LOC103040438 (pcyt1a,LOC103040438,LOC108430756,LOC108267677,LOC107709348,LOC107671662,LOC107727528)


Basic Information

Item Value
gene id LOC103040438
gene name pcyt1a,LOC103040438,LOC108430756,LOC108267677,LOC107709348,LOC107671662,LOC107727528
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2395957 ~ 2405369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250619.3
ataaaaataagaataaaataagattttgaCGCAGGTCCGATCGATGAACTGGCAACCCCATAATCTCTAGCTGGCTGTCTACGACATTTGCGTACAGGGAGGCCGTGACACTGAGTGCAGTATGATCTCACGATTCATGTGAAAGTCTTAGTAACTCTGGACATATTTAAAGCAGAGCCTGGCTGTGGACTGCACAAGATAAGGGCAGGAGCTCACGATCATATTGATCGTCAGGAATGGAGGCCCACGCTTCAGCTCGAGTCGTCTccaggaagaggaggagagagggatcTAACGGAGAGGCGGAGGAGGACGAGAGGCCGCTGAAGTTGAAACGCAGCACAGTGGGTTTGAAGGATCCTGCACCCTACGCTGATGAGCTCGACCCCATGGAGAACAAGCCATATAAACGAGTTAGCATGGAGGAGGCCAAGAGAGGAACACCACCTGAACGGCCAGTGAGGGTGTACGCTGACGGCATCTTCGACATGTTCCACTCAGGACACGCCCGCGCCCTCATGCAGGCTAAAGGCCTCttccccaacacacacctcaTTGTGGGCGTATGCAGTGACGAGCTCACACACAAGCTAAAAGGTTTTACGGTGATGAATGAGGACGAGCGCTATGATGCGGTTACACACTGCCGCTATGTGGACGAGGTGGTCCGCAATGCACCGTGGACCCTGACCCCAGAGTTCCTCACCAAACACCGAATTGACTTTGTAGCTCATGATGACATCCCGTATTCATCTGCCGGCAGCGATGATGTTTACAAGCATATCAAGGATGCAGGAATGTTTGCACCAACCCAGAGGACAGAAGGCATCTCCACCTCTGACATCATCACGCGCATCGTCCGGGACTATGATGTGTACGTGAGGAGAAACCTCCAGCGAGGATACACTGCCAAAGAGCTAAACGTCAGCTTCATCAACGAGAAGAAGTACCACCTGCAGGAGCGCGTGGATAAGGTGAAGCAGAAGGTGCGGGACGTGGAGGAGAAGAGTAAGGAGTTTGTGCAGAAAGTGGAGGAGAAGAGCATCGACCTCATCCAGAAGTGGGAGGAGAAATCCCGCGAGTTCATTGGAAACTTCCTGCAGATGTTCGGTCCAGAGGGGGCGCTGAAGCACATGCTGAAGGAGGGGAAGGGCCGCATGCTGCAGGCCATCAGTCCCCGCCAGAGTCCCTCCAGCAGCCCGACCCGCGAGCGCTCGCCCTCGCCCACCTTCCGCCTGCCCTTCTTCACCAAGACCTCACCACCCGGATCACCCTTCACCCTGCGGGGGCACGTCGGCGCCCAGACCATCAgcgaggatgatgatgatgatgatgacgatgatgagaTTTAAGCTGCTGGTGAAGAAGCTAAAACTGGAAAACCCGAAATGGACTCTGTTGAAGAAACTGGACtctggactgtgtgtgtgtacggttCTCTGCACTTTCCACGAGTGTGTTTTTTTCGGCGAGAGAAGCTCCCGTGTTCAGACTGTTGTAAAACACAGGTTAAATACTGCTCATATAGTTCAGTGCAGCGTGTACCGTACCACGTGCGTGATGGTGAAGAGGAGTGCCAGCGTTCAGGATTGTTTAGAGGTGTTTAGTCCTTGGGTAAAGGGCTGGGTTTAAGGAAGCGGTTCCCACTTTTATCACGATACACAGCTTTTATTcgtttttacttgttttaatgtggagaattcagttcagttcagttcacatttataatctttatctatttttgaAATATGACAGTATCACACAGAACAATTTTTATTCAACTTCTGTTAAAGTCTCTGCAGTGAGCCCTTCCTTTTAAATACTAATTATAATGAAAATAttaattctgaattatttataattaattatgtatCTTGAAGGTGGGTGGGgcctttaaaaactactttttgcTTTGTAATATTTGAGGTCAGACTGTTTGATACTGCTTTTTTCTCATAAATAAGCCAAAATAGCAAACATCACCTGCTAGGAAGTTGAATATTTAAGACATACTTAAGAGATGTAATTgcttataatattaattaatagaaaattattatcaatcaaaaaagtaaaatggcTAAAAGCACAGACTACATAAACCATAATGACAGATG
>XM_007250620.3
taaaaataagaataaaataagattttgaCGCAGGTCCGATCGATGAACTGGCAACCCCATAATCTCTAGCTGGCTGTCTACGACATTTGCGTACAGGGAGGCCGTGACACTGAGTGCAGTATGATCTCACGATTCATGTGAAAGTCTTAGTAACTCTGGACATATTTAAAGCAGAGCCTGGCTGTGGACTGCACAAGATAAGGGGAGCTCACGATCATATTGATCGTCAGGAATGGAGGCCCACGCTTCAGCTCGAGTCGTCTccaggaagaggaggagagagggatcTAACGGAGAGGCGGAGGAGGACGAGAGGCCGCTGAAGTTGAAACGCAGCACAGTGGGTTTGAAGGATCCTGCACCCTACGCTGATGAGCTCGACCCCATGGAGAACAAGCCATATAAACGAGTTAGCATGGAGGAGGCCAAGAGAGGAACACCACCTGAACGGCCAGTGAGGGTGTACGCTGACGGCATCTTCGACATGTTCCACTCAGGACACGCCCGCGCCCTCATGCAGGCTAAAGGCCTCttccccaacacacacctcaTTGTGGGCGTATGCAGTGACGAGCTCACACACAAGCTAAAAGGTTTTACGGTGATGAATGAGGACGAGCGCTATGATGCGGTTACACACTGCCGCTATGTGGACGAGGTGGTCCGCAATGCACCGTGGACCCTGACCCCAGAGTTCCTCACCAAACACCGAATTGACTTTGTAGCTCATGATGACATCCCGTATTCATCTGCCGGCAGCGATGATGTTTACAAGCATATCAAGGATGCAGGAATGTTTGCACCAACCCAGAGGACAGAAGGCATCTCCACCTCTGACATCATCACGCGCATCGTCCGGGACTATGATGTGTACGTGAGGAGAAACCTCCAGCGAGGATACACTGCCAAAGAGCTAAACGTCAGCTTCATCAACGAGAAGAAGTACCACCTGCAGGAGCGCGTGGATAAGGTGAAGCAGAAGGTGCGGGACGTGGAGGAGAAGAGTAAGGAGTTTGTGCAGAAAGTGGAGGAGAAGAGCATCGACCTCATCCAGAAGTGGGAGGAGAAATCCCGCGAGTTCATTGGAAACTTCCTGCAGATGTTCGGTCCAGAGGGGGCGCTGAAGCACATGCTGAAGGAGGGGAAGGGCCGCATGCTGCAGGCCATCAGTCCCCGCCAGAGTCCCTCCAGCAGCCCGACCCGCGAGCGCTCGCCCTCGCCCACCTTCCGCCTGCCCTTCTTCACCAAGACCTCACCACCCGGATCACCCTTCACCCTGCGGGGGCACGTCGGCGCCCAGACCATCAgcgaggatgatgatgatgatgatgacgatgatgagaTTTAAGCTGCTGGTGAAGAAGCTAAAACTGGAAAACCCGAAATGGACTCTGTTGAAGAAACTGGACtctggactgtgtgtgtgtacggttCTCTGCACTTTCCACGAGTGTGTTTTTTTCGGCGAGAGAAGCTCCCGTGTTCAGACTGTTGTAAAACACAGGTTAAATACTGCTCATATAGTTCAGTGCAGCGTGTACCGTACCACGTGCGTGATGGTGAAGAGGAGTGCCAGCGTTCAGGATTGTTTAGAGGTGTTTAGTCCTTGGGTAAAGGGCTGGGTTTAAGGAAGCGGTTCCCACTTTTATCACGATACACAGCTTTTATTcgtttttacttgttttaatgtggagaattcagttcagttcagttcacatttataatctttatctatttttgaAATATGACAGTATCACACAGAACAATTTTTATTCAACTTCTGTTAAAGTCTCTGCAGTGAGCCCTTCCTTTTAAATACTAATTATAATGAAAATAttaattctgaattatttataattaattatgtatCTTGAAGGTGGGTGGGgcctttaaaaactactttttgcTTTGTAATATTTGAGGTCAGACTGTTTGATACTGCTTTTTTCTCATAAATAAGCCAAAATAGCAAACATCACCTGCTAGGAAGTTGAATATTTAAGACATACTTAAGAGATGTAATTgcttataatattaattaatagaaaattattatcaatcaaaaaagtaaaatggcTAAAAGCACAGACTACATAAACCATAATGACAGATG

Function

symbol description
pcyt1a Enables choline-phosphate cytidylyltransferase activity and identical protein binding activity. Involved in CDP-choline pathway. Located in endoplasmic reticulum and nucleus. Implicated in spondylometaphyseal dysplasia with cone-rod dystrophy.

NR:

description
choline-phosphate cytidylyltransferase A

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00968 PCYT1; choline-phosphate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250619.3 True 2117 mRNA 0.47 9 2395957 2405369
XM_007250620.3 False 2113 mRNA 0.47 9 2395958 2405369

Neighbor

gene id symbol gene type direction distance location
LOC103042593 LOC108430758 coding upstream 33087 2322038 ~ 2362870 (+)
dpp6 LOC108430761,LOC108267703 coding upstream 165892 2102221 ~ 2230065 (+)
LOC103042278 NA coding upstream 480938 1869474 ~ 1915019 (+)
kdsr kdsr,LOC106569188,LOC102792240 coding upstream 535442 1855297 ~ 1860515 (+)
LOC103043726 LOC103043726,LOC105899208 coding upstream 578745 1810725 ~ 1817212 (+)
LOC103040954 anxa13,anxa13l,LOC103040954,LOC107727547,LOC108267681,LOC107559374 coding downstream 17539 2422908 ~ 2431028 (+)
LOC103041271 LOC108430753 coding downstream 59962 2465331 ~ 2473513 (+)
tsen15 tsen15,LOC107681748 coding downstream 68692 2474061 ~ 2476180 (+)
LOC103042800 NA coding downstream 88595 2493964 ~ 2507127 (+)
cmpk1 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 coding downstream 117139 2522508 ~ 2530163 (+)
G137975 NA non-coding upstream 1046 2393996 ~ 2394911 (+)
G137973 NA non-coding upstream 5145 2390193 ~ 2390812 (+)
G137965 LOC108430757 non-coding upstream 24579 2350634 ~ 2371378 (+)
G137960 NA non-coding upstream 103493 2289092 ~ 2292464 (+)
G137951 arhgap21b,LOC108267702 non-coding upstream 150296 2244516 ~ 2245661 (+)
G137978 NA non-coding downstream 1887 2407256 ~ 2408538 (+)
G137982 ap2m1,LOC108430755 non-coding downstream 10556 2415925 ~ 2420031 (+)
G137999 imp3,LOC107709332,LOC107671714 non-coding downstream 84055 2489424 ~ 2491127 (+)
G138015 NA non-coding downstream 162670 2568039 ~ 2578880 (+)
G138026 NA non-coding downstream 202611 2607980 ~ 2609042 (+)
G137929 NA other upstream 371571 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 544644 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 896001 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1355987 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1407319 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 495106 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 676687 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 710051 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1396484 3801853 ~ 3839372 (+)
G138701 NA other downstream 1427886 3833255 ~ 3834460 (+)

Expression


Co-expression Network