LOC103046269


Basic Information

Item Value
gene id LOC103046269
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37944839 ~ 37969078 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250200.3
ACaagtgaaaaaaagagagacagagagagcgatagagacatagagagacagagagaaagtgtcAGACTCAGCTTGACGTGTGCAGCAGGTCACTGTTTGGAATGAGTCCTGCTGAAAAGTCGCCTCAGGGGCCGGCGGGCCTGAAGCAGCAGCTGCTCCAAAAACTGCTCTACTGCACTGGAGACATGCAGCACTTACACACTTACCTACAGGaccAGGCGTTCTCTGTGCAGCTGCTGGAGTGGAGTCTGCGGGGTGTGTCAGGAGTGATTATGGTGGATAACCCTGTGAGTGGAGCTCTGATTCTGACTGCTCTGACTCTGTCCAGCCGCTGGCAGGCTTTACTGGGCAGCGCTGGTCTTCTCACCTCCACAATCACAGCCATCATCATCGGCCACGAGCGagcagaagtGTCCAGGGGGCAGTTTGGTTATAATGGGATGCTGGTGGCGTTGCTGATTGGTGCGTCCAGCTCTGCAGGAGACTGGTACTGGTGGCTCCTGCTACCTGCATGCCTTGGTGGAGCAACAACtgtgtttgtgtccaGTGGTCTAGCCCCTGTGTTGGGCAGGTGGGATCTCCCCGTGAGTGTGTTTCCCTTCAACACTATACTGCTGCTGTACCTGGCCTGCATTGGCACTCACAACCCTTACTACCCTGTACTGCCCCTGGGGGTACCACTGAGCACCAACAACACAGAGCTCAACATGCCACAGCTCCTGAAGGGGGTGGTGTTGGGAGTGGGGCAGATTTATGCCTGTGATGCTTTGGGCCCCACCTTGCTCATCCTCTTTGCTGTGCTGATTTTCTCTCCCATCATGGCTGTTCACGCTCTGCTGGGCTCCGGCATTGGCACACTGGCAGGTCTTTCTGTCGCAGTCCGACATGATGCACTGTATTCAGGACTGTCGAGTTTTAATGGAGCTCTGGGCTGTATGGCTGTAGGAGGACTAATGTTCACTTTAAACTGGAAAACTCATGTGTTCTCTATTGTTTGTGcTTTTCTCTCTTCATATGCAGACATAGCCTTCAGCAATGTGCTGGCAACTGTTTGTCTCCCTGCCAGCAGCTGGGCAGCCACACTGACCGTCACTCTGATGCTGCTGGTGAGCGGACCTGCCCTTTCTTCATATCGAGTCCCAACTGGACGAAACCCGCCTGATCACTACCTGCACACTCCTAACCAATGTACTGAGGACAACACAGACAGCAGCCCTGTATGActgacacagacacaaacacacttaaaattatgCTCGTG
>XM_022678519.1
GGCCTGAAGCAGCAGCTGCTCCAAAAACTGCTCTACTGCACTGGAGACATGCAGCACTTACACACTTACCTACAGGGCGTTCTCTGTGCAGCTGCTGGAGTGGAGTCTGCGGGGTGTGTCAGGAGTGATTATGGTGGATAACCCTGTGAGTGGAGCTCTGATTCTGACTGCTCTGACTCTGTCCAGCCGCTGGCAGGCTTTACTGGGCAGCGCTGGTCTTCTCACCTCCACAATCACAGCCATCATCATCGGCCACGAGCGagcagaagtGTCCAGGGGGCAGTTTGGTTATAATGGGATGCTGGTGGCGTTGCTGATTGGTGCGTCCAGCTCTGCAGGAGACTGGTACTGGTGGCTCCTGCTACCTGCATGCCTTGGTGGAGCAACAACtgtgtttgtgtccaGTGGTCTAGCCCCTGTGTTGGGCAGGTGGGATCTCCCCGTGAGTGTGTTTCCCTTCAACACTATACTGCTGCTGTACCTGGCCTGCATTGGCACTCACAACCCTTACTACCCTGTACTGCCCCTGGGGGTACCACTGAGCACCAACAACACAGAGCTCAACATGCCACAGCTCCTGAAGGGGGTGGTGTTGGGAGTGGGGCAGATTTATGCCTGTGATGCTTTGGGCCCCACCTTGCTCATCCTCTTTGCTGTGCTGATTTTCTCTCCCATCATGGCTGTTCACGCTCTGCTGGGCTCCGGCATTGGCACACTGGCAGGTCTTTCTGTCGCAGTCCGACATGATGCACTGTATTCAGGACTGTCGAGTTTTAATGGAGCTCTGGGCTGTATGGCTGTAGGAGGACTAATGTTCACTTTAAACTGGAAAACTCATGTGTTCTCTATTGTTTGTGcTTTTCTCTCTTCATATGCAGACATAGCCTTCAGCAATGTGCTGGCAACTGTTTGTCTCCCTGCCAGCAGCTGGGCAGCCACACTGACCGTCACTCTGATGCTGCTGGTGAGCGGACCTGCCCTTTCTTCATATCGAGTCCCAACTGGACGAAACCCGCCTGATCACTACCTGCACACTCCTAACCAATGTACTGAGGACAACACAGACAGCAGCCCTGTATGActgacacagacacaaacacacttaaaattatgCTCGTG

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250200.3 True 1261 mRNA 0.53 8 37944839 37969078
XM_022678519.1 False 1119 mRNA 0.54 8 37944839 37968941

Neighbor

gene id symbol gene type direction distance location
LOC103047381 NA coding downstream 45938 37887683 ~ 37898901 (-)
LOC107197638 NA coding downstream 110834 37829318 ~ 37834005 (-)
LOC111194218 NA coding downstream 120189 37823208 ~ 37824650 (-)
LOC103022155 LOC103022155 coding downstream 122906 37816286 ~ 37821933 (-)
LOC103022872 NA coding downstream 136544 37800904 ~ 37808295 (-)
syt4 syt4,LOC107562593,LOC107691948,LOC107742284 coding upstream 18369 37987447 ~ 37996482 (-)
LOC103045353 rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007 coding upstream 46504 38015582 ~ 38027404 (-)
LOC103028971 si:dkey-172j4.3,LOC108434852,LOC108267497 coding upstream 184744 38153822 ~ 38296144 (-)
LOC103028652 zgc:109889,LOC108434857,LOC107742291,LOC107691956,LOC107562726 coding upstream 383660 38352738 ~ 38403259 (-)
LOC103044140 LOC108434824,LOC108267122,LOC107691957 coding upstream 439766 38408844 ~ 38609892 (-)
G147359 NA non-coding downstream 132494 37811598 ~ 37812345 (-)
G147311 NA non-coding downstream 336954 37596154 ~ 37607885 (-)
G147320 NA non-coding downstream 341917 37584618 ~ 37602922 (-)
G147321 NA non-coding downstream 343442 37584263 ~ 37601397 (-)
G147314 NA non-coding downstream 379637 37562807 ~ 37565202 (-)
G147386 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288 non-coding upstream 34401 38003479 ~ 38009023 (-)
G147390 NA non-coding upstream 52977 38022055 ~ 38022505 (-)
G147397 NA non-coding upstream 72374 38041452 ~ 38041671 (-)
G147407 NA non-coding upstream 124434 38093512 ~ 38122985 (-)
G147405 NA non-coding upstream 156576 38125654 ~ 38213359 (-)
LOC103047699 NA other downstream 33966 37904892 ~ 37910873 (-)
LOC111194363 LOC108267931 other downstream 86268 37840882 ~ 37858571 (-)
mrpl52 mrpl52 other downstream 218030 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 430387 37508661 ~ 37514452 (-)
G147092 NA other downstream 553104 37352078 ~ 37391735 (-)
LOC103040134 NA other upstream 1037908 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 1044924 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 1060920 39029998 ~ 39250697 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other upstream 1072515 39041593 ~ 39061059 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other upstream 1131020 39100098 ~ 39104914 (-)

Expression


Co-expression Network