cmpk1 (cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368)


Basic Information

Item Value
gene id cmpk1
gene name cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2522508 ~ 2530163 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250631.3
GCAGCGGATGTGGAATCGTCTAGGCGGCACGTCTTCCTCGCCACGCAGCTCCCGGTGATTGAGGTGGAGGTTGCGGTTCCGGACTCCGGTATTGTCGGTATATCGCTCGCTCGCTCCCCCGCCCTCCCCGCGCCGGTGTATGATCGCCGGTCTGATCCGCAGCTCGCGTGAGAAAGTCTCGAGCGCTCTGCGTGGGATCGCGCTCGCCATGAAGCCGCAGGTCGTGTTCGTGCTGGGCGGTCCGGGCGCGGGCAAAGGGACACAGTGCGCCAGAATAGTGCAGAATTACAGCTACACTCACCTGTCTGCTGGAGATCTGCTGAGAGAGGAGCGCAGCCGCACGGGCTCCGAGTTCGGGCAGCTCATCGACAGCTACATCAAAGAGGGCAAGATCGTTCCTGTGGAGATCACCATCAACCTGCTGAGGAAGGCCATGGAGGAAACGATGAAGGCGGACGAGAACAAGTTCAGATTTCTTATTGACGGATTTCCTCGAAACCAAGACAACCTGCAGGGCTGGACCACAGTCATGGACGGCAAAGCCGACGTcaaatttgttctcttttttgaCTGCAGTAATGAAGTGTGTATCGACAGGTGTCTGGAGAGAGGGAAGAGCAGTGGCCGCACAGACGATAACAGAGAGAGTCTGGAGAAAAGGATCCAGACCTACCTGCAGTCCACTCGGCCAATCATAGAGCAGTACGAGCAGCAGGGTAAAGTGCGCTGCATTGATGCCTCGCGTGATGTGGACGAGGTGTTTGCTGACGTGAAGAAAGTCCTCGATAAGGAAGGCTAGAGCTCCAAAACTTCCATCTGCTGAAGTGCCATCAGCCCCAAATCTTCAGAATGTTCTTTTTATTGATGTCAGCAACACTAtgcttcatttatttacatgattatctttttattcatttaaatgtgttttttgttttttgtcattgtTGTCGCGAGTGTGTgggtatgaatgtgtgtgtatgtgttgggtgtgtgcatatgtatgtatgtatgtatgtgtgtgtgagtgagtgtgtgtgtggacggGGGCGGGGCTAGACGTTTGGTCGCCCTGCAGCCATACCTGCTTAATACAACGCTGGAGAGGAACAAAAATTAGAGCAGTAGAGTGAAAGTGTAAAGAGACTGTTTCCATTGGAATGGTGTGCGGTAGCTTCTGCGCCGTGTTTATGTGACCTAAAGTGTGTTTGAGAGTTTGATTCGTCTGTACGATGGAACCATATTATCTTTAACTACGTCTAACTAAGGCCAGAACAGCAATGAAAGGGGGCCAAGCACTGACTGCATAGAGCTGCTGCATCCAGATCACAGTAACTGTAAGCGGTATGAATTAACCAGTGTTTCTCCAGCTGCAGTCATATAGTTCATTTCTACTGTaaggttctgtgtttttttccaggTCTAGAACACCTTATCCAGTTCAAATAGGACTTCATTCCTACAAATATAAAGATTAAAGCACAACTGTGAAATGCATATTATCTGACTGGAGCTGAGGAAACACTGGCCTAGATCTTAACTTTGCAGCATTTTAGGCTGGATTTCTAGACCCAGGTTAAGCTCAAGTCTTGACTAAATGATGTTTTTAATGCAGAGACACTattaaagaagaactctggtgtaaaattgacttttgttgtagtaaaacatgataaaaaggaCTTCCCTTcaatgaatagcacacctccgctttcccacagctttctgagatctaGTAATTTTGTGCTTCTTCTTTAAGATTTACTTTAAGTTTACTCTTAGACTTCTAAGGCTGTACCTTCATCCCATTTTACCCATTTTGCCCTGATACTTACCTTACCTTTTCTTTTCGAGTGTAAAGAGGGGAAATCCTCCACCTTAAGCACCCGATAGATAtgtcatcaggagcgctaaagtttagttagcttagctgctgctggttaactattTCACTTTAGGGCTGTATAAATGTATGTCTTCATATAATAAAGGGGGTAGATgtgcagaaatgaattattataattattattgttcattctgccttaaatgctgcagcccctgtgCCTTTTGTTGTACTATTTAAGGTagaatgggaaagttagcttTTTTTAGCTAGCCACTGAGATaaactactatatatatatatatatatatatatatatatatatatatatatatatgcttgttatgaagaattcaaAAACAAGTCattaaacattgaaactacacattagaCTATGGTAATATTAAAGTGCTAATCgtcaattttaaataatgaaatttgtgtttttttgatgggcaaacaagccctatcccttcccctaacctacccctctaacctaacaagaatcgggTAAGTGGTAAAATGGGatttaaactgttaaaacagGCTTTTCGTGTAGgatttcttgttttattgtatctgtAGGTACTTGTATGCATTTAGCTAAGGTCTGGGTTAGCAGTCAGTGTTGATATATCGGTGGGATCAGTCATGAATTGGTTGTCTTTGTCCTGTTGGGTCAGAAATCAGAAATACAATGTACTGTCTCCTCCTGCAGCTGCTGCAATATAAAACACTCTTAACAGACCCCACTTCAGAAAATAAACGTCCATTtaaacataacacacacacaataaaaatgCCGGCTGCTACCAAA

Function

symbol description
cmpk Predicted to enable UMP kinase activity; cytidylate kinase activity; and nucleoside diphosphate kinase activity. Predicted to be involved in nucleoside phosphate metabolic process. Predicted to act upstream of or within 'de novo' pyrimidine nucleobase biosynthetic process; phosphorylation; and pyrimidine nucleotide biosynthetic process. Predicted to be active in cytoplasm and nucleus. Is expressed in neural plate and notochord. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CMPK1 (cytidine/uridine monophosphate kinase 1).
cmpk1 Enables nucleoside diphosphate kinase activity and nucleoside monophosphate kinase activity. Involved in nucleoside diphosphate phosphorylation and nucleoside triphosphate biosynthetic process. Located in nucleolus and nucleoplasm. Implicated in lung non-small cell carcinoma.

NR:

description
UMP-CMP kinase

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K13800 CMPK1, UMPK; UMP-CMP kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250631.3 True 2657 mRNA 0.43 6 2522508 2530163

Neighbor

gene id symbol gene type direction distance location
LOC103042800 NA coding upstream 15381 2493964 ~ 2507127 (+)
tsen15 tsen15,LOC107681748 coding upstream 46328 2474061 ~ 2476180 (+)
LOC103041271 LOC108430753 coding upstream 48995 2465331 ~ 2473513 (+)
LOC103040954 anxa13,anxa13l,LOC103040954,LOC107727547,LOC108267681,LOC107559374 coding upstream 91480 2422908 ~ 2431028 (+)
LOC103040438 pcyt1a,LOC103040438,LOC108430756,LOC108267677,LOC107709348,LOC107671662,LOC107727528 coding upstream 117139 2395957 ~ 2405369 (+)
LOC111194265 NA coding downstream 31972 2562135 ~ 2564047 (+)
LOC103044323 LOC108430700 coding downstream 59354 2589517 ~ 2593691 (+)
LOC103044144 LOC108430743 coding downstream 159123 2689286 ~ 2711716 (+)
LOC103044744 NA coding downstream 217655 2747818 ~ 2763344 (+)
LOC111194192 NA coding downstream 390556 2920719 ~ 2922118 (+)
G137999 imp3,LOC107709332,LOC107671714 non-coding upstream 31381 2489424 ~ 2491127 (+)
G137982 ap2m1,LOC108430755 non-coding upstream 102477 2415925 ~ 2420031 (+)
G137978 NA non-coding upstream 113970 2407256 ~ 2408538 (+)
G137977 NA non-coding upstream 121666 2400557 ~ 2400842 (+)
G137975 NA non-coding upstream 127597 2393996 ~ 2394911 (+)
G138015 NA non-coding downstream 37876 2568039 ~ 2578880 (+)
G138026 NA non-coding downstream 77817 2607980 ~ 2609042 (+)
G138029 NA non-coding downstream 124813 2654976 ~ 2713458 (+)
G138043 NA non-coding downstream 126039 2656202 ~ 2733018 (+)
G138030 NA non-coding downstream 149956 2680119 ~ 2749252 (+)
G137929 NA other upstream 498122 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 671195 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1022552 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1482538 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1533870 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 370312 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 551893 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 585257 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1271690 3801853 ~ 3839372 (+)
G138701 NA other downstream 1303092 3833255 ~ 3834460 (+)

Expression


Co-expression Network