycerol catabolic process. Predicted to act upstream of or within glycerol metabolic process and phosphorylation. Predicted to be active in cytosol. Orthologous to human TKFC (triokinase and FMN cyclase).

NR:

description
PREDICTED: bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing)

GO:

id name namespace
GO:0006071 glycerol metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004371 glycerone kinase activity molecular_function

KEGG:

id description
K00863 DAK, TKFC; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248023.3 True 3300 mRNA 0.44 16 31407362 31417706

Neighbor

gene id symbol gene type direction distance location
LOC103037388 LOC103037388,LOC108434601,LOC108267726,LOC107675486,LOC105895467 coding downstream 2004 31386254 ~ 31405358 (-)
LOC103038032 NA coding downstream 23053 31375693 ~ 31384309 (-)
ovol1 ovol1,LOC103038355,LOC108434587 coding downstream 38666 31361438 ~ 31368696 (-)
mus81 mus81 coding downstream 48150 31350210 ~ 31359212 (-)
LOC103038661 LOC108434603,LOC107595313,LOC108268335,LOC107731925,LOC793560,LOC107675495,LOC107738035,LOC107683530 coding downstream 57413 31340630 ~ 31349949 (-)
LOC103021832 NA coding upstream 94609 31512315 ~ 31517985 (-)
slc7a7 slc7a7,LOC107738042,LOC107683525,LOC107558406,LOC107731885 coding upstream 110896 31528602 ~ 31546260 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding upstream 149212 31566918 ~ 31572825 (-)
LOC111194360 NA coding upstream 174585 31592291 ~ 31594387 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding upstream 224618 31642324 ~ 31655109 (-)
G145798 LOC108434604 non-coding downstream 114973 31287506 ~ 31292389 (-)
G145777 NA non-coding downstream 240614 31166297 ~ 31166748 (-)
G145776 NA non-coding downstream 242677 31162519 ~ 31164685 (-)
G145775 sat2,LOC104927601,LOC100692450 non-coding downstream 246361 31158374 ~ 31161001 (-)
G145759 NA non-coding downstream 260873 31145961 ~ 31146489 (-)
G145895 NA non-coding upstream 63866 31481572 ~ 31481995 (-)
G145902 NA non-coding upstream 72117 31489823 ~ 31490380 (-)
G145917 NA non-coding upstream 143272 31560978 ~ 31561283 (-)
LOC111194380 NA non-coding upstream 167366 31585072 ~ 31590976 (-)
G145929 acox3 non-coding upstream 181790 31599496 ~ 31605450 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 179784 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 757056 30644395 ~ 30650306 (-)
G145141 NA other downstream 2463301 28938993 ~ 28944061 (-)
G145135 eif4a1,if4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC105895537,LOC107098142,LOC108415734,LOC105007919,LOC106560692,LOC106602896 other downstream 2514364 28886240 ~ 28892998 (-)
G145101 NA other downstream 2591228 28812741 ~ 28816134 (-)
G145899 NA other upstream 66237 31483943 ~ 31486070 (-)
LOC103036756 LOC103036756,LOC108434598 other upstream 82210 31499916 ~ 31502661 (-)
LOC103035326 sall2 other upstream 132823 31550529 ~ 31558461 (-)
cckar cckar,LOC106608554 other upstream 453351 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1682591 33100297 ~ 33105587 (-)

Expression


Co-expression Network