syt4 (syt4,LOC107562593,LOC107691948,LOC107742284)


Basic Information

Item Value
gene id syt4
gene name syt4,LOC107562593,LOC107691948,LOC107742284
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37987447 ~ 37996482 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250199.3
TTTCTCGGTCATATAGCGgagagagagcagcagcagcagcacagggcGGTGCTGATCCACCAGTaaggaggaggaagaacagGAGGAAcagcaggaggaagagcagCGCGGTCCAGCTGTTCCCTGAAAAACAAACGAGCACGCGCGCGTAAATTTTTAATCCGGTACACGCGgcgttcacacacacacgtcgCTCCGAGTCTCGAGCCTCCGGAGGAGAGAAGTGCGCAGATCAGCGGGAGCATCGTTTCAGCACCGCGGACAGCGATGGCTCCAGTGGCCTCTGAGCACGCGCAATTCGCGGAGGTCCCAGTGAGTGTGGCTGTGGTCAGTGTCTTTGGCCTGGTCTTCAGCGTCTCCGCCTTTGCATGGATTTGCTGTCAACGCAAGACCAACAAGAGCAGCACCAAAACCCCACCGTACAAGTTCGTCCACATGCTGAAGGGGGTGGACATCTACCCCGAGAGCTTAAGCGGTAAGAAAAAGTTTGCCGGAGAGAAGACTCCTGACCCCACCCAGGGAAAAAACAGCCCCAGTCCTACCGGTGGACGTCCTGCACTCCACCTGGACCTGGAGAAGCGAGACCTCAATGGAAACTTCACATTCAAGCCTCCAGCGGCACTCCATCCCAAAGTGCGCAGCTCTCCAGACCTGGACATCCCATCCCCACACCCAGGGTTTGGTCAGGGGGGCAATCAGGAAGCCACCACCCCAGAAAGCAACCTGTCCAGCCAGACACCTACTCCTGCCCTGGACAAGCCCCAAGACAAGGAAGCTGGCCTGGGCACCCTGTTCTTCTCTCTTGAGTACAACTTCGAGAAGAAGGCCTTCATGGTGCACATCAAGGAGGCGCACGGCCTCTCCCCCACAGACGAGCAGTCCTTGACCTCTGACCCTTACATCAAGCTGACCCTGCTCCCTGAGAAGAAGCACAAGGTGAAGACTAGGGTTCTGAGGAAGACTCTGGACCCGGCCTTCGACGAGACCTTCAGCTTCTACGGGATCCCGTACGCTCGAGTGTCCCAGCTGGCTTTGCACTTCATGGTGCTGAGCTTTGACCGGTTCTCCCGCGACGAGGTCATCGGTGAAACACTCGTACCATTGGCTGACGTGGACCTCTCTGAGGGGCGGGTCCTCATGAGCCGTGACATCATCAAGAAGAATGTTAGGAGGACTACAGGGCGGggagagctgctgctgtctctGTGTTATCAGTCAACCACCAGCACCCTGACCGTGGTGGTCCTGAAGGCTCGCCATCTCCCCAAGACTGACCCCAACGGACCATCCGaccCATATGTGAAGGTGAACTTGTATCAGGGGAAGAAGCGCGTGTGCAAGAAGAAGACCCATGTGAAGAAGTGTGCACCGAACCCTGTCTTCAACGAGCTCTTTGTCTTTGATGTTCCCTCTGAGGAGGGTCTGCGGGACACCAgcgtggagctgctgctgctggactcGGACCGGACGGCGAGGACACCGCTCATTGGGCGCCTTCTGCTCGGCACCTCCTCCCCAGGAACTCCCGGAGAACACTGGCGTGAGATCTGCGACCACCCACGGAGGCAAATCGCCAAGTGGCACGCACTCTCCGAAGACTAGCTGAGTATGAGTGGGTTGCCATTGCAAAAATACCCAGGAACTGTCAAAATATGTGGGAATGGGAGTGGGCGGGAGTTAGGTCGAACTTTTACAGTGCATTTGGAAAGTCCTCGAAAATTAACTTGGCAATTGTGGAGTTCACAACAAGATCGATGCATTCAAACATCCGACAAAGTCATAAAAACAAGTGGTACACTCAGGTGAGCTCCATATTTCCTGAGTTTACAGGTGCGTTCAGATGGTCCTAGTCAAGTTGGGAAAGTTGGAAAATCATAACCACATTCTAACTACTAGTTGTTTGCATTAAAGTGctctttgtcctgtttttctaCTTTGACGTCTACTTTATTAGTTTCTGGGGAAACTTATGAACATGTGTCACTAAATGTATTGTAGCTACTAGTTGCAAATGAGATTGACCAATCACGTCGCCTGATGCAAAAAGAACAATGGCAAAAAAAGGTCTACTACATTGTCGTGGTATCAAAAAGTGCAAGTCATAAAACTGTTCTGTCATCATACTAGTGTTACAATTAGTAGCTATTTTGAGTAGACATCGCTAACTTGTAAATTTGTAAGATCGCTATGTATTTCGCCTGGATAATACGTGGTAATACGTACTCATAACTCATAATCTCAAGGTTAGGATACCACTTGCATTTATGACTTGGTTGGCCCGTTCATTTGCATATTGCGAAGAGTTTATGAGGACCATCTGAACGCTCCAGAACATCAGTGATGTCACCTGTCAGTCAATTAGTTCAGGACGGGGATTTCTACAGAGGGGGGAGCGCCGGCTTAACCCGGCCAACCAATGATTCCAAAGACAGTCTGTGGACACCCCATAACGCTTCTCGTCATATTTCATACAGTTGATCTGATTGGTCATCACCTTGTGCAGTGCCGAATGTCATAAATGTCTCTTTTGCTGTTCGCTCTACTTAGTATCAATATTACTCAGATAAAAATGGTGGaaaagaaaacaggaaacagtTACTATgatgctgtaaatataaaaacatggataatgattttattttttaaagaagctatctgttattttattaaattgtctgtttttttctttcctttttgtacttaatttgttgatttttggttgttcttttttgcctttttattttttctacgtTGAAGTGGTTCATATGTCATATTTCAGCCATGTGCAAGCAGCCTAAATtaggcaaaacaaaacaaacaaaaaaaaaaacccagactgATGTTTATGAACAAAGGACTGCATGATCTGACCTGAACTGAACTGGATGTATGGGAAGCGTCTGTTTATGTGtgagtgtctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcagttctaactggagagagatagagtttACCTCTTCATTGTGAGCACAATGGCAGAATGTAATGTTCATGtatcttaatataaaacatcaagttgaaaaagaaaaa

Function

symbol description
syt4 Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to act upstream of or within exocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; exocytic vesicle; and synapse. Is expressed in nervous system and neural tube. Orthologous to human SYT4 (synaptotagmin 4).

NR:

description
synaptotagmin-4-like isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19904 SYT4; synaptotagmin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250199.3 True 3069 mRNA 0.48 4 37987447 37996482

Neighbor

gene id symbol gene type direction distance location
LOC103046269 NA coding downstream 18369 37944839 ~ 37969078 (-)
LOC103047381 NA coding downstream 88546 37887683 ~ 37898901 (-)
LOC107197638 NA coding downstream 153442 37829318 ~ 37834005 (-)
LOC111194218 NA coding downstream 162797 37823208 ~ 37824650 (-)
LOC103022155 LOC103022155 coding downstream 165514 37816286 ~ 37821933 (-)
LOC103045353 rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007 coding upstream 19100 38015582 ~ 38027404 (-)
LOC103028971 si:dkey-172j4.3,LOC108434852,LOC108267497 coding upstream 157340 38153822 ~ 38296144 (-)
LOC103028652 zgc:109889,LOC108434857,LOC107742291,LOC107691956,LOC107562726 coding upstream 356256 38352738 ~ 38403259 (-)
LOC103044140 LOC108434824,LOC108267122,LOC107691957 coding upstream 412362 38408844 ~ 38609892 (-)
LOC103043213 LOC108410408,LOC108267136 coding upstream 832195 38828677 ~ 38845998 (-)
G147359 NA non-coding downstream 175102 37811598 ~ 37812345 (-)
G147311 NA non-coding downstream 379562 37596154 ~ 37607885 (-)
G147320 NA non-coding downstream 384525 37584618 ~ 37602922 (-)
G147321 NA non-coding downstream 386050 37584263 ~ 37601397 (-)
G147314 NA non-coding downstream 422245 37562807 ~ 37565202 (-)
G147386 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288 non-coding upstream 6997 38003479 ~ 38009023 (-)
G147390 NA non-coding upstream 25573 38022055 ~ 38022505 (-)
G147397 NA non-coding upstream 44970 38041452 ~ 38041671 (-)
G147407 NA non-coding upstream 97030 38093512 ~ 38122985 (-)
G147405 NA non-coding upstream 129172 38125654 ~ 38213359 (-)
LOC103047699 NA other downstream 76574 37904892 ~ 37910873 (-)
LOC111194363 LOC108267931 other downstream 128876 37840882 ~ 37858571 (-)
mrpl52 mrpl52 other downstream 260638 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 472995 37508661 ~ 37514452 (-)
G147092 NA other downstream 595712 37352078 ~ 37391735 (-)
LOC103040134 NA other upstream 1010504 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 1017520 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 1033516 39029998 ~ 39250697 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other upstream 1045111 39041593 ~ 39061059 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other upstream 1103616 39100098 ~ 39104914 (-)

Expression


Co-expression Network