LOC103045353 (rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007)


Basic Information

Item Value
gene id LOC103045353
gene name rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38015582 ~ 38027404 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250197.3
GGGATGAGTCAGGCTGTGGGATGTTGCTGCCATTTCATCAGCACAATTCCCAAACAATCCGTGCAGCTCGTGAGCGCTGATCACCAGGCGTTGTCTGAGTGTGTGAACTGATGAGAAGTGTGGTGGGAGTCTCTGAGGGAACAGCAGGGGGTCGCAGAGACACGCtgcctgagctgctgctgctgctgctgtttactgagggttggtggtgctggtggtgctgATGGTGATGGTTGTGCTGTAAATAGGAAGCGGAGTGGGCAGGCTGGAGCAGGTGTGTGTCTGGCCGCGGGTTTCCTGTAAAGTCCTCCTCCCTTTAGGAGCATGGAGTCCTGTTTCTGCATCTGCTGAGACCTGAGCAGCCCAGCATCACACAAGCCGCACAGCTATGGAGGCGATATGGCTTTACCAGTTTCGTCTGATTGTAATCGGAGACTCCACTGTTGGTAAATCGTGTTTGATCAGGCGCTTTACTGAGGGACGATTTGCCCAGGTCTCAGACCCCACAGTTGGTGTGGACTTCTTCTCTCGCCTGGTCGAGATCGAGCCAGGAAAACGCATCAAACTCCAGATTTGGGACACTGCGGGTCAGGAGCGCTTCAGGTCCATCACGAGAGCGTACTACCGCAACTCCGTGGGTGGCCTTCTGCTCTTCGACATCACAAACCGCCGCTCTTTCCAGAACGTGCACGAGTGGCTGGAGGAGGCGCGCAGTCATGTGCAGCCGCACAGCATCGTCTTCCTCCTGGTGGGCCACAAGTGTGACCTGGAGGCGCAGAGGCAGGTGACGAGACAGGAGGCGGAGAAGCTGGCGGCGGCGTATGGCATGCGCTACGTGGAGACTTCGGCACGGGATGCCATCAACGTGGAGAGGGCCTTCACGGAGCTGACGCGGGATATCTTTGAGCTGGTGAAGCACGGCGAGATCACCATCCAGGAGGACTGGGAGGGGGTCAGGAGCGGATTTGTGCCCAATGTGGTTCACTCGTCTGAGGAGGTGACCAAGAGCGAGCGCCGGTGCTTCTGCTGATCCATCTAAAAAAACGCTCTCATGAACCTGAACCTGAGGTCTTCAGGATCGTTACAATCACAGGGCACTCTGTAGCCCCTCAGATATGACATAGCCCCTTTGCCTGCCTGCTGAATGCTTCCTAAACCTGCCCAGCCCTTCTGGTCCTCCACTGTTCCACAGAGTTACTGCCcattaaaaactgaattaaaggAAAACGGCCACAGCACACTGACCCAACAACCATCGACTTTCTAATGCTGATAAACCTGATAAACCAAATTTGAACCCATATGaattttgtatgtgtgtgcgtgtatgtagaacagtgtaattAAGCAGGGAGAACAATCAAGGATGATGTGAATGAAGGTGAGCGTTCCTGAACTGAGTGAATAGGCTGAATGTATGTTCTGCAACAGTGTGCATGAgaaagaacattctagaacagtgtgaatgacaAGGGAGTGAGTATCTACAACAGGGTTGACTggaaagaacattttaaacagtgtaaatgaaGGTGAATCTTCTAGAACATCGTCTAGATTGAGAATATTCTCAAGCAATGTGTGAATGAGAAACATCCTTAAACAGCATTAAAGGTAGAAAACATTCTAGAGCATTCTGAAGCtatttaaacaaatcagaacatTCTAAAATAACATGGATAATGGgtaatattctaaaataatgttaattaaaaacattcttAAACAGTCCAAAAGGCAAAGAAAGGTCTAGAACTGTGGGAAAATTTGTTTATATGTGGAGTGTTTATCTAAAAGCAATGTGAATGAGGGAGATAACATCCtgataacattttaaaacagtgtgaacACATGGGCTGTTCTAGCAAAGTGTAAATTGGGAGAATGTTTTAGAAATGTGTAAGAGAAGGAATACATACTCCAACTGAATGAATGGATTCTAGAGCCATGCCAATGATTAGGGGTTTCTAGTACAGTAAATGCAGAGAGAAAATGTTGTAGATGGATGAAAGGGAACACATTCTAATCAAAGTTCAAAATTAAGGAGAATATGGTTAAACTGTGTAAACAGGGCAGGATATGTTAGAacagagtgaatgagtgaacaTCAGTGTGAACAGAGAGGTGGTCTAGAATAGTGCAGATAGAGGGGAAGTAGTACACTGTGATCTGTGGGATGGAATAGAACAATGTTCTAGAATACTGTGAATAAGACAGTAGACTAGTCTTTTATAATTAGAATGAGGTGAATGTTCCAGAACAGTGTGAACAAAGAGGTGCTCTAGCGTAGTTAAAATAAAGGAGGATATCGCTATGCTGTGTATATGGACTAGAATGTTATGAAATAGGTGGGATGAGGTGGTACAATATTCTAGAGTGAAATGAAGTGGTAGAATGTTCTGGAGCTGTTTGAATTAGGTAAATGTTCTacaacagtgtgaacaggaagGCGGTCTAGAATAGAGTGCACGAGGGAGAACCGTGTAACTGTAAAAGTGGTGTAATGTTCTAGAATTCTGGGAAttagacagaattttgtttGAATAGTGTAAATGAGGTGGATGTTCTAGAATAATGT

Function

symbol description
rab39bb Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within Rab protein signal transduction and autophagy. Predicted to be located in plasma membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in Waisman syndrome and non-syndromic X-linked intellectual disability 72. Orthologous to human RAB39B (RAB39B, member RAS oncogene family).
rab39b Enables myosin V binding activity. Involved in regulation of autophagy. Located in Golgi apparatus; neuron projection; and vesicle. Implicated in Waisman syndrome and non-syndromic X-linked intellectual disability 72.

NR:

description
ras-related protein Rab-39B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07925 RAB39B; Ras-related protein Rab-39B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250197.3 True 2578 mRNA 0.46 3 38015582 38027404

Neighbor

gene id symbol gene type direction distance location
syt4 syt4,LOC107562593,LOC107691948,LOC107742284 coding downstream 19100 37987447 ~ 37996482 (-)
LOC103046269 NA coding downstream 46504 37944839 ~ 37969078 (-)
LOC103047381 NA coding downstream 116681 37887683 ~ 37898901 (-)
LOC107197638 NA coding downstream 181577 37829318 ~ 37834005 (-)
LOC111194218 NA coding downstream 190932 37823208 ~ 37824650 (-)
LOC103028971 si:dkey-172j4.3,LOC108434852,LOC108267497 coding upstream 126418 38153822 ~ 38296144 (-)
LOC103028652 zgc:109889,LOC108434857,LOC107742291,LOC107691956,LOC107562726 coding upstream 325334 38352738 ~ 38403259 (-)
LOC103044140 LOC108434824,LOC108267122,LOC107691957 coding upstream 381440 38408844 ~ 38609892 (-)
LOC103043213 LOC108410408,LOC108267136 coding upstream 801273 38828677 ~ 38845998 (-)
LOC103041964 clcn5,LOC108434858,LOC108267828,LOC106563682,LOC108279192 coding upstream 900122 38927526 ~ 38961503 (-)
G147386 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288 non-coding downstream 6559 38003479 ~ 38009023 (-)
G147359 NA non-coding downstream 203237 37811598 ~ 37812345 (-)
G147311 NA non-coding downstream 407697 37596154 ~ 37607885 (-)
G147320 NA non-coding downstream 412660 37584618 ~ 37602922 (-)
G147321 NA non-coding downstream 414185 37584263 ~ 37601397 (-)
G147397 NA non-coding upstream 14048 38041452 ~ 38041671 (-)
G147407 NA non-coding upstream 66108 38093512 ~ 38122985 (-)
G147405 NA non-coding upstream 98250 38125654 ~ 38213359 (-)
G147427 NA non-coding upstream 200107 38227511 ~ 38227978 (-)
G147478 NA non-coding upstream 368751 38396155 ~ 38396864 (-)
LOC103047699 NA other downstream 104709 37904892 ~ 37910873 (-)
LOC111194363 LOC108267931 other downstream 157011 37840882 ~ 37858571 (-)
mrpl52 mrpl52 other downstream 288773 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 501130 37508661 ~ 37514452 (-)
G147092 NA other downstream 623847 37352078 ~ 37391735 (-)
LOC103040134 NA other upstream 979582 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 986598 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 1002594 39029998 ~ 39250697 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other upstream 1014189 39041593 ~ 39061059 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other upstream 1072694 39100098 ~ 39104914 (-)

Expression


Co-expression Network