ovol1 (ovol1,LOC103038355,LOC108434587)


Basic Information

Item Value
gene id ovol1
gene name ovol1,LOC103038355,LOC108434587
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31361438 ~ 31368696 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248025.3
GCCATCTTCCCTGCTATAGTTGTTCTCTAGCCGCCTTGAGGATGAATGGGGACTTGAGGTGTGTGCgtgggggagagagaaagagagagagagagaaaaccggTTGAACAGGTAAAACGTGGAGGCAGGTCTGGCTGGGGTTTGTTGTCACCGTTATTTCCAGGCGCATGCGCGCTGCCACCTGTTTCCTCCTGAAATGTGTAGCCTACCTGCGCCGCACTCCACCTTTGAAATTCACCTCGACTGAACGCCTCGGCATATTTCCTACACCGTGCTCCGTTAGCAGAGGCCGCTCGGAACGGGATATTTAGAGCTCTGGGACTTTCTGGAAGCTAGAGGGGACACTGGGACTAAGACTTTTCTTGGGACAATCTACGAGAACCTGTATCCTATAGGTGGAAAAGTTTACAAAGGGAATCCGGAGGAAGGAGAGAACAGAGGGAGGACAGAAACTCTCCAAGATTACTCTTTTTTACATGCTCACCTGACGCCCCCGACTAGGCCaaagacttttattattttttctctcctgtacagacagtttttattctgattaacaAATAATTGCACAGCCTGGAGCTCGGTTGTTACTTCAGTAGGAGATAGCGGAGATCAACGCACACCATGCCGCGAGCTTTCCTCGTGAAAAAGCCTAGTGTTTCACCGGGCAAGAGAAGCTGGAGTGACCTGCCTGACCATGAGCGAGGAGACATCTACATACCAGTGTCTGTGACCCCTCCAATTCTATGGGAAGAGACAGAGGCCAGTGTAGCCGAAGTGGCCCTGTGTTTGTCCACTCGCAAAGAACACATCATGTGCACTCAGAAGTACACGCAGGACCAGCACACAGTGGTTTCTACAGCTGAACTGCCTTCCTGTACATCTCTAGGACAGCATCCCAGTCCAGAGACAGAGCGCATAAGGAGTTCACAGAACAGCTCATATGTCCGCTCCAAAATCAAGGTGACCACTGGTGATCCCCCTGTCGAAGCTTTTCCAACCATTCCAAGTGTAGCAACTGCTTCTCCTGATGCTGTCTCAAGCCTCAGCCCAGCAAGCAGCTCTGGCACATCTTCAGCACCTTCAACCCCTGTACCGAGTGGGAAGTTTGTGTGTCAGGTGTGCCagaaggtgtttcagtttcagcgTATGCTCAACAGACACCTAAAGTGCCACAGTGAACAGAAAAGGCATCTTTGCACTTTCTGCGGAAAGGGCTTTAACGACACCTTCGACCTCAAGAGGCATGtccgcacacacacagGTGTTCGTCCGTATAAATGTAATCTGTGCGAGAAAGCCTTCACGCAGCGCTGCTCTCTGGAATCACACATGAAGAAGATCCATGGCGTGACCCAGCAATATGCCTACAAGGAGCGGCGCACCAAGCTGTATGTCTGCGAGGAGTGCGGTCACACCGCACCTACCCAGGATTCACTGCTGCGCCACCTGCACACCCAGCATCCAAACAGTGCCTTCTTGCGGGCCAAGGCTGCACGAAGGCaggctggggcagcaggtgacGCTGCTCTGGAAGAAAACTCCCTGCCTGGTTCTCCTTTATCCCTGAACAGTGATGACACAGCAGGAtcagaaatgtagaaatgtatgtatttagatttaatttagGCCAGTAAGGGAGACTCCTGGAATTCCTGCAATTTTGTGTAACCTCATTTAAATGGAATATTATGTAGGAAGAAAAGAAGGATCAGAAAcaaaagtagagagaaaactaaaagatacactaaatatacatatttgtcTTTCATTGTCATGCTATACTACATTAATTCACTGACTGTGTTTTAAACAGCTGAGACAGCTGTAGTTTACACTTACACTACAGATGAGAGCTGGTTCTTCCCTTTGAAATGAGTAGATGACAAAATGGTACATGATACTTATTTTCTACTTGAGTTTACATCAATATTTTGCTTTCTTTGAGAGAAACAAGTAAAATATCACAGATGTATATGCAataaatgttctgatttttttaCTCAGGGCAGACACAGTTATACAGAAGTGCCTTacttttcttatgttttattttttccttttctttggaTGTGAGGAATATTGAAGGGGATTTTTGGTCAATGATTATTGATGTTTGTACAGACTTGACAGATGTGttgtaaaaaataagatttctaTTTATACCAGGGGGTTTGTAATGTTCTTGGTGGAGTTTCTCCTTTGTTCcagattttatacatttaaaataacgtGTAATGCATTGTATGTATTTTGGACATGTTTTGACTGTTTTGAAAGGTTGCACAACAATTAATGCTGGTTTGTCTTCATACCACATATTCTGACAATATCGAAAGAACGCACAACATTTAAAGCTAGTTTGTCTTAAAGCCACATATTCTAAACAGAAGCagatgaatatataaatatattctattctatatatAAAAGGTATTGATTTGAATGTGCTTTCTAAACAGGAAAATAAATGTGTCcctttattttatgcta

Function

symbol description
ovol1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in epidermal cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including negative regulation of stem cell proliferation; negative regulation of transcription by RNA polymerase II; and regulation of meiotic cell cycle. Predicted to be active in nucleus.

NR:

description
putative transcription factor Ovo-like 1

GO: NA

KEGG:

id description
K09216 OVOL; ovo

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248025.3 True 2493 mRNA 0.44 4 31361438 31368696

Neighbor

gene id symbol gene type direction distance location
mus81 mus81 coding downstream 2226 31350210 ~ 31359212 (-)
LOC103038661 LOC108434603,LOC107595313,LOC108268335,LOC107731925,LOC793560,LOC107675495,LOC107738035,LOC107683530 coding downstream 11489 31340630 ~ 31349949 (-)
LOC111194379 NA coding downstream 51126 31307953 ~ 31310312 (-)
LOC103041559 fis1,LOC108434607,LOC107738082,LOC107597091,LOC107702049 coding downstream 102713 31253477 ~ 31258725 (-)
LOC103041259 cldn15,LOC103041259,LOC108434589 coding downstream 112476 31243872 ~ 31248962 (-)
LOC103038032 NA coding upstream 6997 31375693 ~ 31384309 (-)
LOC103037388 LOC103037388,LOC108434601,LOC108267726,LOC107675486,LOC105895467 coding upstream 17558 31386254 ~ 31405358 (-)
tkfc tkfc,LOC107094664 coding upstream 38666 31407362 ~ 31417706 (-)
LOC103021832 NA coding upstream 143619 31512315 ~ 31517985 (-)
slc7a7 slc7a7,LOC107738042,LOC107683525,LOC107558406,LOC107731885 coding upstream 159906 31528602 ~ 31546260 (-)
G145798 LOC108434604 non-coding downstream 69049 31287506 ~ 31292389 (-)
G145777 NA non-coding downstream 194690 31166297 ~ 31166748 (-)
G145776 NA non-coding downstream 196753 31162519 ~ 31164685 (-)
G145775 sat2,LOC104927601,LOC100692450 non-coding downstream 200437 31158374 ~ 31161001 (-)
G145759 NA non-coding downstream 214949 31145961 ~ 31146489 (-)
G145895 NA non-coding upstream 112876 31481572 ~ 31481995 (-)
G145902 NA non-coding upstream 121127 31489823 ~ 31490380 (-)
G145917 NA non-coding upstream 192282 31560978 ~ 31561283 (-)
LOC111194380 NA non-coding upstream 216376 31585072 ~ 31590976 (-)
G145929 acox3 non-coding upstream 230800 31599496 ~ 31605450 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 133860 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 711132 30644395 ~ 30650306 (-)
G145141 NA other downstream 2417377 28938993 ~ 28944061 (-)
G145135 eif4a1,if4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC105895537,LOC107098142,LOC108415734,LOC105007919,LOC106560692,LOC106602896 other downstream 2468440 28886240 ~ 28892998 (-)
G145101 NA other downstream 2545304 28812741 ~ 28816134 (-)
G145899 NA other upstream 115247 31483943 ~ 31486070 (-)
LOC103036756 LOC103036756,LOC108434598 other upstream 131220 31499916 ~ 31502661 (-)
LOC103035326 sall2 other upstream 181833 31550529 ~ 31558461 (-)
cckar cckar,LOC106608554 other upstream 502361 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1731601 33100297 ~ 33105587 (-)

Expression


Co-expression Network