LOC103036164 (LOC108434831)


Basic Information

Item Value
gene id LOC103036164
gene name LOC108434831
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39126899 ~ 39137179 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250166.3
AACTTGCTAGAAATGTGTTTACTGTAGACATCACATGATCAGTGGGAACGCATAAGCCAGCAATTACTAATACATACTGACAGAAGCCAATACTGTGATCAAGATTTAAAGGACCTCAGCACCTGAAAAGCATGGACAGAGAAAGCCCACCCCTGCTGTTGAGAGTGGTACGGTCTCAGCCTGGTCAAGTAGTTGAGGAGGAGCAGTGGAGCACTGGACTGTGTGAATGCTATGGAGATATGGGTGACTgtTGCTTTGCTCTCTGGTGTTTGCCTGTATTTGCGTGTAAGACGAGCAGGGCCGCAGGAGGCTGTGTTTGCTTGCCTCTGCTAGACTGTGTGGGCTGTGTGCCTCCAGCCTCCCTCGCAATGCGTGCAGCAGTGAGAGAGCGCTATGGCATaaaggGCAATGTGTTCAGTGATTGTTTCTATGGCTGGTGCTGTTATCCTCTGTCCTGGTGTCAGATCTccagagagataaagaagagGACGGCCGCGCTGTCCAAAAAACAGTCTTCCTCACCTTTCTCTTTAAAATCAAAAACCCGGAACACACCTCTTCTCTACCTGGATCACGTCCACATCATTTAGAGTACATGGAGGACAAAAGCACCTTTTACAGCAGCAAACAGCTGCTTTCAAGAGCCGGGACAATCTTCAGTGCAAAGAGAGGGAGTGTTTTGTATgaagtgaattttgtgccaaaagttttatgctaaaaaataaaatccacagtcaaaacacaaaaatgaaagcaaagactggaaAAATACCTACTGAAatcattttcaaataactgcaaagaataatagTAAACACGTATATTTAAATACGTATTTGCtatattttttcctcttttgattcttaacattttgattgtaggctttatttgattttttgcaTAAAAAACCTTTGCCACTAAATTCACTCCATAGTTTTGTTACATTagtaacaaaatatttgtaaatgtgTGAGTTTCTCAAATCAGTTAAAATTAGTGCAATATTAGCTCAAATTCTGTTGTTTCTTTGTCCACTTTACTAAAGTGTTATTTAGAAAATAAGAGGGAGATAAAGAGATGTAAATagaaaaagagtgagtgagtgagtgagacatAGGGAAAGATAGGGAGtaaaagagtgtaaaagagtgagtgagtgaatattagtgagtgagtgaggcaTAGGGAAAGATAGGGAgtaaaagagtgagtgagtgagtgagtgagtgagacatAGGGAAAGATAGGGAGTaaaagagtgagtgaaagagtacATGAGCAAGTAAacaaaaagagatagagaataaaagagagtaagtgagtgagtgagtgagtcagaCATAGGGAAAGATAGGGAGtaaaagagtgtaaaagagtgagtgagtgagacatAGGGAAAGATAGGGAGtaaaagagtgtaaaagagtgagtgagagagtgagtgagacatAGGGAAAGATAGGGAGTaaaagagtgagtgaaagagtacATGAGCAAGTTAacaaaaagagatagagagtaaaagtgagtgagtgagtgagtgagtgagtgagtggaagaGAATAAATAAGAGTTAAGGAGAGAGTTATGGTGTGTAAAACTAAGTGTGTGAAAGTACGCAAGTGAAATAAAAAGAGTTAGAACTACAATATAGTGGGTGAAAGAGCAGCAAATTATTGAAATATGAAAGAGTGTAGAGGagtaagtgagaaagtgagtAAGTACAAAATGAAAGAGTAAGAAACTAAGTAAAAGGGAGTGAGTATAAAAGAGTGGTGGTAAAAGAGAGTGAACAAagggacaaaaaataaaagagttaAAGAAAGAATGAGTGACTGAAAAAGTTTGAAAATGTCATAGTTAACAATTGGCACCTCTTGAAGAACCCATACGCACATcaaatctaaaatgttttacatcaaATTTAATCTAAAGGTGACATATCACACCTATTTTCCATTAGCTACATTTTTCTTAGGATCTTATGGCATTTTACCAGTGGCATCTTATGGCATTTTAATACTTTCACAAAGACAGTGGGTGATGGTACCCAGATAGAGGGGTGGTCCATTTCTAATGAGACTTTGAAatgattattaaattaaataaactgttcTTTTATTGGAAGCCATCAAAAAGACAGCCTTATAATAA

Function

NR:

description
PREDICTED: placenta-specific gene 8 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250166.3 True 2154 mRNA 0.38 4 39126899 39137179

Neighbor

gene id symbol gene type direction distance location
LOC103036765 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 coding downstream 22046 39101117 ~ 39104853 (-)
LOC103037604 NA coding downstream 26124 39091555 ~ 39100775 (-)
LOC103037073 NA coding downstream 41721 39082567 ~ 39085178 (-)
LOC103037934 LOC108434867,LOC108267153,LOC107572570,LOC107753961,LOC107659726,LOC105903083,LOC107667731 coding downstream 57348 39065680 ~ 39069551 (-)
LOC103040853 LOC108434861 coding downstream 120670 39000095 ~ 39006229 (-)
LOC103035548 cldn7a,LOC103035548,LOC108434869,LOC107667734,LOC107753993,LOC108268068,LOC107572167 coding upstream 16058 39153237 ~ 39161707 (-)
LOC103034907 chrnb1l,LOC108434832,LOC108268067,LOC107753962 coding upstream 19970 39157149 ~ 39195199 (-)
chrnb1 chrnb1,LOC108267171,LOC107659727,LOC107664276,LOC103358387 coding upstream 61683 39198862 ~ 39244281 (-)
LOC103028039 tmem102,LOC108434872,LOC108267795,LOC107750772,LOC107659729,LOC107564774,LOC107560290 coding upstream 330184 39467363 ~ 39484662 (-)
pop7 pop7,LOC107750778,LOC107753970,LOC107595279,LOC107560286 coding upstream 708711 39845890 ~ 39848520 (-)
G147649 NA non-coding downstream 24685 39078300 ~ 39102214 (-)
G147637 NA non-coding downstream 101182 39023013 ~ 39025717 (-)
G147629 NA non-coding downstream 200100 38926385 ~ 38926799 (-)
LOC111194220 NA non-coding downstream 375542 38747818 ~ 38751357 (-)
G147514 NA non-coding downstream 445221 38639308 ~ 38681678 (-)
G147643 NA non-coding upstream 1842 39139021 ~ 39141977 (-)
G147645 NA non-coding upstream 11913 39149092 ~ 39151181 (-)
G147691 NA non-coding upstream 122718 39259897 ~ 39260652 (-)
G147693 NA non-coding upstream 125646 39262825 ~ 39265172 (-)
G147698 NA non-coding upstream 185412 39322591 ~ 39323343 (-)
LOC103036465 NA other downstream 3084 39117267 ~ 39123815 (-)
LOC103036951 ponzr4,LOC108434830,LOC107659705,LOC107750795,LOC107667736,LOC107753979 other downstream 13283 39111148 ~ 39113616 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other downstream 21985 39100098 ~ 39104914 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other downstream 65840 39041593 ~ 39061059 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other downstream 109267 39014002 ~ 39017632 (-)
fgf11 fgf11,fgf11a,LOC107664286,LOC107753963,LOC107750771,LOC107659728 other upstream 128170 39265349 ~ 39398012 (-)
tmem256 tmem256,LOC107564775,LOC107659713,LOC107560291 other upstream 353382 39490561 ~ 39498234 (-)
ufsp1 NA other upstream 678728 39815907 ~ 39817763 (-)
G147828 NA other upstream 683572 39820751 ~ 39821575 (-)

Expression


Co-expression Network