LOC103022872


Basic Information

Item Value
gene id LOC103022872
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37800904 ~ 37808295 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250212.3
AAGATTTGGCGCGGGGCGGACACATGAATCTTTGTTGGGTGAATctgaattataattttaaagctTGACTCGCGGTTCTTACAGCTGGAATTCCggtgtttattaaatatatatcgaGTCTTTATAATCACCGCCTGCAACCAACTGTTTAAAGCCGCTGTCAGCGCTTCTATTTGTGTTTTAGCTTCTTTATCAAGCgcattaatgtgatttatataGATTAAGTTACTTCAGCTGATCTCACCCCAAACCGAGATAATATAGTTACTCTTCACACTGACAGTACATACAGTTACAGGATTAATAATGAGGGGTTCAGGAAAAGCTGAGAATAATGACGAGTCTTTACCCATCGCATCCCTTCGTCTTTTGGCTCCACCGATGAGACTGGTCTCGGCTGCAGTGTGGAAGGTGATGCAGCAGCGTGATGTGATGCAGTATGGAAAGCTGGAGGAGTTTGTGACCTCTGTCTCGGAGTCTGTACCTGGACTGCTGAGTTACAGACATCAGGCTAAGCTCACTGTGGGTCTTCGGGCACAGTTCATCCTGCAGCAACTCAGAGTGTCTTCGTCTCCCGACCCTGACCTTATTGTCCCTCATCTGGAGAGACTGCGGGCTCCTCCCATATCCAAAGGCAAAAGGAAGATTCAGAAAGTTGAACTAGCTGTGAAGAATTTCCACACCCTTGTGCATACATTGCTCAAGAACCCAGAAAGGAGGAAACAATTCttccagGAGGAGTTTGACTCTCAGTATGGGCCACAGTATGATCTTGCTGTAGAAAAGTTGCTGTGGGAATTCCTGACCAGACTGGACCAGCTGCTTCCAGTCCCAGATCTTGCTCAGACTGTGTCATGGCTTAGTTCTGCACCAGCTGTGCTGGAGGAATGTGCACGCTCTGCATCTCAGCCACAGCTTCTCAGCACTCTGCTCCAGCACGAGAAATGTCTGGGACACCTGGACTCGGCAGCGTCTTTTCCTTCTTCCGTTGGCGAATCTATCCTatcctctctttccctccctccctctggCAGAGTACGGGACACCAACCAATCAGGATCTACCTCTACCCCCAGCGCTGTCCTGAGTCCTGCTCTATCTGCAGAGCGCTCTGGTGGTAGAAAAACTAGGAGTACATCATCACAAATTGCACCAGTGATCGGGACCATATCCAGTAAAGACCTTCCTCAGAGCACTTCAGCCAATCAGGATGAATCGCCTGCTTTGGAAATGGACACAGAAGATATTTTCACAGGGGTGAATTCAAGCTTGTGtcagaagagcaagagtttgcAAGAGGACGTTTCTGAAGAGGAACACTGTGTTGGGAATATGTTTATTTCTGTAGTCAGCCAGTCTTCAAGCACTCCAGAGGAAGACTATGATGAAGATGACATGCGACCAGTGAGGAGAAGCTCTAGGAGCAGGAGGATTAGTGAAACAGGGAAACGAGAGACGAGGAAGAGCTCAAGAGTGCTGGAGCAGAACAGGAAGAGCAACGAAGAGGGgcttaaaaactccagcaagaATTCCCCTAGAACTGTCCCGGACTCAAAGTCCCAAAAAGACAAACCTGTCTCTGCtgtcctctcctcctctatgAAGCGTCATCTAACAGTCAACATCCCAAAACTGGACATCAGCAAAATCACACAACCTGTGCTGCTCAACACATCGGCCAATCATGATCAGACTCCACCATCTCCATGCCGGTCCTCCCCAGAGCGAGCGTGTAGAGTGAGAAACAGTGACTCTGTGAACCGGAAGAGGAAACTCAGCTGCATGTCGACCCCTGAAAAGAACCTGACCACTGCAGTTAATACACAAATATGTGCCGGCTCACCCTGCATACCCAACATCATGACCGGATGGCCAGATAGTCCAGGTCGGGCCTCTCCTGTTATTGACTCCACTGATGATATTATAGTTGACTCAGAGGATGAAGCCACTGAGAAAGTGAAAGGCAGGCTCTTCACATCTCGCTACTCCAAAACCAAGAACAACACGTATGTTCCCACTCTGCATGAGTTCTGGACTCCTGCTTTCTTTCGGCGTGACCTCGTGTCTCCAGGAAACGGCTGCAGATGACTTTCACTCAGTTGTTGCCTTTGGATTTGAAGTTATAAACCGGTGTGCTGCTGATTGTGCAGCCTGTTTTCACTTTTACATTTTGGTGAGTGGTAACTGTGTAGCGCTTATTCAcctaaacatgtaaaaaaatatatatatatatatatatatatatatattttaaaagtagttaaataaagtagttaaatgTAGTTATGTCAGTATATGTGTTACAATTGCATTTAGAGTATAAGGTGCTATTTTTGTTATGCTATGCTATAATGTGTTTTGCACATGCTCTTAATACAGCTCATTTAtgtttcatttatatatttgtaactTATTTTAGTAAAGCTATTATGCCAGACACTACCTATTAcgttaaattgttttaattaaaatgcctaaaattatgcagtaaaatcACAAAAGCATggcactttttattttgcaccgtctaactagaaaaagacagaaacacagaactCTGAATCCATTAACAGTAGAAGTATTTTctttagataaataaaacataaagccagagagcagtgagtagtgttttctacaccttcaaaagcctattggaaactggagaaaactggtacaggaagttGTTTGGCTGGCCCACATGACAAAGCTATTGGATTTAATCTCAGTTTTAGCAATGAAAATAAGTATTAGAAGTCTGAgaggtgaagtgcagtaataaagatGTGTGgttgtggcacagtggataccACCACTACCTGCAAgtgagactggggttcaattcctggtctggttGACTAgtagactcctaacactacactgacccacctctgtaatagaagtcactttggataagtgtcagctaaatgcctAAAATGTAAAGTCATTGCTAACAATATAATAGCATACCCATAgagcactgctactggactgtcagagtgttctaaaacttttgctcagtagtgtatatataaaaaaacaagcaaatgatGTAAagatttattatacatttattttcatgtcATTGTATTAAAATCAAATATGGC

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250212.3 True 3104 mRNA 0.43 10 37800904 37808295

Neighbor

gene id symbol gene type direction distance location
LOC103023489 LOC103023489 coding downstream 5627 37789105 ~ 37795277 (-)
LOC103023814 LOC108440030 coding downstream 13084 37770817 ~ 37787820 (-)
LOC103024124 acin1,LOC108440069,LOC108267949 coding downstream 33944 37742557 ~ 37766960 (-)
lrp10 lrp10 coding downstream 115182 37674854 ~ 37685722 (-)
LOC111194362 NA coding downstream 128874 37661676 ~ 37672030 (-)
LOC103022155 LOC103022155 coding upstream 7991 37816286 ~ 37821933 (-)
LOC111194218 NA coding upstream 14913 37823208 ~ 37824650 (-)
LOC107197638 NA coding upstream 21023 37829318 ~ 37834005 (-)
LOC103047381 NA coding upstream 79388 37887683 ~ 37898901 (-)
LOC103046269 NA coding upstream 136544 37944839 ~ 37969078 (-)
G147311 NA non-coding downstream 193019 37596154 ~ 37607885 (-)
G147320 NA non-coding downstream 197982 37584618 ~ 37602922 (-)
G147321 NA non-coding downstream 199507 37584263 ~ 37601397 (-)
G147312 NA non-coding downstream 203913 37550249 ~ 37596991 (-)
G147359 NA non-coding upstream 3303 37811598 ~ 37812345 (-)
G147386 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288 non-coding upstream 195184 38003479 ~ 38009023 (-)
G147390 NA non-coding upstream 213760 38022055 ~ 38022505 (-)
G147397 NA non-coding upstream 233157 38041452 ~ 38041671 (-)
G147407 NA non-coding upstream 285217 38093512 ~ 38122985 (-)
mrpl52 mrpl52 other downstream 74095 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 286452 37508661 ~ 37514452 (-)
G147092 NA other downstream 409169 37352078 ~ 37391735 (-)
poln poln,haus3 other downstream 554879 37084996 ~ 37246025 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other downstream 1094623 36666199 ~ 36706281 (-)
LOC111194363 LOC108267931 other upstream 32587 37840882 ~ 37858571 (-)
LOC103047699 NA other upstream 96597 37904892 ~ 37910873 (-)
LOC103040134 NA other upstream 1198691 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 1205707 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 1221703 39029998 ~ 39250697 (-)

Expression


Co-expression Network