LOC103041271 (LOC108430753)


Basic Information

Item Value
gene id LOC103041271
gene name LOC108430753
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2465331 ~ 2473513 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250622.3
atgtgaataaaataaagatacagTTACCTAAAGTAATGTAACGTTTTATTAATAGCCTGTTGTAATCTGGATTTGTGCAACCGCACAGCATTGTGGGTCTTGTAGGAAAGACGCTCCCAGTTTTCTCTTGCTTTTAGGAGATTGACGGTAGATGTAAACTACATTTCCCAAGAGGCCTTTTGCTTTAATGCAAGTTACGCTGTCCAGAGACCGGCTTTGCATTAAATGGGCTGCGTGCGGAAGAAACGCCTTGTAACTGGTAACTGGTAACAATCAGCTGGAAATGGAAAATGACGATAAATCTATTGATGAGAGAAGATTTGAAGCAGCTGTTAAAGTGATGAGGAAACTGCCTGAAGATGGAACATTTGAACCATCTGATGAGATGCTGGCACTGTTTTACAGTTACTATAAGCAGGCGACCGTAGGGCCGTGTAATACAACCAAACCCAACGCATGGGACTCAATTGGTAAAGCCAAATgGGAAGCATGGAAAGCATTAGGAGAAATGACGAAGGAGCAAGCCATGAAGGAGTACATTCAGGAGATCCAGCTGATATTGGAAATGATACCAGTTACAGAAGAAATGGTGGATTTGATGGATGAGCTGGATCCATTTTATGAAGTAGTGGAAGACGAGGACGATGACGTCAACAGCAACCCTGCAACACTGGCAATCGAAGcagggatgagttgggatgaAGAACCAGAGAACAATGCAGGTTGGGCCAGTTCTTtggaagatgaagatgaagaggatGGAGTGGAGCTGGAGGACAGCAgtgaagGTGGAGTAGGGAAGGACGAGAGAGTACCGCCGGCGCTGTGTAACGGAAGTGCAGAGGTTTCCTCTCTGACCAACGACACACACAGCTCCCTGAACACAGAGCAGGAAGAGGAGGAGCTAGCCTGCAGCACAGAGAACTCAAGCCAGGACCCTCAGGATGTTTATCCCTGCACCGACTACATCAGCGATGAAGTCCCTGAGTGTGAAGTTAGCAGTGACTCAGTGGAATGTGCAACACCTCAAGAGGGTTTAGGGGTTTCCAGGGGCCGGTTGGCAGGGCCCGAGGCATTTGGAGCCAGAAGACTGGAGGATCCCAGAGGAAGCCAGGATGCAAAACGGCAGGAGACCCTCCTCCCTATCCCTGTGGCAGCTGGGCCAGTCCAGTCTGAGAGAGACTCAGTGGACAGAGGAAGGGATGAACATCATTTAGGTGGATCTCAAATCGTAGATGCTGTTGGGAAAACACTGAAAGGTCATGAAGTCCCGCAGTGTGTAGAGAAAACCAAACACCGTGTGAACACACAGATCACCTCAGCATTATCACGGCTACAGGATGACATGCAGAACGTGctgcagagactgaacacaCTAGAAGCTCTGACTGCAGCTCAGGATGAAGCTTTTCCTCCTGAACAAGACCCTCATTCAGCTTCAGTAAAAAAGCGATTTCCCTGGTGGCCTCAGGACACGTCTCCTATAACTGTAGCTCTGGCTCTTATCTGGCCTTTTGCTGTGAACTGGCTGGTGCAGATTTATCTTCAGAGGAAGAGGAGGAGGATAAAATGAAGACGATGCTGTGAACGTATCCGAATTCAGGTGGAGCCCTCAGTGACAATCAGCCTCTTTCtacagtatttataatattacagtgtaaaaatgtattaaagatACATATACAGATTAGcataaataagttaaaaataacaataattctcattttaataaagtggctaagAACTAGAGTTCGTTTAAAGAACAAAGCTTGGTTCAGTTCCATCACCTGTATACTGATAAAccctaaaacactgatttattaaACCAAGTGTTGGTTTAGTGAGTGGAGGATAACCACAGCGAATACACTCATGAGTTGAGTTTTGGagatgttatatatgttatatatattataaaacaaatgtatatatggattaattgtattatattctattataaaTAAACACTCACTGCCCAGATAAGAatcttataatattttattataagcaGTAAAGTTTATTCtttgtacatttattaatatgtttatttatgttatgtATTATTAAGTGCAGATgatatattgtgtttaaaatcTGCATAGTTAGAAATATATCTAAATTTATTTCTAAGCACTTTATTTATGTTGCAGTAAAATTACTTTAtcctgaataaatatttgtgaggttttt
>XM_007250624.3
AAATGGAAAATGACGATAAATCTATTGATGAGAGAAGATTTGAAGCAGCTGTTAAAGTGATGAGGAAACTGCCTGAAGATGTAGATTACTAATGAAGCAGTACAAATGAGCAAACTGGAGTTTCTGAGACATTTCGACTAGATCCTAACCGTGGCAAGACGACAGGGTTAGAGAAGTTCCTAAACATCAGGGAAGCATGGAAAGCATTAGGAGAAATGACGAAGGAGCAAGCCATGAAGGAGTACATTCAGGAGATCCAGCTGATATTGGAAATGATACCAGTTACAGAAGAAATGGTGGATTTGATGGATGAGCTGGATCCATTTTATGAAGTAGTGGAAGACGAGGACGATGACGTCAACAGCAACCCTGCAACACTGGCAATCGAAGcagggatgagttgggatgaAGAACCAGAGAACAATGCAGGTTGGGCCAGTTCTTtggaagatgaagatgaagaggatGGAGTGGAGCTGGAGGACAGCAgtgaagGTGGAGTAGGGAAGGACGAGAGAGTACCGCCGGCGCTGTGTAACGGAAGTGCAGAGGTTTCCTCTCTGACCAACGACACACACAGCTCCCTGAACACAGAGCAGGAAGAGGAGGAGCTAGCCTGCAGCACAGAGAACTCAAGCCAGGACCCTCAGGATGTTTATCCCTGCACCGACTACATCAGCGATGAAGTCCCTGAGTGTGAAGTTAGCAGTGACTCAGTGGAATGTGCAACACCTCAAGAGGGTTTAGGGGTTTCCAGGGGCCGGTTGGCAGGGCCCGAGGCATTTGGAGCCAGAAGACTGGAGGATCCCAGAGGAAGCCAGGATGCAAAACGGCAGGAGACCCTCCTCCCTATCCCTGTGGCAGCTGGGCCAGTCCAGTCTGAGAGAGACTCAGTGGACAGAGGAAGGGATGAACATCATTTAGGTGGATCTCAAATCGTAGATGCTGTTGGGAAAACACTGAAAGGTCATGAAGTCCCGCAGTGTGTAGAGAAAACCAAACACCGTGTGAACACACAGATCACCTCAGCATTATCACGGCTACAGGATGACATGCAGAACGTGctgcagagactgaacacaCTAGAAGCTCTGACTGCAGCTCAGGATGAAGCTTTTCCTCCTGAACAAGACCCTCATTCAGCTTCAGTAAAAAAGCGATTTCCCTGGTGGCCTCAGGACACGTCTCCTATAACTGTAGCTCTGGCTCTTATCTGGCCTTTTGCTGTGAACTGGCTGGTGCAGATTTATCTTCAGAGGAAGAGGAGGAGGATAAAATGAAGACGATGCTGTGAACGTATCCGAATTCAGGTGGAGCCCTCAGTGACAATCAGCCTCTTTCtacagtatttataatattacagtgtaaaaatgtattaaagatACATATACAGATTAGcataaataagttaaaaataacaataattctcattttaataaagtggctaagAACTAGAGTTCGTTTAAAGAACAAAGCTTGGTTCAGTTCCATCACCTGTATACTGATAAAccctaaaacactgatttattaaACCAAGTGTTGGTTTAGTGAGTGGAGGATAACCACAGCGAATACACTCATGAGTTGAGTTTTGGagatgttatatatgttatatatattataaaacaaatgtatatatggattaattgtattatattctattataaaTAAACACTCACTGCCCAGATAAGAatcttataatattttattataagcaGTAAAGTTTATTCtttgtacatttattaatatgtttatttatgttatgtATTATTAAGTGCAGATgatatattgtgtttaaaatcTGCATAGTTAGAAATATATCTAAATTTATTTCTAAGCACTTTATTTATGTTGCAGTAAAATTACTTTAtcctgaataaatatttgtgaggttttt

Function

NR:

description
PREDICTED: acyl-CoA-binding domain-containing protein 5-B-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250622.3 True 2190 mRNA 0.42 13 2465331 2473513
XM_007250624.3 False 1897 mRNA 0.42 12 2465890 2473513

Neighbor

gene id symbol gene type direction distance location
LOC103040954 anxa13,anxa13l,LOC103040954,LOC107727547,LOC108267681,LOC107559374 coding upstream 34303 2422908 ~ 2431028 (+)
LOC103040438 pcyt1a,LOC103040438,LOC108430756,LOC108267677,LOC107709348,LOC107671662,LOC107727528 coding upstream 59962 2395957 ~ 2405369 (+)
LOC103042593 LOC108430758 coding upstream 102461 2322038 ~ 2362870 (+)
dpp6 LOC108430761,LOC108267703 coding upstream 235266 2102221 ~ 2230065 (+)
LOC103042278 NA coding upstream 550312 1869474 ~ 1915019 (+)
tsen15 tsen15,LOC107681748 coding downstream 548 2474061 ~ 2476180 (+)
LOC103042800 NA coding downstream 20451 2493964 ~ 2507127 (+)
cmpk1 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 coding downstream 48995 2522508 ~ 2530163 (+)
LOC111194265 NA coding downstream 88622 2562135 ~ 2564047 (+)
LOC103044323 LOC108430700 coding downstream 116004 2589517 ~ 2593691 (+)
G137982 ap2m1,LOC108430755 non-coding upstream 45300 2415925 ~ 2420031 (+)
G137978 NA non-coding upstream 56793 2407256 ~ 2408538 (+)
G137977 NA non-coding upstream 64489 2400557 ~ 2400842 (+)
G137975 NA non-coding upstream 70420 2393996 ~ 2394911 (+)
G137973 NA non-coding upstream 74519 2390193 ~ 2390812 (+)
G137999 imp3,LOC107709332,LOC107671714 non-coding downstream 15911 2489424 ~ 2491127 (+)
G138015 NA non-coding downstream 94526 2568039 ~ 2578880 (+)
G138026 NA non-coding downstream 134467 2607980 ~ 2609042 (+)
G138029 NA non-coding downstream 181463 2654976 ~ 2713458 (+)
G138043 NA non-coding downstream 182689 2656202 ~ 2733018 (+)
G137929 NA other upstream 440945 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 614018 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 965375 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1425361 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1476693 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 426962 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 608543 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 641907 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1328340 3801853 ~ 3839372 (+)
G138701 NA other downstream 1359742 3833255 ~ 3834460 (+)

Expression


Co-expression Network